<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="experiment_104363605" center_name="BaseSpace" accession="SRX4228959">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX4228959</PRIMARY_ID>
      <SUBMITTER_ID namespace="BaseSpace">experiment_104363605</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Profiling Cas13a targeting influenza virus: NT_CR_8h </TITLE>
    <STUDY_REF accession="SRP150742">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP150742</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA476504</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina Paired-end sequencing of sample SAMN09427133 TRANSCRIPTOMIC DNA</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS3428155">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS3428155</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN09427133</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>PS02_5</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>A549 cell lines transfected with Cas13a mRNA and crRNA targeting influenza virus. RNA was extracted using RNeasy mini kit and depleted for rRNA using NEB Next rRNA depletion kit. Library prepared using NEB Ultra II RNA library prep kit for Illumina.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>152</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>77</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM/>
          <VERSION/>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
  </EXPERIMENT>
</EXPERIMENT_SET>
