GSM3231188: RNA-seq WT clone 1 DMSO; Mus musculus; RNA-Seq

SRX4321932 GSM3231188 GSM3231188: RNA-seq WT clone 1 DMSO; Mus musculus; RNA-Seq SRP151605 SRS3484399 GSM3231188 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using standard Trizol protocol. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. Illumina HiSeq 2500 gds 303231188 GSM3231188 GEO Accession GSM3231188 SRX4321933 GSM3231189 GSM3231189: RNA-seq WT clone 2 DMSO; Mus musculus; RNA-Seq SRP151605 SRS3484400 GSM3231189 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using standard Trizol protocol. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. Illumina HiSeq 2500 gds 303231189 GSM3231189 GEO Accession GSM3231189 SRX4321934 GSM3231190 GSM3231190: RNA-seq Smchd1-/- clone 1 DMSO; Mus musculus; RNA-Seq SRP151605 SRS3484401 GSM3231190 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using standard Trizol protocol. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. Illumina HiSeq 2500 gds 303231190 GSM3231190 GEO Accession GSM3231190 SRX4321935 GSM3231191 GSM3231191: RNA-seq Smchd1-/- clone 2 DMSO; Mus musculus; RNA-Seq SRP151605 SRS3484402 GSM3231191 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using standard Trizol protocol. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. Illumina HiSeq 2500 gds 303231191 GSM3231191 GEO Accession GSM3231191 SRX4321936 GSM3231192 GSM3231192: RNA-seq WT clone 1 Aza; Mus musculus; RNA-Seq SRP151605 SRS3484403 GSM3231192 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using standard Trizol protocol. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. Illumina HiSeq 2500 gds 303231192 GSM3231192 GEO Accession GSM3231192 SRX4321937 GSM3231193 GSM3231193: RNA-seq WT clone 2 Aza; Mus musculus; RNA-Seq SRP151605 SRS3484404 GSM3231193 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using standard Trizol protocol. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. Illumina HiSeq 2500 gds 303231193 GSM3231193 GEO Accession GSM3231193 SRX4321938 GSM3231194 GSM3231194: RNA-seq Smchd1-/- clone 1 Aza; Mus musculus; RNA-Seq SRP151605 SRS3484405 GSM3231194 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using standard Trizol protocol. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. Illumina HiSeq 2500 gds 303231194 GSM3231194 GEO Accession GSM3231194 SRX4321939 GSM3231195 GSM3231195: RNA-seq Smchd1-/- clone 2 Aza; Mus musculus; RNA-Seq SRP151605 SRS3484406 GSM3231195 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using standard Trizol protocol. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. Illumina HiSeq 2500 gds 303231195 GSM3231195 GEO Accession GSM3231195 SRX4321940 GSM3231196 GSM3231196: RNA-seq pure cas MEF; Mus musculus; RNA-Seq SRP151605 SRS3484407 GSM3231196 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was extracted using standard Trizol protocol. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. Illumina HiSeq 2500 gds 303231196 GSM3231196 GEO Accession GSM3231196 SRX5688365 GSM3722598 GSM3722598: Hi-C WT; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628267 GSM3722598 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722598 GSM3722598 GEO Accession GSM3722598 SRX5688366 GSM3722599 GSM3722599: Hi-C Smchd1-/-; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628264 GSM3722599 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722599 GSM3722599 GEO Accession GSM3722599 SRX5688367 GSM3722600 GSM3722600: Hi-C Smchd1-/- Scramble replicate1; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628266 GSM3722600 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722600 GSM3722600 GEO Accession GSM3722600 SRX5688368 GSM3722601 GSM3722601: Hi-C Smchd1-/- PRC1 KD replicate1; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628265 GSM3722601 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722601 GSM3722601 GEO Accession GSM3722601 SRX5688369 GSM3722602 GSM3722602: ChIP-seq WT clone 1 input; Mus musculus; ChIP-Seq SRP151605 PRJNA478454 SRS4628270 GSM3722602 ChIP-Seq GENOMIC ChIP Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722602 GSM3722602 GEO Accession GSM3722602 SRX5688370 GSM3722603 GSM3722603: ChIP-seq WT clone 1 H3K27me3 replicate1; Mus musculus; ChIP-Seq SRP151605 PRJNA478454 SRS4628271 GSM3722603 ChIP-Seq GENOMIC ChIP Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722603 GSM3722603 GEO Accession GSM3722603 SRX5688371 GSM3722604 GSM3722604: ChIP-seq WT clone 1 H3K27me3 replicate2; Mus musculus; ChIP-Seq SRP151605 PRJNA478454 SRS4628269 GSM3722604 ChIP-Seq GENOMIC ChIP Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722604 GSM3722604 GEO Accession GSM3722604 SRX5688372 GSM3722605 GSM3722605: ChIP-seq WT clone 1 H2AK119ub; Mus musculus; ChIP-Seq SRP151605 PRJNA478454 SRS4628268 GSM3722605 ChIP-Seq GENOMIC ChIP Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722605 GSM3722605 GEO Accession GSM3722605 SRX5688373 GSM3722606 GSM3722606: ChIP-seq Smchd1-/- clone 1 input; Mus musculus; ChIP-Seq SRP151605 PRJNA478454 SRS4628272 GSM3722606 ChIP-Seq GENOMIC ChIP Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722606 GSM3722606 GEO Accession GSM3722606 SRX5688374 GSM3722607 GSM3722607: ChIP-seq Smchd1-/- clone 1 H3K27me3 replicate1; Mus musculus; ChIP-Seq SRP151605 PRJNA478454 SRS4628273 GSM3722607 ChIP-Seq GENOMIC ChIP Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722607 GSM3722607 GEO Accession GSM3722607 SRX5688375 GSM3722608 GSM3722608: ChIP-seq Smchd1-/- clone 1 H3K27me3 replicate2; Mus musculus; ChIP-Seq SRP151605 PRJNA478454 SRS4628274 GSM3722608 ChIP-Seq GENOMIC ChIP Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722608 GSM3722608 GEO Accession GSM3722608 SRX5688376 GSM3722609 GSM3722609: ChIP-seq Smchd1-/- clone 1 H2AK119ub; Mus musculus; ChIP-Seq SRP151605 PRJNA478454 SRS4628275 GSM3722609 ChIP-Seq GENOMIC ChIP Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722609 GSM3722609 GEO Accession GSM3722609 SRX5688377 GSM3722610 GSM3722610: CHART-seq WT clone 1 input replicate1; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628276 GSM3722610 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722610 GSM3722610 GEO Accession GSM3722610 SRX5688378 GSM3722611 GSM3722611: CHART-seq WT clone 1 Xist capture probes replicate1; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628278 GSM3722611 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722611 GSM3722611 GEO Accession GSM3722611 SRX5688379 GSM3722612 GSM3722612: CHART-seq Smchd1-/- clone 1 input replicate1; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628277 GSM3722612 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722612 GSM3722612 GEO Accession GSM3722612 SRX5688380 GSM3722613 GSM3722613: CHART-seq Smchd1-/- clone 1 Xist capture probes replicate1; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628279 GSM3722613 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722613 GSM3722613 GEO Accession GSM3722613 SRX5688381 GSM3722614 GSM3722614: CHART-seq WT clone 1 input replicate2; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628280 GSM3722614 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722614 GSM3722614 GEO Accession GSM3722614 SRX5688382 GSM3722615 GSM3722615: CHART-seq WT clone 1 Xist capture probes replicate2; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628281 GSM3722615 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722615 GSM3722615 GEO Accession GSM3722615 SRX5688383 GSM3722616 GSM3722616: CHART-seq Smchd1-/- clone 1 input replicate2; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628282 GSM3722616 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722616 GSM3722616 GEO Accession GSM3722616 SRX5688384 GSM3722617 GSM3722617: CHART-seq Smchd1-/- clone 1 Xist capture probes replicate2; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628284 GSM3722617 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722617 GSM3722617 GEO Accession GSM3722617 SRX5688385 GSM3722618 GSM3722618: Hi-C Smchd1-/- Scramble replicate2; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628283 GSM3722618 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722618 GSM3722618 GEO Accession GSM3722618 SRX5688386 GSM3722619 GSM3722619: Hi-C Smchd1-/- PRC1 KD replicate2; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628286 GSM3722619 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722619 GSM3722619 GEO Accession GSM3722619 SRX5688387 GSM3722620 GSM3722620: Hi-C WT Scramble; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628285 GSM3722620 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722620 GSM3722620 GEO Accession GSM3722620 SRX5688388 GSM3722621 GSM3722621: Hi-C WT PRC1 KD; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628287 GSM3722621 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722621 GSM3722621 GEO Accession GSM3722621 SRX5688389 GSM3722622 GSM3722622: Hi-C WT HNRNPK KD replicate1; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628288 GSM3722622 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722622 GSM3722622 GEO Accession GSM3722622 SRX5688390 GSM3722623 GSM3722623: Hi-C WT HNRNPK KD replicate2; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628289 GSM3722623 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722623 GSM3722623 GEO Accession GSM3722623 SRX5688391 GSM3722624 GSM3722624: Hi-C Smchd1-/- HNRNPK KD replicate1; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628291 GSM3722624 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722624 GSM3722624 GEO Accession GSM3722624 SRX5688392 GSM3722625 GSM3722625: Hi-C Smchd1-/- HNRNPK KD replicate2; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628290 GSM3722625 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722625 GSM3722625 GEO Accession GSM3722625 SRX5688393 GSM3722626 GSM3722626: Hi-C Xist deletion; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628292 GSM3722626 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722626 GSM3722626 GEO Accession GSM3722626 SRX5688394 GSM3722627 GSM3722627: Hi-C D0 ES [re-analyzed GSM3036556]; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628293 GSM3722627 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722627 GSM3722627 GEO Accession GSM3722627 SRX5688395 GSM3722628 GSM3722628: Hi-C D4 EB [re-analyzed GSM3036557]; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628294 GSM3722628 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722628 GSM3722628 GEO Accession GSM3722628 SRX5688396 GSM3722629 GSM3722629: Hi-C D7 EB [re-analyzed GSM3036558]; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4628295 GSM3722629 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303722629 GSM3722629 GEO Accession GSM3722629 SRX5771778 GSM3741791 GSM3741791: Hi-C Xist deletion rep2; Mus musculus; OTHER SRP151605 PRJNA478454 SRS4705637 GSM3741791 OTHER GENOMIC other Total RNA was extracted using standard Trizol protocol. ChIP/CHART/Hi-C-enriched and input DNA were extracted with phenol:chloroform. RNA-seq libraries were prepared by dUTP-mediated directional RNA-seq following NEBNext Ultra directional RNA library preparation protocol. ChIP-seq and Hi-C libraries were prepared by NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina. CHART-seq libraries were generated by NEBNext Ultra DNA Library Prep Kit for Illumina. Paired-end 50 or 69-cycle with Illumina HiSeq Illumina HiSeq 2500 gds 303741791 GSM3741791 GEO Accession GSM3741791