SRX4390348 GSM3271472 GSM3271472: Col-0 red rep1; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546692 GSM3271472 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271472 GEO Accession GSM3271472 SRX4390349 GSM3271473 GSM3271473: Col-0 red rep2; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546678 GSM3271473 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271473 GEO Accession GSM3271473 SRX4390350 GSM3271474 GSM3271474: Col-0 red rep3; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546701 GSM3271474 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271474 GEO Accession GSM3271474 SRX4390351 GSM3271475 GSM3271475: cop1 red rep1; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546680 GSM3271475 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271475 GEO Accession GSM3271475 SRX4390352 GSM3271476 GSM3271476: cop1 red rep2; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546705 GSM3271476 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271476 GEO Accession GSM3271476 SRX4390353 GSM3271477 GSM3271477: cop1 red rep3; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546682 GSM3271477 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271477 GEO Accession GSM3271477 SRX4390354 GSM3271478 GSM3271478: spaQ red rep1; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546684 GSM3271478 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271478 GEO Accession GSM3271478 SRX4390355 GSM3271479 GSM3271479: spaQ red rep2; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546703 GSM3271479 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271479 GEO Accession GSM3271479 SRX4390356 GSM3271480 GSM3271480: spaQ red rep3; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546685 GSM3271480 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271480 GEO Accession GSM3271480 SRX4390357 GSM3271481 GSM3271481: phyB full length dark rep1; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546698 GSM3271481 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271481 GEO Accession GSM3271481 SRX4390358 GSM3271482 GSM3271482: phyB full length dark rep2; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546686 GSM3271482 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271482 GEO Accession GSM3271482 SRX4390359 GSM3271483 GSM3271483: phyB full length dark rep3; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546700 GSM3271483 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271483 GEO Accession GSM3271483 SRX4390360 GSM3271484 GSM3271484: phyB c-term deletion dark rep1; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546687 GSM3271484 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271484 GEO Accession GSM3271484 SRX4390361 GSM3271485 GSM3271485: phyB c-term deletion dark rep2; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546688 GSM3271485 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271485 GEO Accession GSM3271485 SRX4390362 GSM3271486 GSM3271486: phyB c-term deletion dark rep3; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546689 GSM3271486 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271486 GEO Accession GSM3271486 SRX4390363 GSM3271487 GSM3271487: phyB full length red rep1; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546690 GSM3271487 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271487 GEO Accession GSM3271487 SRX4390364 GSM3271488 GSM3271488: phyB full length red rep2; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546697 GSM3271488 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271488 GEO Accession GSM3271488 SRX4390365 GSM3271489 GSM3271489: phyB full length red rep3; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546704 GSM3271489 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271489 GEO Accession GSM3271489 SRX4390366 GSM3271490 GSM3271490: phyB c-term deletion red rep1; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546693 GSM3271490 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271490 GEO Accession GSM3271490 SRX4390367 GSM3271491 GSM3271491: phyB c-term deletion red rep2; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546694 GSM3271491 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271491 GEO Accession GSM3271491 SRX4390368 GSM3271492 GSM3271492: phyB c-term deletion red rep3; Arabidopsis thaliana; RNA-Seq SRP153425 SRS3546695 GSM3271492 RNA-Seq TRANSCRIPTOMIC cDNA Total RNA was isolated using sigma plant total RNA kit (Sigma, Cat.# STRN250). NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (NEB Cat.# E7370S) was used to generate mRNA sequencing library according to the manufacturer's instruction. NextSeq 500 gds 303271492 GEO Accession GSM3271492