SRX4457301 GSM3305784 SRP155241 SRS3595132 GSM3305784 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305784 GSM3305784 GEO Accession GSM3305784 SRX4457302 GSM3305785 SRP155241 SRS3595133 GSM3305785 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305785 GSM3305785 GEO Accession GSM3305785 SRX4457303 GSM3305786 SRP155241 SRS3595154 GSM3305786 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305786 GSM3305786 GEO Accession GSM3305786 SRX4457304 GSM3305787 SRP155241 SRS3595135 GSM3305787 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305787 GSM3305787 GEO Accession GSM3305787 SRX4457305 GSM3305788 SRP155241 SRS3595134 GSM3305788 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305788 GSM3305788 GEO Accession GSM3305788 SRX4457306 GSM3305789 SRP155241 SRS3595136 GSM3305789 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305789 GSM3305789 GEO Accession GSM3305789 SRX4457307 GSM3305790 SRP155241 SRS3595137 GSM3305790 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305790 GSM3305790 GEO Accession GSM3305790 SRX4457308 GSM3305791 SRP155241 SRS3595138 GSM3305791 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305791 GSM3305791 GEO Accession GSM3305791 SRX4457309 GSM3305792 SRP155241 SRS3595139 GSM3305792 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305792 GSM3305792 GEO Accession GSM3305792 SRX4457310 GSM3305793 SRP155241 SRS3595140 GSM3305793 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305793 GSM3305793 GEO Accession GSM3305793 SRX4457311 GSM3305794 SRP155241 SRS3595141 GSM3305794 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305794 GSM3305794 GEO Accession GSM3305794 SRX4457312 GSM3305795 SRP155241 SRS3595142 GSM3305795 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305795 GSM3305795 GEO Accession GSM3305795 SRX4457313 GSM3305796 SRP155241 SRS3595143 GSM3305796 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305796 GSM3305796 GEO Accession GSM3305796 SRX4457314 GSM3305797 SRP155241 SRS3595144 GSM3305797 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305797 GSM3305797 GEO Accession GSM3305797 SRX4457315 GSM3305798 SRP155241 SRS3595145 GSM3305798 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305798 GSM3305798 GEO Accession GSM3305798 SRX4457316 GSM3305799 SRP155241 SRS3595147 GSM3305799 ChIP-Seq GENOMIC ChIP Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305799 GSM3305799 GEO Accession GSM3305799 SRX4457317 GSM3305800 SRP155241 SRS3595146 GSM3305800 RIP-Seq TRANSCRIPTOMIC other Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305800 GSM3305800 GEO Accession GSM3305800 SRX4457318 GSM3305801 SRP155241 SRS3595148 GSM3305801 RIP-Seq TRANSCRIPTOMIC other Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305801 GSM3305801 GEO Accession GSM3305801 SRX4457319 GSM3305802 SRP155241 SRS3595149 GSM3305802 RIP-Seq TRANSCRIPTOMIC other Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305802 GSM3305802 GEO Accession GSM3305802 SRX4457320 GSM3305803 SRP155241 SRS3595150 GSM3305803 RIP-Seq TRANSCRIPTOMIC other Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305803 GSM3305803 GEO Accession GSM3305803 SRX4457321 GSM3305804 SRP155241 SRS3595151 GSM3305804 RIP-Seq TRANSCRIPTOMIC other Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305804 GSM3305804 GEO Accession GSM3305804 SRX4457322 GSM3305805 SRP155241 SRS3595152 GSM3305805 RIP-Seq TRANSCRIPTOMIC other Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305805 GSM3305805 GEO Accession GSM3305805 SRX4457323 GSM3305806 SRP155241 SRS3595153 GSM3305806 RNA-Seq TRANSCRIPTOMIC cDNA Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305806 GSM3305806 GEO Accession GSM3305806 SRX4457324 GSM3305807 SRP155241 SRS3595155 GSM3305807 RNA-Seq TRANSCRIPTOMIC cDNA Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305807 GSM3305807 GEO Accession GSM3305807 SRX4457325 GSM3305808 SRP155241 SRS3595156 GSM3305808 RNA-Seq TRANSCRIPTOMIC cDNA Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305808 GSM3305808 GEO Accession GSM3305808 SRX4457326 GSM3305809 SRP155241 SRS3595157 GSM3305809 RNA-Seq TRANSCRIPTOMIC cDNA Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305809 GSM3305809 GEO Accession GSM3305809 SRX4457327 GSM3305810 SRP155241 SRS3595158 GSM3305810 RNA-Seq TRANSCRIPTOMIC cDNA Nascent RNA capture was performed using Click-iT® Nascent RNA Capture Kit according to the manufacturer's instructions with minor modifications. RIP-seq libraries:H2A.Z-; acH2A.Z-; TIP60-; and IgG-interacting RNA was immunoprecipitated by the respective antibodies. RNA was reverse transcribed into ds-cDNA before sequencing library preparation using Illumina ChIP-Seq sample preparation kit (cat# IP-102-1001) following manufacturer's instruction. ChIP-seq libraries: Cells were crosslinked with 1% formaldehyde for 10 min at 37°C. Pellets of 1M cells were used for immunoprecipitation as previously described (7) and lysed for 10 minutes on ice and chromatin fragmented using a Branson 250 digital sonifier. Each ChIP was performed with 4ug of antibody, incubated overnight at 4°C. A 50/50 slurry of protein A and protein G Dynabeads was used to capture enriched chromatin, which was then washed before reverse-crosslinking and proteinase K digestion at 65C. AMPure XP beads were used to clean up and isolate ChIP DNA for subsequent library construction. The following antibodies were used for ChIP: H2A.Z (Abcam ab4174, lot GR3176820-1), acH2A.Z (Abcam ab18262, lot GR306397-1), and IgG (ab171870). Illumina HiSeq 2000 gds 303305810 GSM3305810 GEO Accession GSM3305810