SRX5099274 GSM3502471 SRP172678 SRS4109644 GSM3502471 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 2500 gds 303502471 GSM3502471 GEO Accession GSM3502471 SRX5099275 GSM3502472 SRP172678 SRS4109645 GSM3502472 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 2500 gds 303502472 GSM3502472 GEO Accession GSM3502472 SRX5099276 GSM3502473 SRP172678 SRS4109646 GSM3502473 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 4000 gds 303502473 GSM3502473 GEO Accession GSM3502473 SRX5099277 GSM3502474 SRP172678 SRS4109647 GSM3502474 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 4000 gds 303502474 GSM3502474 GEO Accession GSM3502474 SRX5099278 GSM3502475 SRP172678 SRS4109648 GSM3502475 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 4000 gds 303502475 GSM3502475 GEO Accession GSM3502475 SRX5099279 GSM3502476 SRP172678 SRS4109649 GSM3502476 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 2500 gds 303502476 GSM3502476 GEO Accession GSM3502476 SRX5099280 GSM3502477 SRP172678 SRS4109650 GSM3502477 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 2500 gds 303502477 GSM3502477 GEO Accession GSM3502477 SRX5099281 GSM3502478 SRP172678 SRS4109651 GSM3502478 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 2500 gds 303502478 GSM3502478 GEO Accession GSM3502478 SRX5099282 GSM3502479 SRP172678 SRS4109652 GSM3502479 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 2500 gds 303502479 GSM3502479 GEO Accession GSM3502479 SRX5099283 GSM3502480 SRP172678 SRS4109653 GSM3502480 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 4000 gds 303502480 GSM3502480 GEO Accession GSM3502480 SRX5099284 GSM3502481 SRP172678 SRS4109654 GSM3502481 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 4000 gds 303502481 GSM3502481 GEO Accession GSM3502481 SRX5099285 GSM3502482 SRP172678 SRS4109655 GSM3502482 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 4000 gds 303502482 GSM3502482 GEO Accession GSM3502482 SRX5099286 GSM3502483 SRP172678 SRS4109656 GSM3502483 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 4000 gds 303502483 GSM3502483 GEO Accession GSM3502483 SRX5099287 GSM3502484 SRP172678 SRS4109657 GSM3502484 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 2500 gds 303502484 GSM3502484 GEO Accession GSM3502484 SRX5099288 GSM3502485 SRP172678 SRS4109658 GSM3502485 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 2500 gds 303502485 GSM3502485 GEO Accession GSM3502485 SRX5099289 GSM3502486 SRP172678 SRS4109659 GSM3502486 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 2500 gds 303502486 GSM3502486 GEO Accession GSM3502486 SRX5099290 GSM3502487 SRP172678 SRS4109660 GSM3502487 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 2500 gds 303502487 GSM3502487 GEO Accession GSM3502487 SRX5099291 GSM3502488 SRP172678 SRS4109661 GSM3502488 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 4000 gds 303502488 GSM3502488 GEO Accession GSM3502488 SRX5099292 GSM3502489 SRP172678 SRS4109662 GSM3502489 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 4000 gds 303502489 GSM3502489 GEO Accession GSM3502489 SRX5099293 GSM3502490 SRP172678 SRS4109663 GSM3502490 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. Illumina HiSeq 4000 gds 303502490 GSM3502490 GEO Accession GSM3502490 SRX5771662 GSM3741613 SRP172678 PRJNA508611 SRS4705522 GSM3741613 ChIP-Seq GENOMIC ChIP Histone modifications were immunoprecipitated with the respective antibody (Lee et al., 2006, Jerkovic et al., 2017) and trascription factor ChIPs were performed with the iDeal ChIP-seq kit for Transcription Factors (Cat. No. C01010055) according to guidelines. We sheared chromatin using Bioruptor until reaching a fragment size of 200-500bp. 10-15μg of chromatin was then used for each replicate chromatin modification ChIP and 20μg for CTCF and RAD21 ChIP. ChIP for H3K27ac (Diagenode: C15410174), H3K36me3 K3K36me3 (Abcam:ab9050), CTCF (Diagenode:C15410210) and RAD21 (Abcam: ab992) was then performed as in Lee et al., 2006. Libraries were prepared using the Nextera adaptors and sequenced 50 or 75bp reads. NextSeq 500 gds 303741613 GSM3741613