<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="GSM3554959" accession="SRX5227764">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX5227764</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM3554959</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM3554959: conventional CD4 T cell Lef1 ChIP-Seq; Mus musculus; ChIP-Seq</TITLE>
    <STUDY_REF accession="SRP176644" refname="GSE124823">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP176644</PRIMARY_ID>
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          <EXTERNAL_ID namespace="GEO">GSM3554959</EXTERNAL_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Conventional CD4+ T cells were sort-purified from WT C57BL/6 mice, and the Lef1-deficient CD4+ T cells were sorted from CD4-Cre+ Lef1 fl/fl mice. The cells were then fixed and sonicated to generate chromatin fragments, followed by immunoprecipitation with an anti-Lef1 antibody (C18A7, Cell Signaling Technology), which were then properly washed and immunoprecipitated DNA extracted. The DNA segments from ChIP were end-repaired and ligated to indexed Illumina adaptors, followed by amplification by PCR with a low number of cells (18-21 cycles). The resulting libraries were seqeunced with Illumina Hiseq-2000 platform.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
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    <EXPERIMENT_ATTRIBUTES>
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  <EXPERIMENT alias="GSM3554960" accession="SRX5227765">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX5227765</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM3554960</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM3554960: Lef1-deficient CD4 T cells; Mus musculus; ChIP-Seq</TITLE>
    <STUDY_REF accession="SRP176644" refname="GSE124823">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP176644</PRIMARY_ID>
      </IDENTIFIERS>
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    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS4231669">
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          <PRIMARY_ID>SRS4231669</PRIMARY_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
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        <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Conventional CD4+ T cells were sort-purified from WT C57BL/6 mice, and the Lef1-deficient CD4+ T cells were sorted from CD4-Cre+ Lef1 fl/fl mice. The cells were then fixed and sonicated to generate chromatin fragments, followed by immunoprecipitation with an anti-Lef1 antibody (C18A7, Cell Signaling Technology), which were then properly washed and immunoprecipitated DNA extracted. The DNA segments from ChIP were end-repaired and ligated to indexed Illumina adaptors, followed by amplification by PCR with a low number of cells (18-21 cycles). The resulting libraries were seqeunced with Illumina Hiseq-2000 platform.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
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          <DB>gds</DB>
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