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      <DESIGN_DESCRIPTION>An input range of 500-1000ng of gDNA was sheared to 300bp using Covaris E210 or E220; libraries were generated using Agilent SureSelect XT Library prep reagents and Kapa Biosystems HiFi DNA polymerase; whole exome enrichement using Agilent SureSelect Human All exon capture process and reagents. The capture reagent used was Agilent SureSelect XT HumanAllExon V6+UTR S07604624.  : LibraryPrep_CIDR_protocol_v5.2</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS6578441" refcenter="phs001779" refname="96992-0224050183">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS6578441</PRIMARY_ID>
          <SUBMITTER_ID namespace="phs001779">96992-0224050183</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>L170605A_C04_H170607A_C04</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Hybrid Selection</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="336" NOMINAL_SDEV="116.535544"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>250</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>126</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>0</STEP_INDEX>
          <PREV_STEP_INDEX>nil</PREV_STEP_INDEX>
          <PROGRAM>GATK IndelRealigner</PROGRAM>
          <VERSION/>
        </PIPE_SECTION>
        <PIPE_SECTION>
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>0</PREV_STEP_INDEX>
          <PROGRAM>MarkDuplicates</PROGRAM>
          <VERSION>1.109(1716)</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION>
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>bwa</PROGRAM>
          <VERSION>0.7.8-r455</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION>
          <STEP_INDEX>3</STEP_INDEX>
          <PREV_STEP_INDEX>2</PREV_STEP_INDEX>
          <PROGRAM>bwa.1</PROGRAM>
          <VERSION>0.7.8-r455</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION>
          <STEP_INDEX>4</STEP_INDEX>
          <PREV_STEP_INDEX>3</PREV_STEP_INDEX>
          <PROGRAM>GATK PrintReads</PROGRAM>
          <VERSION>3.3-0-g37228af</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
  </EXPERIMENT>
</EXPERIMENT_SET>
