SRS4426906 SAMN08443774 520 Bordetella pertussis strain BP17 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2016-03-11 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426909 SAMN08443728 520 Bordetella pertussis strain Z021 collected_by PathWest Laboratory Medicine, WA collection_date 2014-01-14 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426912 SAMN08443731 520 Bordetella pertussis strain Y493 collected_by PathWest Laboratory Medicine, WA collection_date 2013-10-03 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426915 SAMN08443730 520 Bordetella pertussis strain Y575 collected_by PathWest Laboratory Medicine, WA collection_date 2013-11-13 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426918 SAMN08443772 520 Bordetella pertussis strain BP15 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2016-01-01 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426902 SAMN08443724 520 Bordetella pertussis strain Y157 collected_by PathWest Laboratory Medicine, WA collection_date 2013-03-13 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426903 SAMN08443723 520 Bordetella pertussis strain Y664 collected_by PathWest Laboratory Medicine, WA collection_date 2013-12-31 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426904 SAMN08443722 520 Bordetella pertussis strain Y354 collected_by PathWest Laboratory Medicine, WA collection_date 2013-07-16 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426905 SAMN08443721 520 Bordetella pertussis strain Y475 collected_by PathWest Laboratory Medicine, WA collection_date 2013-09-23 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426907 SAMN08443757 520 Bordetella pertussis strain Z568 collected_by PathWest Laboratory Medicine, WA collection_date 2015-01-29 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426908 SAMN08443727 520 Bordetella pertussis strain Y527 collected_by PathWest Laboratory Medicine, WA collection_date 2013-10-22 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426910 SAMN08443725 520 Bordetella pertussis strain Y594 collected_by PathWest Laboratory Medicine, WA collection_date 2013-11-21 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426911 SAMN08443726 520 Bordetella pertussis strain Y548 collected_by PathWest Laboratory Medicine, WA collection_date 2013-10-29 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426913 SAMN08443732 520 Bordetella pertussis strain Z022 collected_by PathWest Laboratory Medicine, WA collection_date 2014-01-14 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426914 SAMN08443729 520 Bordetella pertussis strain Y626 collected_by PathWest Laboratory Medicine, WA collection_date 2013-12-06 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426916 SAMN08443771 520 Bordetella pertussis strain BP14 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2016-01-02 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426917 SAMN08443747 520 Bordetella pertussis strain Z357 collected_by PathWest Laboratory Medicine, WA collection_date 2014-08-05 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426919 SAMN08443733 520 Bordetella pertussis strain Z106 collected_by PathWest Laboratory Medicine, WA collection_date 2014-03-06 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426920 SAMN08443734 520 Bordetella pertussis strain Z074 collected_by PathWest Laboratory Medicine, WA collection_date 2014-02-13 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426921 SAMN08443753 520 Bordetella pertussis strain Z347 collected_by PathWest Laboratory Medicine, WA collection_date 2014-07-24 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426922 SAMN08443754 520 Bordetella pertussis strain Z663 collected_by PathWest Laboratory Medicine, WA collection_date 2015-03-18 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426923 SAMN08443765 520 Bordetella pertussis strain BP8 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2015-09-28 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426924 SAMN08443766 520 Bordetella pertussis strain BP9 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2015-11-15 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426925 SAMN08443749 520 Bordetella pertussis strain Z391 collected_by PathWest Laboratory Medicine, WA collection_date 2014-09-03 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426926 SAMN08443714 520 Bordetella pertussis strain Y317 collected_by PathWest Laboratory Medicine, WA collection_date 2013-06-14 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426927 SAMN08443763 520 Bordetella pertussis strain BP6 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2015-08-19 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426928 SAMN08443780 520 Bordetella pertussis strain SSCC 71252 collected_by PathWest Laboratory Medicine, WA collection_date 2017-05-22 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426929 SAMN08443750 520 Bordetella pertussis strain Z425 collected_by PathWest Laboratory Medicine, WA collection_date 2014-09-30 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426930 SAMN08443708 520 Bordetella pertussis strain Y065 collected_by PathWest Laboratory Medicine, WA collection_date 2013-02-12 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426931 SAMN08443707 520 Bordetella pertussis strain Y020 collected_by PathWest Laboratory Medicine, WA collection_date 2013-01-14 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426932 SAMN08443706 520 Bordetella pertussis strain Y019 collected_by PathWest Laboratory Medicine, WA collection_date 2013-01-14 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426933 SAMN08443705 520 Bordetella pertussis strain Y178 collected_by PathWest Laboratory Medicine, WA collection_date 2013-03-25 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426934 SAMN08443712 520 Bordetella pertussis strain Y235 collected_by PathWest Laboratory Medicine, WA collection_date 2013-04-24 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426935 SAMN08443751 520 Bordetella pertussis strain Z537 collected_by PathWest Laboratory Medicine, WA collection_date 2014-12-26 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426936 SAMN08443748 520 Bordetella pertussis strain Z177 collected_by PathWest Laboratory Medicine, WA collection_date 2014-04-23 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426937 SAMN08443709 520 Bordetella pertussis strain Y145 collected_by PathWest Laboratory Medicine, WA collection_date 2013-03-11 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426938 SAMN08443752 520 Bordetella pertussis strain Z558 collected_by PathWest Laboratory Medicine, WA collection_date 2015-01-22 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426939 SAMN08443779 520 Bordetella pertussis strain SSCC 70086 collected_by PathWest Laboratory Medicine, WA collection_date 2017-02-21 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426940 SAMN08443745 520 Bordetella pertussis strain Z664 collected_by PathWest Laboratory Medicine, WA collection_date 2015-03-11 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426941 SAMN08443758 520 Bordetella pertussis strain BP1 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2015-01-20 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426942 SAMN08443720 520 Bordetella pertussis strain Y627 collected_by PathWest Laboratory Medicine, WA collection_date 2013-12-06 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426943 SAMN08443782 520 Bordetella pertussis strain SSCC 71864 collected_by PathWest Laboratory Medicine, WA collection_date 2017-07-04 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426944 SAMN08443719 520 Bordetella pertussis strain Y663 collected_by PathWest Laboratory Medicine, WA collection_date 2013-12-31 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426945 SAMN08443718 520 Bordetella pertussis strain Y397 collected_by PathWest Laboratory Medicine, WA collection_date 2013-08-16 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426946 SAMN08443717 520 Bordetella pertussis strain Z020 collected_by PathWest Laboratory Medicine, WA collection_date 2014-01-14 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426947 SAMN08443716 520 Bordetella pertussis strain Y224 collected_by PathWest Laboratory Medicine, WA collection_date 2013-04-16 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426948 SAMN08443715 520 Bordetella pertussis strain Y258 collected_by PathWest Laboratory Medicine, WA collection_date 2013-05-09 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426949 SAMN08443736 520 Bordetella pertussis strain Z056 collected_by PathWest Laboratory Medicine, WA collection_date 2014-02-04 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426950 SAMN08443735 520 Bordetella pertussis strain Z057 collected_by PathWest Laboratory Medicine, WA collection_date 2014-02-04 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426951 SAMN08443738 520 Bordetella pertussis strain SSCC65947 collected_by PathWest Laboratory Medicine, WA collection_date 2016-04-14 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426952 SAMN08443737 520 Bordetella pertussis strain Z075 collected_by PathWest Laboratory Medicine, WA collection_date 2014-02-13 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426953 SAMN08443740 520 Bordetella pertussis strain SSCC65037 collected_by PathWest Laboratory Medicine, WA collection_date 2016-02-09 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426954 SAMN08443739 520 Bordetella pertussis strain SSCC65427 collected_by PathWest Laboratory Medicine, WA collection_date 2016-03-07 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426955 SAMN08443741 520 Bordetella pertussis strain Z619 collected_by PathWest Laboratory Medicine, WA collection_date 2015-02-23 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426956 SAMN08443742 520 Bordetella pertussis strain Z618 collected_by PathWest Laboratory Medicine, WA collection_date 2015-02-23 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426957 SAMN08443744 520 Bordetella pertussis strain SSCC65426 collected_by PathWest Laboratory Medicine, WA collection_date 2016-03-07 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426958 SAMN08443743 520 Bordetella pertussis strain SSCC65428 collected_by PathWest Laboratory Medicine, WA collection_date 2016-03-07 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426959 SAMN08443756 520 Bordetella pertussis strain Z557 collected_by PathWest Laboratory Medicine, WA collection_date 2015-01-06 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426960 SAMN08443755 520 Bordetella pertussis strain Z509 collected_by PathWest Laboratory Medicine, WA collection_date 2014-11-27 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426961 SAMN08443762 520 Bordetella pertussis strain BP5 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2015-08-06 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426962 SAMN08443760 520 Bordetella pertussis strain BP3 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2015-02-05 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426963 SAMN08443761 520 Bordetella pertussis strain BP4 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2015-07-29 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426964 SAMN08443759 520 Bordetella pertussis strain BP2 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2015-01-12 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426965 SAMN08443770 520 Bordetella pertussis strain BP13 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2016-01-01 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426966 SAMN08443769 520 Bordetella pertussis strain BP12 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2015-12-26 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426967 SAMN08443777 520 Bordetella pertussis strain SSCC 69464 collected_by PathWest Laboratory Medicine, WA collection_date 2017-01-03 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426968 SAMN08443767 520 Bordetella pertussis strain BP10 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2015-11-09 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426969 SAMN08443773 520 Bordetella pertussis strain BP16 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2016-02-18 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426970 SAMN08443768 520 Bordetella pertussis strain BP11 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2015-11-28 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426971 SAMN08443781 520 Bordetella pertussis strain SSCC 71863 collected_by PathWest Laboratory Medicine, WA collection_date 2017-07-04 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426972 SAMN08443778 520 Bordetella pertussis strain SSCC 69629 collected_by PathWest Laboratory Medicine, WA collection_date 2017-01-10 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426973 SAMN08443711 520 Bordetella pertussis strain Y275 collected_by PathWest Laboratory Medicine, WA collection_date 2013-05-20 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426974 SAMN08443710 520 Bordetella pertussis strain Y335 collected_by PathWest Laboratory Medicine, WA collection_date 2013-07-03 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426975 SAMN08443775 520 Bordetella pertussis strain SSCC 67089 collected_by PathWest Laboratory Medicine, WA collection_date 2016-06-11 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426976 SAMN08443776 520 Bordetella pertussis strain SSCC 68625 collected_by PathWest Laboratory Medicine, WA collection_date 2016-10-25 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426977 SAMN08443764 520 Bordetella pertussis strain BP7 collected_by Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW collection_date 2015-08-31 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426978 SAMN08443713 520 Bordetella pertussis strain Y124 collected_by PathWest Laboratory Medicine, WA collection_date 2013-03-05 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl SRS4426979 SAMN08443746 520 Bordetella pertussis strain Z390 collected_by PathWest Laboratory Medicine, WA collection_date 2014-09-03 geo_loc_name Australia host Homo sapiens host_disease pertussis isolation_source nasopharyngial swab lat_lon not applicable BioSampleModel Pathogen.cl