<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY center_name="JCVI" alias="JCVI ESCHERICHIA COLI E22" accession="SRP208081">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP208081</PRIMARY_ID>
      <SUBMITTER_ID namespace="JCVI">JCVI ESCHERICHIA COLI E22</SUBMITTER_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>Sequencing ESCHERICHIA COLI E22</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Other"/>
    </DESCRIPTOR>
  </STUDY>
  <STUDY center_name="BioProject" alias="PRJNA15577" accession="SRP295945">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP295945</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject" label="primary">PRJNA15577</EXTERNAL_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>Enteropathogenic Escherichia coli</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Whole Genome Sequencing"/>
      <STUDY_ABSTRACT>&lt;i&gt;&lt;B&gt;Escherichia coli&lt;/i&gt; strain E22&lt;/B&gt;. This is an enteropathogenic (EPEC) strain of &lt;i&gt;Escherichia coli&lt;/i&gt; and has been used in the development of a model system of infection in rabbits. It was provided by Drs. James B. Kaper and Edward Boedeker from the School of Medicine, University of Maryland. This strain produces a number of virulence factors including serotype O103:H2 and the locus of enterocyte effacement (LEE) type III secretion system pathogenicity island that is responsible for producing secreted effector proteins that cause the typical attachment/effacing (A/E) lesions of the epithelial layer.  Genomic sequencing included a small insert library (4-5 kb) and a large insert library (10-12 kb) from which 22,181 and 48,178 reads were sequenced, respectively. This amount of sequence represents 11X coverage of the genome. The preliminary project assembly is   composed of 109 contigs.</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>Escherichia coli E22</CENTER_PROJECT_NAME>
    </DESCRIPTOR>
    <STUDY_LINKS>
      <STUDY_LINK>
        <URL_LINK>
          <LABEL>GOLD</LABEL>
          <URL>http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gi01135</URL>
        </URL_LINK>
      </STUDY_LINK>
    </STUDY_LINKS>
  </STUDY>
</STUDY_SET>
