<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY center_name="JCVI" alias="JCVI YERSINIA PESTIS BIOVAR ORIENTALIS STR. IP275" accession="SRP210688">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP210688</PRIMARY_ID>
      <SUBMITTER_ID namespace="JCVI">JCVI YERSINIA PESTIS BIOVAR ORIENTALIS STR. IP275</SUBMITTER_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>Sequencing YERSINIA PESTIS BIOVAR ORIENTALIS STR. IP275</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Other"/>
    </DESCRIPTOR>
  </STUDY>
  <STUDY center_name="BioProject" alias="PRJNA16376" accession="SRP296059">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP296059</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject" label="primary">PRJNA16376</EXTERNAL_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>Orientalis subtype isolated in Madagascar that causes plague</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Whole Genome Sequencing"/>
      <STUDY_ABSTRACT>&lt;P&gt; &lt;B&gt;&lt;I&gt;Yersinia pestis&lt;/I&gt; biovar Orientalis IP275&lt;/B&gt;. This strain (IP275; 17/95) was isolated in Madagascar in 1995 from a human case of bubonic plague. The patient was originally treated for malaria, but the right inguinal bubo with high-grade fever (temperature, 41&lt;sup&gt;o&lt;/sup&gt;C), delirium, and prostration led to the diagnosis of plague. This strain contains a conjugative plasmid harboring resistance to eight antibiotics.  Sequencing (8X coverage) was obtained from two libraries- a medium insert library (4-6 kb; 45,619 reads), and a small insert library (3-4 kb; 13,895 reads).</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>Yersinia pestis biovar Orientalis str. IP275</CENTER_PROJECT_NAME>
    </DESCRIPTOR>
    <STUDY_LINKS>
      <STUDY_LINK>
        <XREF_LINK>
          <DB>pubmed</DB>
          <ID>9278464</ID>
        </XREF_LINK>
      </STUDY_LINK>
      <STUDY_LINK>
        <XREF_LINK>
          <DB>pubmed</DB>
          <ID>17375195</ID>
        </XREF_LINK>
      </STUDY_LINK>
      <STUDY_LINK>
        <URL_LINK>
          <LABEL>GOLD</LABEL>
          <URL>http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gi01487</URL>
        </URL_LINK>
      </STUDY_LINK>
    </STUDY_LINKS>
  </STUDY>
</STUDY_SET>
