SRS5043040 SAMN12045751 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 54 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats L 16S rRNA gene copies per ul 180.6043438 Read counts from sequencer 55196 Read counts following bioinformatics 9691 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043042 SAMN12045747 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 127 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats AL BRrepeats NA 16S rRNA gene copies per ul 2486.962712 Read counts from sequencer 64508 Read counts following bioinformatics 19066 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043044 SAMN12045558 1115523 upper respiratory tract metagenome Comparison of DNA extraction kits isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Zymobiomics mock DNA sample_type sequencing_control control identifier Zymo-DNA DNA extraction kit NA WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 235631.9779 Read counts from sequencer 39284 Read counts following bioinformatics 8726 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043046 SAMN12045757 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 57 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats AR BRrepeats NA 16S rRNA gene copies per ul 1879.67142 Read counts from sequencer 83276 Read counts following bioinformatics 25240 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043048 SAMN12045753 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 85 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats M 16S rRNA gene copies per ul 8693.228405 Read counts from sequencer 67010 Read counts following bioinformatics 20045 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043050 SAMN12045754 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 128 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats AF BRrepeats NA 16S rRNA gene copies per ul 5928.766028 Read counts from sequencer 73502 Read counts following bioinformatics 12179 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043052 SAMN12045687 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 71 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats B BRrepeats NA 16S rRNA gene copies per ul 11934.80744 Read counts from sequencer 48264 Read counts following bioinformatics 4968 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043054 SAMN12045691 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 44 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats G BRrepeats NA 16S rRNA gene copies per ul 10942.72439 Read counts from sequencer 105952 Read counts following bioinformatics 9263 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043056 SAMN12045808 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 2.274317378 Read counts from sequencer 16056 Read counts following bioinformatics 4887 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043058 SAMN12045806 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 2.181022755 Read counts from sequencer 12024 Read counts following bioinformatics 3655 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043060 SAMN12045805 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 1.60107785 Read counts from sequencer 8450 Read counts following bioinformatics 1265 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043062 SAMN12045803 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 3.883386959 Read counts from sequencer 8350 Read counts following bioinformatics 952 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043064 SAMN12045800 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 7.248757421 Read counts from sequencer 6190 Read counts following bioinformatics 1530 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043066 SAMN12045777 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 45.13291562 Read counts from sequencer 113762 Read counts following bioinformatics 4260 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043068 SAMN12045775 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 766 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats AM BRrepeats NA 16S rRNA gene copies per ul 5320.186464 Read counts from sequencer 65252 Read counts following bioinformatics 21226 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043070 SAMN12045774 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 0 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats S 16S rRNA gene copies per ul 2.923651845 Read counts from sequencer 48364 Read counts following bioinformatics 4820 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043072 SAMN12045779 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 50.88694128 Read counts from sequencer 107398 Read counts following bioinformatics 4317 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043074 SAMN12045566 1115523 upper respiratory tract metagenome Comparison of DNA extraction kits isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue HM783D mock DNA sample_type sequencing_control control identifier BEI-DNA DNA extraction kit NA WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 190799.2699 Read counts from sequencer 77088 Read counts following bioinformatics 3600 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043076 SAMN12045783 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 16.62686304 Read counts from sequencer 96952 Read counts following bioinformatics 23072 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043078 SAMN12045789 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 13.09791516 Read counts from sequencer 80704 Read counts following bioinformatics 19897 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043080 SAMN12045780 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 64.18724496 Read counts from sequencer 94476 Read counts following bioinformatics 3125 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043082 SAMN12045795 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 6.052444381 Read counts from sequencer 116198 Read counts following bioinformatics 21982 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043084 SAMN12045781 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 17.77924588 Read counts from sequencer 103066 Read counts following bioinformatics 5180 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043037 SAMN12045742 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 269 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats AI BRrepeats NA 16S rRNA gene copies per ul 3756.872749 Read counts from sequencer 99686 Read counts following bioinformatics 15637 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043086 SAMN12045760 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 168 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats V 16S rRNA gene copies per ul 5210.981762 Read counts from sequencer 44124 Read counts following bioinformatics 12600 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043039 SAMN12045743 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 298 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Induced sputum sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats U 16S rRNA gene copies per ul 6184.460847 Read counts from sequencer 62738 Read counts following bioinformatics 18461 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043088 SAMN12045762 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 226 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats T 16S rRNA gene copies per ul 17901.45588 Read counts from sequencer 53260 Read counts following bioinformatics 9654 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043041 SAMN12045750 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 54 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats L 16S rRNA gene copies per ul 225.3848037 Read counts from sequencer 55490 Read counts following bioinformatics 2042 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043090 SAMN12045581 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 1 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats I BRrepeats NA 16S rRNA gene copies per ul 628.4040015 Read counts from sequencer 58316 Read counts following bioinformatics 7209 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043043 SAMN12045748 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 153 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats W BRrepeats NA 16S rRNA gene copies per ul 39941.7082 Read counts from sequencer 45258 Read counts following bioinformatics 2710 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043092 SAMN12045764 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 1 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats AJ BRrepeats NA 16S rRNA gene copies per ul 2018.731863 Read counts from sequencer 33858 Read counts following bioinformatics 5895 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043045 SAMN12045655 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 0 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats S 16S rRNA gene copies per ul 11.49859556 Read counts from sequencer 16510 Read counts following bioinformatics 478 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043094 SAMN12045763 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 226 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats T 16S rRNA gene copies per ul 17827.67981 Read counts from sequencer 64868 Read counts following bioinformatics 12483 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043047 SAMN12045758 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 153 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats U BRrepeats NA 16S rRNA gene copies per ul 34549.79795 Read counts from sequencer 50082 Read counts following bioinformatics 4597 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043096 SAMN12045585 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 329 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Induced sputum sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats O BRrepeats NA 16S rRNA gene copies per ul 19699.35847 Read counts from sequencer 60688 Read counts following bioinformatics 12584 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043049 SAMN12045678 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 99 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats A BRrepeats NA 16S rRNA gene copies per ul 1.825440989 Read counts from sequencer 52270 Read counts following bioinformatics 5398 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043098 SAMN12045767 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 0 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats AK BRrepeats NA 16S rRNA gene copies per ul 165.3407864 Read counts from sequencer 56228 Read counts following bioinformatics 14990 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043051 SAMN12045681 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 167 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats L BRrepeats NA 16S rRNA gene copies per ul 60154.62095 Read counts from sequencer 68516 Read counts following bioinformatics 18545 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043100 SAMN12045771 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 1 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats AG BRrepeats NA 16S rRNA gene copies per ul 6.044089823 Read counts from sequencer 51896 Read counts following bioinformatics 196 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043053 SAMN12045755 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 84 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats AQ BRrepeats NA 16S rRNA gene copies per ul 2096.628547 Read counts from sequencer 102710 Read counts following bioinformatics 34704 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043102 SAMN12045769 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 0 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats W 16S rRNA gene copies per ul 14.23943997 Read counts from sequencer 27928 Read counts following bioinformatics 5447 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043055 SAMN12045756 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 308 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats AN BRrepeats NA 16S rRNA gene copies per ul 33.39529556 Read counts from sequencer 39430 Read counts following bioinformatics 7294 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043104 SAMN12045772 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 0 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats N 16S rRNA gene copies per ul 127.2150304 Read counts from sequencer 34408 Read counts following bioinformatics 5460 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043057 SAMN12045809 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 2.297738707 Read counts from sequencer 25810 Read counts following bioinformatics 7906 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043106 SAMN12045561 1115523 upper respiratory tract metagenome Comparison of DNA extraction kits isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Zymobiomics mock DNA sample_type sequencing_control control identifier Zymo-DNA DNA extraction kit NA WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 290077.0076 Read counts from sequencer 81188 Read counts following bioinformatics 18439 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043059 SAMN12045807 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 3.299679366 Read counts from sequencer 34158 Read counts following bioinformatics 9768 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043108 SAMN12045563 1115523 upper respiratory tract metagenome Comparison of DNA extraction kits isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Zymobiomics mock DNA sample_type sequencing_control control identifier Zymo-DNA DNA extraction kit NA WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 252144.5293 Read counts from sequencer 74214 Read counts following bioinformatics 3813 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043061 SAMN12045804 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 2.850409543 Read counts from sequencer 17884 Read counts following bioinformatics 2838 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043110 SAMN12045562 1115523 upper respiratory tract metagenome Comparison of DNA extraction kits isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Zymobiomics mock DNA sample_type sequencing_control control identifier Zymo-DNA DNA extraction kit NA WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 247629.8624 Read counts from sequencer 70568 Read counts following bioinformatics 3364 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043063 SAMN12045802 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 4.58215494 Read counts from sequencer 14400 Read counts following bioinformatics 1856 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043112 SAMN12045784 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 13.91424381 Read counts from sequencer 63010 Read counts following bioinformatics 2506 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043065 SAMN12045797 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 7.136811367 Read counts from sequencer 19336 Read counts following bioinformatics 4470 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043114 SAMN12045557 1115523 upper respiratory tract metagenome Comparison of DNA extraction kits isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Zymobiomics mock DNA sample_type sequencing_control control identifier Zymo-DNA DNA extraction kit NA WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 254889.4765 Read counts from sequencer 53926 Read counts following bioinformatics 12460 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043069 SAMN12045627 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 362 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Induced sputum sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats H BRrepeats NA 16S rRNA gene copies per ul 477.6895903 Read counts from sequencer 41202 Read counts following bioinformatics 2723 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043116 SAMN12045798 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 6.759584163 Read counts from sequencer 13596 Read counts following bioinformatics 3212 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043071 SAMN12045773 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 0 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats S 16S rRNA gene copies per ul 10.55611162 Read counts from sequencer 34638 Read counts following bioinformatics 7047 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043118 SAMN12045799 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 20.54179853 Read counts from sequencer 51798 Read counts following bioinformatics 12384 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043073 SAMN12045564 1115523 upper respiratory tract metagenome Comparison of DNA extraction kits isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue HM783D mock DNA sample_type sequencing_control control identifier BEI-DNA DNA extraction kit NA WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 182804.9509 Read counts from sequencer 82918 Read counts following bioinformatics 17284 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043120 SAMN12045793 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 22.83103039 Read counts from sequencer 29356 Read counts following bioinformatics 6865 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043075 SAMN12045565 1115523 upper respiratory tract metagenome Comparison of DNA extraction kits isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue HM783D mock DNA sample_type sequencing_control control identifier BEI-DNA DNA extraction kit NA WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 198160.0723 Read counts from sequencer 69094 Read counts following bioinformatics 3332 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043122 SAMN12045791 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 33.9871985 Read counts from sequencer 58918 Read counts following bioinformatics 15719 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043077 SAMN12045787 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 20.2784111 Read counts from sequencer 137360 Read counts following bioinformatics 30703 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043124 SAMN12045788 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 32.86049545 Read counts from sequencer 80612 Read counts following bioinformatics 18786 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043079 SAMN12045790 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 10.07019539 Read counts from sequencer 63862 Read counts following bioinformatics 2991 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043126 SAMN12045749 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 54 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats L 16S rRNA gene copies per ul 797.199005 Read counts from sequencer 48454 Read counts following bioinformatics 9178 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043081 SAMN12045794 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 10.34909959 Read counts from sequencer 97804 Read counts following bioinformatics 24550 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043128 SAMN12045752 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 85 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats M 16S rRNA gene copies per ul 11537.36339 Read counts from sequencer 98710 Read counts following bioinformatics 14117 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043083 SAMN12045776 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 138.6510049 Read counts from sequencer 134996 Read counts following bioinformatics 31913 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043085 SAMN12045782 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 14.60226622 Read counts from sequencer 110740 Read counts following bioinformatics 4970 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043087 SAMN12045759 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 51 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats Q 16S rRNA gene copies per ul 1053.709148 Read counts from sequencer 112914 Read counts following bioinformatics 15013 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043089 SAMN12045761 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 209 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats AP BRrepeats NA 16S rRNA gene copies per ul 28491.72727 Read counts from sequencer 91766 Read counts following bioinformatics 26278 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043091 SAMN12045765 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 0 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats Y 16S rRNA gene copies per ul 7.520161878 Read counts from sequencer 31882 Read counts following bioinformatics 3049 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043093 SAMN12045766 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 1 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats AA BRrepeats NA 16S rRNA gene copies per ul 89.62287839 Read counts from sequencer 52382 Read counts following bioinformatics 9615 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043095 SAMN12045587 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 1 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats J BRrepeats NA 16S rRNA gene copies per ul 94.73018704 Read counts from sequencer 40152 Read counts following bioinformatics 1890 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043097 SAMN12045635 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 1 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats N BRrepeats NA 16S rRNA gene copies per ul 176.1421763 Read counts from sequencer 15416 Read counts following bioinformatics 1481 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043099 SAMN12045768 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 0 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats R 16S rRNA gene copies per ul 105.9319924 Read counts from sequencer 16950 Read counts following bioinformatics 2717 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043101 SAMN12045643 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 0 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats N 16S rRNA gene copies per ul 15.84443249 Read counts from sequencer 62554 Read counts following bioinformatics 10160 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043103 SAMN12045770 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 0 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats W 16S rRNA gene copies per ul 7.839565047 Read counts from sequencer 50982 Read counts following bioinformatics 5643 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043105 SAMN12045644 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 0 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats N 16S rRNA gene copies per ul 14.55283984 Read counts from sequencer 22106 Read counts following bioinformatics 3266 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043107 SAMN12045560 1115523 upper respiratory tract metagenome Comparison of DNA extraction kits isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Zymobiomics mock DNA sample_type sequencing_control control identifier Zymo-DNA DNA extraction kit NA WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 236731.8533 Read counts from sequencer 48944 Read counts following bioinformatics 2435 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043109 SAMN12045556 1115523 upper respiratory tract metagenome Comparison of DNA extraction kits isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Zymobiomics mock DNA sample_type sequencing_control control identifier Zymo-DNA DNA extraction kit NA WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 261966.8244 Read counts from sequencer 68774 Read counts following bioinformatics 3165 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043111 SAMN12045746 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 226 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex male tissue Nasopharyngeal swab sample_type sequencing_control control identifier WRrepeat DNA extraction kit QS WRrepeats X BRrepeats NA 16S rRNA gene copies per ul 436924.7518 Read counts from sequencer 86282 Read counts following bioinformatics 5794 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043113 SAMN12045810 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 2.890004178 Read counts from sequencer 27018 Read counts following bioinformatics 8497 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043067 SAMN12045778 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 47.55630519 Read counts from sequencer 164094 Read counts following bioinformatics 6628 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043117 SAMN12045801 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 4.458387801 Read counts from sequencer 9508 Read counts following bioinformatics 2474 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043119 SAMN12045792 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 23.28899295 Read counts from sequencer 71218 Read counts following bioinformatics 16907 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043121 SAMN12045796 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 23.74611948 Read counts from sequencer 43454 Read counts following bioinformatics 11436 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043123 SAMN12045785 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 40.81021924 Read counts from sequencer 33648 Read counts following bioinformatics 9132 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043125 SAMN12045786 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Primestore storage buffer sample_type sequencing_control control identifier PS-MTM NTC DNA extraction kit QS WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 40.72485371 Read counts from sequencer 87908 Read counts following bioinformatics 23126 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043127 SAMN12045745 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 127 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats K 16S rRNA gene copies per ul 1762.990174 Read counts from sequencer 54112 Read counts following bioinformatics 11891 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043129 SAMN12045744 1115523 upper respiratory tract metagenome Sequencing validation of low biomass specimens isolate Infant age 127 biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex female tissue Nasopharyngeal swab sample_type sequencing_control control identifier BRrepeat DNA extraction kit QS WRrepeats NA BRrepeats K 16S rRNA gene copies per ul 1373.511216 Read counts from sequencer 133688 Read counts following bioinformatics 17666 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental SRS5043115 SAMN12045559 1115523 upper respiratory tract metagenome Comparison of DNA extraction kits isolate NA age NA biomaterial_provider Prof. Heather J Zar, Drakenstein Child Health Study sex not determined tissue Zymobiomics mock DNA sample_type sequencing_control control identifier Zymo-DNA DNA extraction kit NA WRrepeats NA BRrepeats NA 16S rRNA gene copies per ul 228548.7503 Read counts from sequencer 26412 Read counts following bioinformatics 5844 collection_date missing geo_loc_name missing host missing isolation_source missing lat_lon missing BioSampleModel Metagenome or environmental