SRX6478166 GSM3956905 SRP215639 SRS5128450 GSM3956905 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.0 Illumina HiSeq 4000 gds 303956905 GSM3956905 GEO Accession GSM3956905 SRX6478167 GSM3956906 SRP215639 SRS5128451 GSM3956906 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.1 Illumina HiSeq 4000 gds 303956906 GSM3956906 GEO Accession GSM3956906 SRX6478168 GSM3956907 SRP215639 SRS5128452 GSM3956907 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.2 Illumina HiSeq 4000 gds 303956907 GSM3956907 GEO Accession GSM3956907 SRX6478169 GSM3956908 SRP215639 SRS5128453 GSM3956908 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.3 Illumina HiSeq 4000 gds 303956908 GSM3956908 GEO Accession GSM3956908 SRX6478170 GSM3956909 SRP215639 SRS5128454 GSM3956909 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.4 Illumina HiSeq 4000 gds 303956909 GSM3956909 GEO Accession GSM3956909 SRX6478171 GSM3956910 SRP215639 SRS5128455 GSM3956910 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.5 Illumina HiSeq 4000 gds 303956910 GSM3956910 GEO Accession GSM3956910 SRX6478172 GSM3956911 SRP215639 SRS5128456 GSM3956911 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.6 Illumina HiSeq 4000 gds 303956911 GSM3956911 GEO Accession GSM3956911 SRX6478173 GSM3956912 SRP215639 SRS5128457 GSM3956912 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.7 Illumina HiSeq 4000 gds 303956912 GSM3956912 GEO Accession GSM3956912 SRX6478174 GSM3956913 SRP215639 SRS5128458 GSM3956913 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.8 Illumina HiSeq 4000 gds 303956913 GSM3956913 GEO Accession GSM3956913 SRX6478175 GSM3956914 SRP215639 SRS5128459 GSM3956914 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.9 Illumina HiSeq 2000 gds 303956914 GSM3956914 GEO Accession GSM3956914 SRX6478176 GSM3956915 SRP215639 SRS5128460 GSM3956915 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.10 Illumina HiSeq 4000 gds 303956915 GSM3956915 GEO Accession GSM3956915 SRX6478177 GSM3956916 SRP215639 SRS5128461 GSM3956916 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.11 Illumina HiSeq 4000 gds 303956916 GSM3956916 GEO Accession GSM3956916 SRX6478178 GSM3956917 SRP215639 SRS5128462 GSM3956917 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.12 Illumina HiSeq 4000 gds 303956917 GSM3956917 GEO Accession GSM3956917 SRX6478179 GSM3956918 SRP215639 SRS5128463 GSM3956918 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.13 Illumina HiSeq 4000 gds 303956918 GSM3956918 GEO Accession GSM3956918 SRX6478180 GSM3956919 SRP215639 SRS5128464 GSM3956919 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.14 Illumina HiSeq 2000 gds 303956919 GSM3956919 GEO Accession GSM3956919 SRX6478181 GSM3956920 SRP215639 SRS5128465 GSM3956920 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.15 Illumina HiSeq 4000 gds 303956920 GSM3956920 GEO Accession GSM3956920 SRX6478182 GSM3956921 SRP215639 SRS5128466 GSM3956921 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.16 Illumina HiSeq 2000 gds 303956921 GSM3956921 GEO Accession GSM3956921 SRX6478183 GSM3956922 SRP215639 SRS5128467 GSM3956922 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) with some modifications in the crosslinking and lysis steps as described below. Crosslinking: isolated, undigested, and pre-digested (with liquified chromatin) nuclei were not pelleted after the pre-digestion step above but were crosslinked immediately as follows: for each sample 1,250 µL volume of nuclei in the digestion buffer was transferred to a 21.875 mL mix [625 μL of 37% formaldehyde + 21.25 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked nuclei, the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Cells lysis: This step is not needed for isolated, undigested, and pre-digested (with liquified chromatin) nuclei Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.17 Illumina HiSeq 2000 gds 303956922 GSM3956922 GEO Accession GSM3956922 SRX6478184 GSM3956923 SRP215639 SRS5128468 GSM3956923 Hi-C GENOMIC other Hi-C was performed as described (Hi-C 2.0 Belaghzal et al., 2017) . For intact cells: 5 million K562 cells or nuclei were washed twice with 15 mL of HBSS and pelleted at 300 g for 10 min, then resuspended in 2.5 mL of HBSS. The sample was transferred to 20.625 mL crosslinking mix [625 μL of 37% formaldehyde + 20 mL of HBSS]. Samples were incubated at RT for 10 min on a rocking platform. Next, to stop cross-linking 1.25 mL of 2.5 M glycine was added to each sample and the mix was incubated at RT for 5 min on a rocking platform. To pellet the crosslinked cells the sample was centrifuged at 1,000 g for 10 min at 4°C. The supernatant was discarded and the pellet was washed twice with HBSS before going to the next step or storing samples at -80°C. Lysis For Hi-C with intact cells: the 5 million cross-linked cells were lysed by adding 1 mL cold lysis buffer [10 mM Tris-HCl (pH=8.0), 10 mM NaCl, 0.2% Igepal CA-630 (NP40)] and 10 µL of 100X Protease inhibitors. The sample was incubated on ice for 15 min to let the cells swell. The cells were lysed on ice using a dounce homogenizer with pestle A by moving the pest Hi-C 2.0: We prepare the library for sequencing as described in Hi-C 2.17 Illumina HiSeq 2000 gds 303956923 GSM3956923 GEO Accession GSM3956923 SRX6478185 GSM3956924 SRP215639 SRS5128469 GSM3956924 OTHER GENOMIC other DpnII-Seq was performed as described in DpnII_Seq Method DpnII-Seq was performed as described in DpnII_Seq Method Illumina HiSeq 4000 gds 303956924 GSM3956924 GEO Accession GSM3956924 SRX6478186 GSM3956925 SRP215639 SRS5128470 GSM3956925 OTHER GENOMIC other DpnII-Seq was performed as described in DpnII_Seq Method DpnII-Seq was performed as described in DpnII_Seq Method Illumina HiSeq 4000 gds 303956925 GSM3956925 GEO Accession GSM3956925 SRX6478187 GSM3956926 SRP215639 SRS5128471 GSM3956926 OTHER GENOMIC other DpnII-Seq was performed as described in DpnII_Seq Method DpnII-Seq was performed as described in DpnII_Seq Method Illumina HiSeq 4000 gds 303956926 GSM3956926 GEO Accession GSM3956926 SRX6478188 GSM3956927 SRP215639 SRS5128472 GSM3956927 OTHER GENOMIC other DpnII-Seq was performed as described in DpnII_Seq Method DpnII-Seq was performed as described in DpnII_Seq Method Illumina HiSeq 4000 gds 303956927 GSM3956927 GEO Accession GSM3956927 SRX6478189 GSM3956928 SRP215639 SRS5128473 GSM3956928 OTHER GENOMIC other DpnII-Seq was performed as described in DpnII_Seq Method DpnII-Seq was performed as described in DpnII_Seq Method Illumina HiSeq 4000 gds 303956928 GSM3956928 GEO Accession GSM3956928 SRX6478190 GSM3956929 SRP215639 SRS5128474 GSM3956929 OTHER GENOMIC other DpnII-Seq was performed as described in DpnII_Seq Method DpnII-Seq was performed as described in DpnII_Seq Method Illumina HiSeq 4000 gds 303956929 GSM3956929 GEO Accession GSM3956929 SRX6478191 GSM3956930 SRP215639 SRS5128475 GSM3956930 OTHER GENOMIC other DpnII-Seq was performed as described in DpnII_Seq Method DpnII-Seq was performed as described in DpnII_Seq Method Illumina HiSeq 4000 gds 303956930 GSM3956930 GEO Accession GSM3956930 SRX6478192 GSM3956931 SRP215639 SRS5128476 GSM3956931 OTHER GENOMIC other DpnII-Seq was performed as described in DpnII_Seq Method DpnII-Seq was performed as described in DpnII_Seq Method Illumina HiSeq 4000 gds 303956931 GSM3956931 GEO Accession GSM3956931 SRX6478193 GSM3956932 SRP215639 SRS5128477 GSM3956932 OTHER GENOMIC other DpnII-Seq was performed as described in DpnII_Seq Method DpnII-Seq was performed as described in DpnII_Seq Method Illumina HiSeq 4000 gds 303956932 GSM3956932 GEO Accession GSM3956932 SRX6478194 GSM3956933 SRP215639 SRS5128478 GSM3956933 OTHER GENOMIC other DpnII-Seq was performed as described in DpnII_Seq Method DpnII-Seq was performed as described in DpnII_Seq Method Illumina HiSeq 4000 gds 303956933 GSM3956933 GEO Accession GSM3956933 SRX6478195 GSM3956934 SRP215639 SRS5128479 GSM3956934 OTHER GENOMIC other DpnII-Seq was performed as described in DpnII_Seq Method DpnII-Seq was performed as described in DpnII_Seq Method Illumina HiSeq 4000 gds 303956934 GSM3956934 GEO Accession GSM3956934 SRX6478196 GSM3956935 SRP215639 SRS5128480 GSM3956935 OTHER GENOMIC other 5C was performed as described in “From cells to chromatin: Capturing snapshots of genome organization with 5C technology” (Ferraiuolo et al., 2012). And Decsribe in Method 5C Illumina MiSeq gds 303956935 GSM3956935 GEO Accession GSM3956935 SRX6478197 GSM3956936 SRP215639 SRS5128481 GSM3956936 OTHER GENOMIC other 5C was performed as described in “From cells to chromatin: Capturing snapshots of genome organization with 5C technology” (Ferraiuolo et al., 2012). And Decsribe in Method 5C Illumina MiSeq gds 303956936 GSM3956936 GEO Accession GSM3956936 SRX6478198 GSM3956937 SRP215639 SRS5128482 GSM3956937 OTHER GENOMIC other 5C was performed as described in “From cells to chromatin: Capturing snapshots of genome organization with 5C technology” (Ferraiuolo et al., 2012). And Decsribe in Method 5C Illumina MiSeq gds 303956937 GSM3956937 GEO Accession GSM3956937 SRX6478199 GSM3956938 SRP215639 SRS5128483 GSM3956938 OTHER GENOMIC other 5C was performed as described in “From cells to chromatin: Capturing snapshots of genome organization with 5C technology” (Ferraiuolo et al., 2012). And Decsribe in Method 5C Illumina MiSeq gds 303956938 GSM3956938 GEO Accession GSM3956938