<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="GSM4007729" accession="SRX6657700">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657700</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007729</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007729: mmRNAdevP60R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218161">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218161</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007729</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007729</ID>
          <LABEL>GSM4007729</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007730" accession="SRX6657701">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657701</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007730</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007730: mmRNAdevP60R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218162">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218162</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007730</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007730</ID>
          <LABEL>GSM4007730</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007731" accession="SRX6657702">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657702</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007731</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007731: mmRNAdevhP60R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218163">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218163</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007731</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007731</ID>
          <LABEL>GSM4007731</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007732" accession="SRX6657703">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657703</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007732</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007732: mmRNAdevhP60R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218164">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218164</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007732</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007732</ID>
          <LABEL>GSM4007732</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007733" accession="SRX6657704">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657704</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007733</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007733: mmRNAdevN60R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218165">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218165</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007733</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007733</ID>
          <LABEL>GSM4007733</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007734" accession="SRX6657705">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657705</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007734</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007734: mmRNAdevN60R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218166">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218166</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007734</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007734</ID>
          <LABEL>GSM4007734</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007735" accession="SRX6657706">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657706</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007735</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007735: mmRNAdevhN60R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218167">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218167</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007735</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007735</ID>
          <LABEL>GSM4007735</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007736" accession="SRX6657707">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657707</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007736</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007736: mmRNAdevhN60R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218168">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218168</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007736</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007736</ID>
          <LABEL>GSM4007736</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007737" accession="SRX6657708">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657708</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007737</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007737: mmRNAldP00R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218169">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218169</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007737</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007737</ID>
          <LABEL>GSM4007737</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007738" accession="SRX6657709">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657709</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007738</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007738: mmRNAldP00R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218170">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218170</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007738</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007738</ID>
          <LABEL>GSM4007738</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007739" accession="SRX6657710">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657710</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007739</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007739: mmRNAldP04R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218171">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218171</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007739</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007739</ID>
          <LABEL>GSM4007739</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007740" accession="SRX6657711">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657711</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007740</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007740: mmRNAldP04R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218172">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218172</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007740</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007740</ID>
          <LABEL>GSM4007740</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007741" accession="SRX6657712">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657712</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007741</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007741: mmRNAldP16R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218173">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218173</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007741</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007741</ID>
          <LABEL>GSM4007741</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007742" accession="SRX6657713">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657713</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007742</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007742: mmRNAldP16R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218174">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218174</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007742</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007742</ID>
          <LABEL>GSM4007742</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007743" accession="SRX6657714">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657714</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007743</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007743: mmRNAldP24R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218175">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218175</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007743</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007743</ID>
          <LABEL>GSM4007743</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007744" accession="SRX6657715">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657715</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007744</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007744: mmRNAldP24R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218176">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218176</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007744</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007744</ID>
          <LABEL>GSM4007744</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007745" accession="SRX6657716">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657716</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007745</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007745: mmRNAldP36R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218177">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218177</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007745</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007745</ID>
          <LABEL>GSM4007745</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007746" accession="SRX6657717">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657717</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007746</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007746: mmRNAldP36R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218178">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218178</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007746</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007746</ID>
          <LABEL>GSM4007746</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007747" accession="SRX6657718">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657718</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007747</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007747: mmRNAldN00R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218179">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218179</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007747</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007747</ID>
          <LABEL>GSM4007747</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007748" accession="SRX6657719">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657719</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007748</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007748: mmRNAldN00R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218180">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218180</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007748</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007748</ID>
          <LABEL>GSM4007748</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007749" accession="SRX6657720">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657720</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007749</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007749: mmRNAldN04R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218181">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218181</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007749</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007749</ID>
          <LABEL>GSM4007749</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007750" accession="SRX6657721">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657721</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007750</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007750: mmRNAldN04R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218182">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218182</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007750</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007750</ID>
          <LABEL>GSM4007750</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007751" accession="SRX6657722">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657722</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007751</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007751: mmRNAldN16R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218183">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218183</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007751</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007751</ID>
          <LABEL>GSM4007751</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007752" accession="SRX6657723">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657723</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007752</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007752: mmRNAldN16R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218184">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218184</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007752</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007752</ID>
          <LABEL>GSM4007752</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007753" accession="SRX6657724">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657724</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007753</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007753: mmRNAldN24R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218185">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218185</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007753</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007753</ID>
          <LABEL>GSM4007753</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007754" accession="SRX6657725">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657725</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007754</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007754: mmRNAldN24R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218186">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218186</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007754</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007754</ID>
          <LABEL>GSM4007754</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007755" accession="SRX6657726">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657726</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007755</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007755: mmRNAldN36R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218187">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218187</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007755</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007755</ID>
          <LABEL>GSM4007755</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007756" accession="SRX6657727">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657727</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007756</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007756: mmRNAldN36R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218188">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218188</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007756</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007756</ID>
          <LABEL>GSM4007756</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007757" accession="SRX6657728">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657728</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007757</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007757: mmRNAnmdaP03R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218189">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218189</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007757</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007757</ID>
          <LABEL>GSM4007757</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007758" accession="SRX6657729">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657729</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007758</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007758: mmRNAnmdaP03R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218190">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218190</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007758</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007758</ID>
          <LABEL>GSM4007758</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007759" accession="SRX6657730">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657730</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007759</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007759: mmRNAnmdaP06R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218191">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218191</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007759</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007759</ID>
          <LABEL>GSM4007759</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007760" accession="SRX6657731">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657731</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007760</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007760: mmRNAnmdaP06R3; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218192">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218192</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007760</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007760</ID>
          <LABEL>GSM4007760</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007761" accession="SRX6657732">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657732</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007761</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007761: mmRNAnmdaP12R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218193">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218193</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007761</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007761</ID>
          <LABEL>GSM4007761</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007762" accession="SRX6657733">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657733</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007762</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007762: mmRNAnmdaP12R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218194">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218194</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007762</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007762</ID>
          <LABEL>GSM4007762</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007763" accession="SRX6657734">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657734</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007763</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007763: mmRNAnmdaP36R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218195">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218195</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007763</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007763</ID>
          <LABEL>GSM4007763</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007764" accession="SRX6657735">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657735</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007764</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007764: mmRNAnmdaP36R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218196">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218196</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007764</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007764</ID>
          <LABEL>GSM4007764</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007765" accession="SRX6657736">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657736</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007765</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007765: mmRNAnmdaP48R3; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218197">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218197</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007765</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007765</ID>
          <LABEL>GSM4007765</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007766" accession="SRX6657737">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657737</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007766</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007766: mmRNAnmdaP48R4; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218198">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218198</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007766</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007766</ID>
          <LABEL>GSM4007766</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007767" accession="SRX6657738">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657738</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007767</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007767: mmRNAnmdaN03R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218199">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218199</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007767</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007767</ID>
          <LABEL>GSM4007767</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007768" accession="SRX6657739">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657739</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007768</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007768: mmRNAnmdaN03R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218200">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218200</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007768</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007768</ID>
          <LABEL>GSM4007768</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007769" accession="SRX6657740">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657740</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007769</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007769: mmRNAnmdaN06R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218201">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218201</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007769</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007769</ID>
          <LABEL>GSM4007769</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007770" accession="SRX6657741">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657741</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007770</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007770: mmRNAnmdaN06R3; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218202">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218202</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007770</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007770</ID>
          <LABEL>GSM4007770</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007771" accession="SRX6657742">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657742</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007771</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007771: mmRNAnmdaN12R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218203">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218203</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007771</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007771</ID>
          <LABEL>GSM4007771</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007772" accession="SRX6657743">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657743</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007772</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007772: mmRNAnmdaN12R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218204">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218204</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007772</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007772</ID>
          <LABEL>GSM4007772</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007773" accession="SRX6657744">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657744</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007773</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007773: mmRNAnmdaN36R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218205">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218205</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007773</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007773</ID>
          <LABEL>GSM4007773</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007774" accession="SRX6657745">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657745</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007774</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007774: mmRNAnmdaN36R2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218206">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218206</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007774</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007774</ID>
          <LABEL>GSM4007774</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007775" accession="SRX6657746">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657746</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007775</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007775: mmRNAnmdaN48R1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218207">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218207</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007775</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007775</ID>
          <LABEL>GSM4007775</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007776" accession="SRX6657747">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657747</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007776</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007776: mmRNAnmdaN48R3; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218208">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218208</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007776</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007776</ID>
          <LABEL>GSM4007776</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007777" accession="SRX6657748">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657748</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007777</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007777: zfRNAldP00R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218209">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218209</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007777</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007777</ID>
          <LABEL>GSM4007777</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007778" accession="SRX6657749">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657749</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007778</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007778: zfRNAldP00R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218210">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218210</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007778</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007778</ID>
          <LABEL>GSM4007778</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007779" accession="SRX6657750">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657750</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007779</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007779: zfRNAldP36R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218211">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218211</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007779</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007779</ID>
          <LABEL>GSM4007779</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007780" accession="SRX6657751">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657751</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007780</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007780: zfRNAldP36R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218212">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218212</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007780</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007780</ID>
          <LABEL>GSM4007780</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007781" accession="SRX6657752">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657752</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007781</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007781: zfRNAldN00R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218213">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218213</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007781</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007781</ID>
          <LABEL>GSM4007781</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007782" accession="SRX6657753">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657753</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007782</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007782: zfRNAldN00R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218214">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218214</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007782</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007782</ID>
          <LABEL>GSM4007782</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007783" accession="SRX6657754">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657754</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007783</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007783: zfRNAldN36R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218215">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218215</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007783</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007783</ID>
          <LABEL>GSM4007783</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007784" accession="SRX6657755">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657755</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007784</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007784: zfRNAldN36R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218216">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218216</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007784</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007784</ID>
          <LABEL>GSM4007784</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007785" accession="SRX6657756">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657756</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007785</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007785: zfRNAadtP00R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218217">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218217</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007785</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007785</ID>
          <LABEL>GSM4007785</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007786" accession="SRX6657757">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657757</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007786</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007786: zfRNAadtP00R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218218">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218218</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007786</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007786</ID>
          <LABEL>GSM4007786</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007787" accession="SRX6657758">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657758</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007787</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007787: zfRNAadtN00R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218219">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218219</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007787</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007787</ID>
          <LABEL>GSM4007787</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007788" accession="SRX6657759">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657759</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007788</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007788: zfRNAadtN00R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218220">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218220</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007788</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007788</ID>
          <LABEL>GSM4007788</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007789" accession="SRX6657760">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657760</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007789</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007789: zfRNAldtP04R1R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218221">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218221</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007789</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007789</ID>
          <LABEL>GSM4007789</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007790" accession="SRX6657761">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657761</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007790</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007790: zfRNAldtP04R1R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218222">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218222</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007790</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007790</ID>
          <LABEL>GSM4007790</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007791" accession="SRX6657762">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657762</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007791</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007791: zfRNAldtP04R2R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218223">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218223</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007791</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007791</ID>
          <LABEL>GSM4007791</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007792" accession="SRX6657763">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657763</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007792</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007792: zfRNAldtP04R2R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218224">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218224</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007792</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007792</ID>
          <LABEL>GSM4007792</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007793" accession="SRX6657764">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657764</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007793</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007793: zfRNAldtP10R1R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218225">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218225</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007793</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007793</ID>
          <LABEL>GSM4007793</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007794" accession="SRX6657765">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657765</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007794</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007794: zfRNAldtP10R3R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218226">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218226</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007794</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007794</ID>
          <LABEL>GSM4007794</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007795" accession="SRX6657766">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657766</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007795</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007795: zfRNAldtP10R3R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218227">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218227</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007795</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007795</ID>
          <LABEL>GSM4007795</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007796" accession="SRX6657767">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657767</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007796</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007796: zfRNAldtP20R1R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218228">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218228</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007796</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007796</ID>
          <LABEL>GSM4007796</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007797" accession="SRX6657768">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657768</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007797</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007797: zfRNAldtP20R3; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218229">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218229</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007797</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007797</ID>
          <LABEL>GSM4007797</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007798" accession="SRX6657769">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657769</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007798</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007798: zfRNAldtP36R1R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218230">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218230</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007798</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007798</ID>
          <LABEL>GSM4007798</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007799" accession="SRX6657770">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657770</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007799</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007799: zfRNAldtP36R2R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218231">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218231</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007799</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007799</ID>
          <LABEL>GSM4007799</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007800" accession="SRX6657771">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657771</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007800</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007800: zfRNAldtN04R1R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218232">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218232</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007800</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007800</ID>
          <LABEL>GSM4007800</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007801" accession="SRX6657772">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657772</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007801</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007801: zfRNAldtN04R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218233">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218233</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007801</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007801</ID>
          <LABEL>GSM4007801</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007802" accession="SRX6657773">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657773</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007802</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007802: zfRNAldtN10R1R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218234">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218234</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007802</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007802</ID>
          <LABEL>GSM4007802</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007803" accession="SRX6657774">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657774</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007803</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007803: zfRNAldtN10R1R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218235">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218235</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007803</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007803</ID>
          <LABEL>GSM4007803</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007804" accession="SRX6657775">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657775</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007804</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007804: zfRNAldtN10R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218236">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218236</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007804</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007804</ID>
          <LABEL>GSM4007804</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007805" accession="SRX6657776">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657776</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007805</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007805: zfRNAldtN20R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218237">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218237</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007805</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007805</ID>
          <LABEL>GSM4007805</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007806" accession="SRX6657777">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657777</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007806</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007806: zfRNAldtN20R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218238">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218238</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007806</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007806</ID>
          <LABEL>GSM4007806</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007807" accession="SRX6657778">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657778</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007807</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007807: zfRNAldtN36R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218239">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218239</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007807</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007807</ID>
          <LABEL>GSM4007807</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007808" accession="SRX6657779">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657779</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007808</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007808: zfRNAldtN36R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218240">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218240</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007808</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007808</ID>
          <LABEL>GSM4007808</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007809" accession="SRX6657780">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657780</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007809</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007809: zfRNAnmdaP04R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218241">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218241</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007809</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007809</ID>
          <LABEL>GSM4007809</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007810" accession="SRX6657781">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657781</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007810</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007810: zfRNAnmdaP04R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218242">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218242</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007810</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007810</ID>
          <LABEL>GSM4007810</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007811" accession="SRX6657782">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657782</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007811</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007811: zfRNAnmdaP10R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218243">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218243</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007811</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007811</ID>
          <LABEL>GSM4007811</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007812" accession="SRX6657783">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657783</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007812</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007812: zfRNAnmdaP10R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218244">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218244</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007812</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007812</ID>
          <LABEL>GSM4007812</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007813" accession="SRX6657784">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657784</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007813</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007813: zfRNAnmdaP20R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218245">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218245</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007813</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007813</ID>
          <LABEL>GSM4007813</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007814" accession="SRX6657785">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657785</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007814</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007814: zfRNAnmdaP20R2R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218246">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218246</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007814</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007814</ID>
          <LABEL>GSM4007814</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007815" accession="SRX6657786">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657786</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007815</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007815: zfRNAnmdaP20R2R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218247">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218247</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007815</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007815</ID>
          <LABEL>GSM4007815</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007816" accession="SRX6657787">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657787</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007816</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007816: zfRNAnmdaP36R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218248">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218248</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007816</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007816</ID>
          <LABEL>GSM4007816</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007817" accession="SRX6657788">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657788</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007817</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007817: zfRNAnmdaP36R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218249">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218249</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007817</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007817</ID>
          <LABEL>GSM4007817</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007818" accession="SRX6657789">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657789</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007818</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007818: zfRNAnmdaN04R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218250">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218250</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007818</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007818</ID>
          <LABEL>GSM4007818</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007819" accession="SRX6657790">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657790</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007819</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007819: zfRNAnmdaN04R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218251">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218251</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007819</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007819</ID>
          <LABEL>GSM4007819</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007820" accession="SRX6657791">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657791</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007820</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007820: zfRNAnmdaN10R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218252">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218252</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007820</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007820</ID>
          <LABEL>GSM4007820</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007821" accession="SRX6657792">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657792</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007821</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007821: zfRNAnmdaN10R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218253">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218253</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007821</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007821</ID>
          <LABEL>GSM4007821</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007822" accession="SRX6657793">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657793</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007822</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007822: zfRNAnmdaN20R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218254">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218254</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007822</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007822</ID>
          <LABEL>GSM4007822</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007823" accession="SRX6657794">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657794</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007823</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007823: zfRNAnmdaN20R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218255">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218255</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007823</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007823</ID>
          <LABEL>GSM4007823</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007824" accession="SRX6657795">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657795</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007824</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007824: zfRNAnmdaN36R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218256">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218256</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007824</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007824</ID>
          <LABEL>GSM4007824</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007825" accession="SRX6657796">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657796</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007825</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007825: zfRNAnmdaN36R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218257">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218257</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007825</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007825</ID>
          <LABEL>GSM4007825</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007826" accession="SRX6657797">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657797</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007826</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007826: zfRNAnmdahP20R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218258">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218258</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007826</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007826</ID>
          <LABEL>GSM4007826</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007827" accession="SRX6657798">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657798</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007827</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007827: zfRNAnmdahP20R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218259">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218259</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007827</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007827</ID>
          <LABEL>GSM4007827</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007828" accession="SRX6657799">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657799</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007828</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007828: zfRNAnmdahP36R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218260">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218260</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007828</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007828</ID>
          <LABEL>GSM4007828</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007829" accession="SRX6657800">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657800</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007829</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007829: zfRNAnmdahP36R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218261">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218261</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007829</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007829</ID>
          <LABEL>GSM4007829</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007830" accession="SRX6657801">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657801</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007830</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007830: zfRNAnmdahN20R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218262">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218262</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007830</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007830</ID>
          <LABEL>GSM4007830</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007831" accession="SRX6657802">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657802</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007831</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007831: zfRNAnmdahN20R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218263">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218263</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007831</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007831</ID>
          <LABEL>GSM4007831</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007832" accession="SRX6657803">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657803</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007832</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007832: zfRNAnmdahN36R1; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218264">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218264</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007832</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007832</ID>
          <LABEL>GSM4007832</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007833" accession="SRX6657804">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657804</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007833</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007833: zfRNAnmdahN36R2; Danio rerio; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218265">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218265</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007833</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007833</ID>
          <LABEL>GSM4007833</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007834" accession="SRX6657805">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657805</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007834</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007834: mmATACdevP60R1; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218266">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218266</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007834</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007834</ID>
          <LABEL>GSM4007834</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007835" accession="SRX6657806">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657806</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007835</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007835: mmATACdevP60R2; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218267">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218267</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007835</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007835</ID>
          <LABEL>GSM4007835</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007836" accession="SRX6657807">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657807</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007836</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007836: mmATACnmdaP03R1; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218268">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218268</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007836</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007836</ID>
          <LABEL>GSM4007836</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007837" accession="SRX6657808">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657808</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007837</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007837: mmATACnmdaP03R2; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218269">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218269</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007837</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007837</ID>
          <LABEL>GSM4007837</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007838" accession="SRX6657809">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657809</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007838</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007838: mmATACnmdaP06R1; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218270">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218270</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007838</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007838</ID>
          <LABEL>GSM4007838</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007839" accession="SRX6657810">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657810</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007839</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007839: mmATACnmdaP06R2; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218271">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218271</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007839</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007839</ID>
          <LABEL>GSM4007839</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007840" accession="SRX6657811">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657811</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007840</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007840: mmATACnmdaP12R1; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218272">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218272</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007840</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007840</ID>
          <LABEL>GSM4007840</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007841" accession="SRX6657812">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657812</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007841</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007841: mmATACnmdaP12R2; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218273">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218273</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007841</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007841</ID>
          <LABEL>GSM4007841</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007842" accession="SRX6657813">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657813</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007842</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007842: mmATACnmdaP48R2; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218274">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218274</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007842</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007842</ID>
          <LABEL>GSM4007842</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007843" accession="SRX6657814">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657814</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007843</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007843: mmATACnmdaP48R3; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218275">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218275</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007843</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007843</ID>
          <LABEL>GSM4007843</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007844" accession="SRX6657815">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657815</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007844</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007844: mmATACldP00R1; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218276">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218276</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007844</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007844</ID>
          <LABEL>GSM4007844</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007845" accession="SRX6657816">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657816</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007845</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007845: mmATACldP00R2; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218277">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218277</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007845</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007845</ID>
          <LABEL>GSM4007845</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007846" accession="SRX6657817">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657817</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007846</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007846: mmATACldP10R1; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218278">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218278</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007846</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007846</ID>
          <LABEL>GSM4007846</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007847" accession="SRX6657818">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657818</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007847</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007847: mmATACldP10R2; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218279">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218279</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007847</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007847</ID>
          <LABEL>GSM4007847</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007848" accession="SRX6657819">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657819</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007848</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007848: mmATACldP16R1; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218280">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218280</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007848</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007848</ID>
          <LABEL>GSM4007848</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007849" accession="SRX6657820">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657820</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007849</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007849: mmATACldP16R2; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218281">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218281</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007849</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007849</ID>
          <LABEL>GSM4007849</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007850" accession="SRX6657821">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657821</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007850</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007850: mmATACldP24R2; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218282">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218282</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007850</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007850</ID>
          <LABEL>GSM4007850</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007851" accession="SRX6657822">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657822</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007851</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007851: mmATACldP24R3; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218283">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218283</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007851</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007851</ID>
          <LABEL>GSM4007851</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007852" accession="SRX6657823">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657823</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007852</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007852: mmATACldP36R1; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218284">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218284</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007852</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007852</ID>
          <LABEL>GSM4007852</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007853" accession="SRX6657824">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657824</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007853</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007853: mmATACldP36R2; Mus musculus; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218285">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218285</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007853</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007853</ID>
          <LABEL>GSM4007853</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007854" accession="SRX6657825">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657825</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007854</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007854: zfATACadAbP00R1; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218286">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218286</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007854</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007854</ID>
          <LABEL>GSM4007854</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007855" accession="SRX6657826">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657826</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007855</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007855: zfATACadAbP00R2; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218287">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218287</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007855</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007855</ID>
          <LABEL>GSM4007855</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007856" accession="SRX6657827">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657827</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007856</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007856: zfATACnmdahP04R1; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218288">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218288</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007856</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007856</ID>
          <LABEL>GSM4007856</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007857" accession="SRX6657828">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657828</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007857</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007857: zfATACnmdahP04R2; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218289">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218289</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007857</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007857</ID>
          <LABEL>GSM4007857</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007858" accession="SRX6657829">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657829</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007858</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007858: zfATACnmdahP10R1; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218290">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218290</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007858</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007858</ID>
          <LABEL>GSM4007858</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007859" accession="SRX6657830">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657830</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007859</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007859: zfATACnmdahP10R2; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218291">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218291</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007859</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007859</ID>
          <LABEL>GSM4007859</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007860" accession="SRX6657831">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657831</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007860</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007860: zfATACnmdahP20R1; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218292">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218292</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007860</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007860</ID>
          <LABEL>GSM4007860</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007861" accession="SRX6657832">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657832</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007861</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007861: zfATACnmdahP20R2; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218293">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218293</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007861</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007861</ID>
          <LABEL>GSM4007861</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007862" accession="SRX6657833">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657833</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007862</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007862: zfATACnmdahP36R1; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218294">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218294</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007862</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007862</ID>
          <LABEL>GSM4007862</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007863" accession="SRX6657834">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657834</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007863</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007863: zfATACnmdahP36R2; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218295">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218295</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007863</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007863</ID>
          <LABEL>GSM4007863</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007864" accession="SRX6657835">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657835</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007864</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007864: zfATACldtP00R1; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218296">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218296</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007864</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007864</ID>
          <LABEL>GSM4007864</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007865" accession="SRX6657836">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657836</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007865</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007865: zfATACldtP00R2; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218297">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218297</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007865</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007865</ID>
          <LABEL>GSM4007865</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007866" accession="SRX6657837">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657837</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007866</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007866: zfATACldtP04R1; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218298">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218298</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007866</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007866</ID>
          <LABEL>GSM4007866</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007867" accession="SRX6657838">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657838</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007867</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007867: zfATACldtP04R2; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218299">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218299</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007867</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007867</ID>
          <LABEL>GSM4007867</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007868" accession="SRX6657839">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657839</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007868</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007868: zfATACldtP10R1; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218300">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218300</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007868</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007868</ID>
          <LABEL>GSM4007868</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007869" accession="SRX6657840">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657840</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007869</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007869: zfATACldtP10R2; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218301">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218301</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007869</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007869</ID>
          <LABEL>GSM4007869</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007870" accession="SRX6657841">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657841</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007870</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007870: zfATACldtP20R1; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218302">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218302</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007870</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007870</ID>
          <LABEL>GSM4007870</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007871" accession="SRX6657842">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657842</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007871</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007871: zfATACldtP20R2; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218303">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218303</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007871</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007871</ID>
          <LABEL>GSM4007871</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007872" accession="SRX6657843">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657843</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007872</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007872: zfATACldtP36R1; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218304">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218304</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007872</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007872</ID>
          <LABEL>GSM4007872</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM4007873" accession="SRX6657844">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX6657844</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM4007873</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM4007873: zfATACldtP36R2; Danio rerio; ATAC-seq</TITLE>
    <STUDY_REF accession="SRP217505" refname="GSE135406">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP217505</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS5218305">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS5218305</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM4007873</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ATAC-seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from both GFP-positive and GFP-negative cell fractions using miRNAeasy Mini Kit (#217004, Qiagen). Ribosomal RNA was depleted, and total RNA was captured from the RNA samples using Illumina TruSeq Stranded RNA LT kit Ribo-ZeroTM Gold (# 15032619, Illumina). For tagmentation, cell nuclei were incubated with 2.5 UL enzyme in 50UL total volume at 37°C in a thermocycler (Illumnia Nextera DNA library prep kit, #FC1211030). DNA was cleaned up using MinElute PCR purification kit (#28006, Qiagen) and eluted in 10UL of EB buffer. Flow-sorted RNA samples were sent to the Deep Sequencing and Microarray Core (Johns Hopkins University) for library preparation and sequencing. Around 8-10 libraries were pooled and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run, resulting in ~45-55 million reads per library. Sorted cells (~50k-75k) from GFP-positive samples were used for ATAC library preparation. Completed ATAC-Seq libraries were then analyzed by Fragment Bioanalyzer and sequenced for paired-end 75 cycles using the NextSeq 500 system with ~400-500 million reads per run.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>304007873</ID>
          <LABEL>GSM4007873</LABEL>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
  </EXPERIMENT>
</EXPERIMENT_SET>
