Source Name Characteristics[sample_name] Characteristics[organism] Characteristics[taxonomy_id] Characteristics[strain] Characteristics[isolate] Characteristics[age] Characteristics[cell_line] Characteristics[cell_type] Characteristics[dev_stage] Characteristics[genetic_modification] Characteristics[genotype] Characteristics[sex] Characteristics[tissue] Comment[BioSample] Comment[sample_title] Comment[description] Protocol REF Protocol REF Protocol REF Extract Name Material Type Protocol REF Labeled Extract Name Label Protocol REF Assay Name Technology Type Array Design REF Protocol REF Array Data File Protocol REF Derived Array Data Matrix File Factor Value[genotype] LiverUT7-4 LiverUT7-4 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm liver_#7 13_months gene_knock_out Parp-1-/- female liver SAMD00160850 LiverUT7-4 replicate_#2 P-GEAD-124 P-GEAD-125 P-GEAD-130 LiverUT7-4 total RNA P-GEAD-126 LiverUT7-4 biotin, streptavidin R-phycoerythrin P-GEAD-127 LiverUT7-4 array assay A-AFFY-6 P-GEAD-128 LiverUT7-4.txt P-GEAD-129 summary.tar.gz Parp-1-/- LiverUntreated6-2 LiverUntreated6-2 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm liver_#6 13_months gene_knock_out Parp-1-/- female liver SAMD00160851 LiverUntreated6-2 replicate_#3 P-GEAD-124 P-GEAD-125 P-GEAD-130 LiverUntreated6-2 total RNA P-GEAD-126 LiverUntreated6-2 biotin, streptavidin R-phycoerythrin P-GEAD-127 LiverUntreated6-2 array assay A-AFFY-6 P-GEAD-128 LiverUntreated6-2.txt P-GEAD-129 summary.tar.gz Parp-1-/- LiverUntreated1-1 LiverUntreated1-1 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm liver_#1 13_months None Parp-1+/+ female liver SAMD00160852 LiverUntreated1-1 replicate_#3 P-GEAD-124 P-GEAD-125 P-GEAD-130 LiverUntreated1-1 total RNA P-GEAD-126 LiverUntreated1-1 biotin, streptavidin R-phycoerythrin P-GEAD-127 LiverUntreated1-1 array assay A-AFFY-6 P-GEAD-128 LiverUntreated1-1.txt P-GEAD-129 summary.tar.gz Parp-1+/+ LiverUntreated7-2 LiverUntreated7-2 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm liver_#7 13 months gene_knock_out Parp-1-/- female liver SAMD00160853 LiverUntreated7-2 replicate_#3 P-GEAD-124 P-GEAD-125 P-GEAD-130 LiverUntreated7-2 total RNA P-GEAD-126 LiverUntreated7-2 biotin, streptavidin R-phycoerythrin P-GEAD-127 LiverUntreated7-2 array assay A-AFFY-6 P-GEAD-128 LiverUntreated7-2.txt P-GEAD-129 summary.tar.gz Parp-1-/- LiverUntreated2-2 LiverUntreated2-2 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm liver_#2 13_months None Parp-1+/+ female liver SAMD00160854 LiverUntreated2-2 replicate_#3 P-GEAD-124 P-GEAD-125 P-GEAD-130 LiverUntreated2-2 total RNA P-GEAD-126 LiverUntreated2-2 biotin, streptavidin R-phycoerythrin P-GEAD-127 LiverUntreated2-2 array assay A-AFFY-6 P-GEAD-128 LiverUntreated2-2.txt P-GEAD-129 summary.tar.gz Parp-1+/+ Pmef1-1 Pmef1-1 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm PMEF1 primary_embryonic_fibroblasts E13.5 None Parp-1+/+ female Whole_embryo SAMD00160855 Pmef1-1 replicate_#1 P-GEAD-124 P-GEAD-125 P-GEAD-130 Pmef1-1 total RNA P-GEAD-126 Pmef1-1 biotin, streptavidin R-phycoerythrin P-GEAD-127 Pmef1-1 array assay A-AFFY-6 P-GEAD-128 Pmef1-1.txt P-GEAD-129 summary.tar.gz Parp-1+/+ Pmef3-1 Pmef3-1 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm PMEF3 primary_embryonic_fibroblasts E13.5 None Parp-1+/+ female Whole_embryo SAMD00160856 Pmef3-1 replicate_#1 P-GEAD-124 P-GEAD-125 P-GEAD-130 Pmef3-1 total RNA P-GEAD-126 Pmef3-1 biotin, streptavidin R-phycoerythrin P-GEAD-127 Pmef3-1 array assay A-AFFY-6 P-GEAD-128 Pmef3-1.txt P-GEAD-129 summary.tar.gz Parp-1+/+ Pmef4-6 Pmef4-6 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm PMEF4 primary_embryonic_fibroblasts E13.5 None Parp-1+/+ male Whole_embryo SAMD00160857 Pmef4-6 replicate_#1 P-GEAD-124 P-GEAD-125 P-GEAD-130 Pmef4-6 total RNA P-GEAD-126 Pmef4-6 biotin, streptavidin R-phycoerythrin P-GEAD-127 Pmef4-6 array assay A-AFFY-6 P-GEAD-128 Pmef4-6.txt P-GEAD-129 summary.tar.gz Parp-1+/+ Pmef14-1 Pmef14-1 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm PMEF14 primary_embryonic_fibroblasts E13.5 gene_knock_out Parp-1-/- male Whole_embryo SAMD00160858 Pmef14-1 replicate_#1 P-GEAD-124 P-GEAD-125 P-GEAD-130 Pmef14-1 total RNA P-GEAD-126 Pmef14-1 biotin, streptavidin R-phycoerythrin P-GEAD-127 Pmef14-1 array assay A-AFFY-6 P-GEAD-128 Pmef14-1.txt P-GEAD-129 summary.tar.gz Parp-1-/- Pmef15-1 Pmef15-1 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm PMEF15 primary_embryonic_fibroblasts E13.5 gene_knock_out Parp-1-/- male Whole_embryo SAMD00160859 Pmef15-1 replicate_#1 P-GEAD-124 P-GEAD-125 P-GEAD-130 Pmef15-1 total RNA P-GEAD-126 Pmef15-1 biotin, streptavidin R-phycoerythrin P-GEAD-127 Pmef15-1 array assay A-AFFY-6 P-GEAD-128 Pmef15-1.txt P-GEAD-129 summary.tar.gz Parp-1-/- Pmef5-1 Pmef5-1 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm PMEF5 primary_embryonic_fibroblasts E13.5 gene_knock_out Parp-1-/- female Whole_embryo SAMD00160860 Pmef5-1 replicate_#1 P-GEAD-124 P-GEAD-125 P-GEAD-130 Pmef5-1 total RNA P-GEAD-126 Pmef5-1 biotin, streptavidin R-phycoerythrin P-GEAD-127 Pmef5-1 array assay A-AFFY-6 P-GEAD-128 Pmef5-1.txt P-GEAD-129 summary.tar.gz Parp-1-/- ES1 ES1 Mus musculus 10090 J1 J1 Embryonic_stem_cells None Parp-1+/+ male SAMD00160861 ES1 replicate_#1 P-GEAD-124 P-GEAD-125 P-GEAD-130 ES1 total RNA P-GEAD-126 ES1 biotin, streptavidin R-phycoerythrin P-GEAD-127 ES1 array assay A-AFFY-6 P-GEAD-128 ES1.txt P-GEAD-129 summary.tar.gz Parp-1+/+ ES2 ES2 Mus musculus 10090 J1 J1 Embryonic_stem_cells None Parp-1+/+ male SAMD00160862 ES2 replicate_#2 P-GEAD-124 P-GEAD-125 P-GEAD-130 ES2 total RNA P-GEAD-126 ES2 biotin, streptavidin R-phycoerythrin P-GEAD-127 ES2 array assay A-AFFY-6 P-GEAD-128 ES2.txt P-GEAD-129 summary.tar.gz Parp-1+/+ ES3 ES3 Mus musculus 10090 J1 J1 Embryonic_stem_cells None Parp-1+/+ male SAMD00160863 ES3 replicate_#3 P-GEAD-124 P-GEAD-125 P-GEAD-130 ES3 total RNA P-GEAD-126 ES3 biotin, streptavidin R-phycoerythrin P-GEAD-127 ES3 array assay A-AFFY-6 P-GEAD-128 ES3.txt P-GEAD-129 summary.tar.gz Parp-1+/+ ES4 ES4 Mus musculus 10090 210-58 210-58 Embryonic_stem_cells gene_knock_out Parp-1-/- male SAMD00160864 ES4 replicate_#1 P-GEAD-124 P-GEAD-125 P-GEAD-130 ES4 total RNA P-GEAD-126 ES4 biotin, streptavidin R-phycoerythrin P-GEAD-127 ES4 array assay A-AFFY-6 P-GEAD-128 ES4.txt P-GEAD-129 summary.tar.gz Parp-1-/- ES5 ES5 Mus musculus 10090 210-58 210-58 Embryonic_stem_cells gene_knock_out Parp-1-/- male SAMD00160865 ES5 replicate_#2 P-GEAD-124 P-GEAD-125 P-GEAD-130 ES5 total RNA P-GEAD-126 ES5 biotin, streptavidin R-phycoerythrin P-GEAD-127 ES5 array assay A-AFFY-6 P-GEAD-128 ES5.txt P-GEAD-129 summary.tar.gz Parp-1-/- ES6 ES6 Mus musculus 10090 210-58 210-58 Embryonic_stem_cells gene_knock_out Parp-1-/- male SAMD00160866 ES6 replicate_#3 P-GEAD-124 P-GEAD-125 P-GEAD-130 ES6 total RNA P-GEAD-126 ES6 biotin, streptavidin R-phycoerythrin P-GEAD-127 ES6 array assay A-AFFY-6 P-GEAD-128 ES6.txt P-GEAD-129 summary.tar.gz Parp-1-/- LiverUT1-3 LiverUT1-3 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm liver_#1 13_months None Parp-1+/+ female liver SAMD00160867 LiverUT1-3 replicate_#1 P-GEAD-124 P-GEAD-125 P-GEAD-130 LiverUT1-3 total RNA P-GEAD-126 LiverUT1-3 biotin, streptavidin R-phycoerythrin P-GEAD-127 LiverUT1-3 array assay A-AFFY-6 P-GEAD-128 LiverUT1-3.txt P-GEAD-129 summary.tar.gz Parp-1+/+ ES7 ES7 Mus musculus 10090 226-47 226-47 Embryonic_stem_cells gene_knock_out Parp-1-/- male SAMD00160868 ES7 replicate_#1 P-GEAD-124 P-GEAD-125 P-GEAD-130 ES7 total RNA P-GEAD-126 ES7 biotin, streptavidin R-phycoerythrin P-GEAD-127 ES7 array assay A-AFFY-6 P-GEAD-128 ES7.txt P-GEAD-129 summary.tar.gz Parp-1-/- LiverUT1-4 LiverUT1-4 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm liver_#1 13_months None Parp-1+/+ female liver SAMD00160869 LiverUT1-4 replicate_#2 P-GEAD-124 P-GEAD-125 P-GEAD-130 LiverUT1-4 total RNA P-GEAD-126 LiverUT1-4 biotin, streptavidin R-phycoerythrin P-GEAD-127 LiverUT1-4 array assay A-AFFY-6 P-GEAD-128 LiverUT1-4.txt P-GEAD-129 summary.tar.gz Parp-1+/+ ES9 ES9 Mus musculus 10090 226-47 226-47 Embryonic_stem_cells gene_knock_out Parp-1-/- male SAMD00160870 ES9 replicate_#2 P-GEAD-124 P-GEAD-125 P-GEAD-130 ES9 total RNA P-GEAD-126 ES9 biotin, streptavidin R-phycoerythrin P-GEAD-127 ES9 array assay A-AFFY-6 P-GEAD-128 ES9.txt P-GEAD-129 summary.tar.gz Parp-1-/- LiverUT2-3 LiverUT2-3 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm liver_#2 13_months None Parp-1+/+ female liver SAMD00160871 LiverUT2-3 replicate_#1 P-GEAD-124 P-GEAD-125 P-GEAD-130 LiverUT2-3 total RNA P-GEAD-126 LiverUT2-3 biotin, streptavidin R-phycoerythrin P-GEAD-127 LiverUT2-3 array assay A-AFFY-6 P-GEAD-128 LiverUT2-3.txt P-GEAD-129 summary.tar.gz Parp-1+/+ ES10 ES10 Mus musculus 10090 226-47 226-47 Embryonic_stem_cells gene_knock_out Parp-1-/- male SAMD00160872 ES10 replicate_#3 P-GEAD-124 P-GEAD-125 P-GEAD-130 ES10 total RNA P-GEAD-126 ES10 biotin, streptavidin R-phycoerythrin P-GEAD-127 ES10 array assay A-AFFY-6 P-GEAD-128 ES10.txt P-GEAD-129 summary.tar.gz Parp-1-/- LiverUT2-4 LiverUT2-4 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm liver_#2 13_months None Parp-1+/+ female liver SAMD00160873 LiverUT2-4 replicate_#2 P-GEAD-124 P-GEAD-125 P-GEAD-130 LiverUT2-4 total RNA P-GEAD-126 LiverUT2-4 biotin, streptavidin R-phycoerythrin P-GEAD-127 LiverUT2-4 array assay A-AFFY-6 P-GEAD-128 LiverUT2-4.txt P-GEAD-129 summary.tar.gz Parp-1+/+ LiverUT6-3 LiverUT6-3 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm liver_#6 13_months gene_knock_out Parp-1-/- female liver SAMD00160874 LiverUT6-3 replicate_#1 P-GEAD-124 P-GEAD-125 P-GEAD-130 LiverUT6-3 total RNA P-GEAD-126 LiverUT6-3 biotin, streptavidin R-phycoerythrin P-GEAD-127 LiverUT6-3 array assay A-AFFY-6 P-GEAD-128 LiverUT6-3.txt P-GEAD-129 summary.tar.gz Parp-1-/- LiverUT6-4 LiverUT6-4 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm liver_#6 13_months gene_knock_out Parp-1-/- female liver SAMD00160875 LiverUT6-4 replicate_#2 P-GEAD-124 P-GEAD-125 P-GEAD-130 LiverUT6-4 total RNA P-GEAD-126 LiverUT6-4 biotin, streptavidin R-phycoerythrin P-GEAD-127 LiverUT6-4 array assay A-AFFY-6 P-GEAD-128 LiverUT6-4.txt P-GEAD-129 summary.tar.gz Parp-1-/- LiverUT7-3 LiverUT7-3 Mus musculus 10090 ICR;129S4-Adprt1tm1Hsmm/Hsmm liver_#7 13_months gene_knock_out Parp-1-/- female liver SAMD00160876 LiverUT7-3 replicate_#1 P-GEAD-124 P-GEAD-125 P-GEAD-130 LiverUT7-3 total RNA P-GEAD-126 LiverUT7-3 biotin, streptavidin R-phycoerythrin P-GEAD-127 LiverUT7-3 array assay A-AFFY-6 P-GEAD-128 LiverUT7-3.txt P-GEAD-129 summary.tar.gz Parp-1-/-