Comment[GEAAccession]	E-GEAD-307
MAGE-TAB Version	1.1
Investigation Title	A multi-modal data resource for investigating geographic heterogeneity in patient-derived xenograft tumors
Experiment Description	This experiment shows transcriptional data of 36 colorectal PDX samples across different tumor models and spatial scales. The goal is to show PDX heterogeneity in genomic, transcriptomic, proteomic and imaging assay modalities.
Experimental Design	cell type comparison design	clinical history design	disease state design	genetic modification design	genotype design	strain or line design	genotyping design	array specific design
Experimental Factor Name	isolate
Experimental Factor Type	isolate
Person Last Name	Roth
Person First Name	Maike
Person Affiliation	Altschuler and Wu lab, Pharmaceutical Chemistry, University of California, San Francisco
Person Roles	submitter
Public Release Date	2019-03-12
Protocol Name	P-GEAD-161	P-GEAD-162	P-GEAD-163	P-GEAD-164	P-GEAD-165
Protocol Type	sample collection protocol	nucleic acid extraction protocol	nucleic acid library construction protocol	nucleic acid sequencing protocol	normalization data transformation protocol
Protocol Description	PDX extraction	Arcturus PicoPure RNA Isolation Kit	Ion Ampliseq Transcriptome Kit	Ion Proton TM sequencer	Torrent Suite
SDRF File	E-GEAD-307.sdrf.txt
Comment[AEExperimentType]	RNA-seq of coding RNA
Comment[BioProject]	PRJDB7951
Comment[Last Update Date]	2019-08-13