Source Name	Characteristics[sample_name]	Characteristics[organism]	Characteristics[taxonomy_id]	Characteristics[isolate]	Characteristics[biomaterial_provider]	Characteristics[collection_date]	Characteristics[env_biome]	Characteristics[env_feature]	Characteristics[env_material]	Characteristics[geo_loc_name]	Characteristics[lat_lon]	Characteristics[project_name]	Characteristics[isol_growth_condt]	Characteristics[num_replicons]	Characteristics[estimated_size]	Characteristics[ploidy]	Characteristics[propagation]	Characteristics[host]	Comment[BioSample]	Comment[sample_title]	Comment[description]	Protocol REF	Protocol REF	Protocol REF	Extract Name	Material Type	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SELECTION]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[INSTRUMENT_MODEL]	Protocol REF	Assay Name	Comment[SRA_EXPERIMENT]	Comment[SRA_RUN]	Technology Type	Array Data File	Protocol REF	Derived Array Data File	Factor Value[isolate]
CaSIX_Sample1	CaSIX_Sample1	Homo sapiens	9606	CN1574_central_1	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161118	CaSIX_Sample1_CN1574_central_1	Sample of PDX-R2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample1	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample1	DRX160166	DRR169552	sequencing assay	DRR169552	P-GEAD-165	IonXpress_001_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1574_central_1
CaSIX_Sample2	CaSIX_Sample2	Homo sapiens	9606	CN1574_dorsal_2	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161119	CaSIX_Sample2_CN1574_dorsal_2	Sample of PDX-R2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample2	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample2	DRX160167	DRR169553	sequencing assay	DRR169553	P-GEAD-165	IonXpress_002_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1574_dorsal_2
CaSIX_Sample3	CaSIX_Sample3	Homo sapiens	9606	CN1571_central_1	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161120	CaSIX_Sample3_CN1571_central_1	Sample of PDX-L1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample3	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample3	DRX160168	DRR169554	sequencing assay	DRR169554	P-GEAD-165	IonXpress_003_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1571_central_1
CaSIX_Sample4	CaSIX_Sample4	Homo sapiens	9606	CN1572_ventral_1	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161121	CaSIX_Sample4_CN1572_ventral_1	Sample of PDX-R1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample4	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample4	DRX160169	DRR169555	sequencing assay	DRR169555	P-GEAD-165	IonXpress_004_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1572_ventral_1
CaSIX_Sample5	CaSIX_Sample5	Homo sapiens	9606	CN1574_dorsal_1	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161122	CaSIX_Sample5_CN1574_dorsal_1	Sample of PDX-R2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample5	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample5	DRX160170	DRR169556	sequencing assay	DRR169556	P-GEAD-165	IonXpress_005_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1574_dorsal_1
CaSIX_Sample6	CaSIX_Sample6	Homo sapiens	9606	CN1572_ventral_2	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161123	CaSIX_Sample6_CN1572_ventral_2	Sample of PDX-R1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample6	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample6	DRX160171	DRR169557	sequencing assay	DRR169557	P-GEAD-165	IonXpress_006_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1572_ventral_2
CaSIX_Sample7	CaSIX_Sample7	Homo sapiens	9606	CN1574_ventral_2	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161124	CaSIX_Sample7_CN1574_ventral_2	Sample of PDX-R2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample7	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample7	DRX160172	DRR169558	sequencing assay	DRR169558	P-GEAD-165	IonXpress_007_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1574_ventral_2
CaSIX_Sample8	CaSIX_Sample8	Homo sapiens	9606	CN1574_central_3	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161125	CaSIX_Sample8_CN1574_central_3	Sample of PDX-R2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample8	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample8	DRX160173	DRR169559	sequencing assay	DRR169559	P-GEAD-165	IonXpress_008_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1574_central_3
CaSIX_Sample9	CaSIX_Sample9	Homo sapiens	9606	CN1571_ventral_3	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161126	CaSIX_Sample9_CN1571_ventral_3	Sample of PDX-L1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample9	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample9	DRX160174	DRR169560	sequencing assay	DRR169560	P-GEAD-165	IonXpress_009_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1571_ventral_3
CaSIX_Sample10	CaSIX_Sample10	Homo sapiens	9606	CN1572_dorsal_2	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161127	CaSIX_Sample10_CN1572_dorsal_2	Sample of PDX-R1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample10	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample10	DRX160175	DRR169561	sequencing assay	DRR169561	P-GEAD-165	IonXpress_010_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1572_dorsal_2
CaSIX_Sample11	CaSIX_Sample11	Homo sapiens	9606	CN1571_ventral_1	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161128	CaSIX_Sample11_CN1571_ventral_1	Sample of PDX-L1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample11	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample11	DRX160176	DRR169562	sequencing assay	DRR169562	P-GEAD-165	IonXpress_011_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1571_ventral_1
CaSIX_Sample12	CaSIX_Sample12	Homo sapiens	9606	CN1572_central_3	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161129	CaSIX_Sample12_CN1572_central_3	Sample of PDX-R1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample12	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample12	DRX160177	DRR169563	sequencing assay	DRR169563	P-GEAD-165	IonXpress_012_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1572_central_3
CaSIX_Sample13	CaSIX_Sample13	Homo sapiens	9606	CN1571_ventral_2	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161130	CaSIX_Sample13_CN1571_ventral_2	Sample of PDX-L1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample13	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample13	DRX160178	DRR169564	sequencing assay	DRR169564	P-GEAD-165	IonXpress_013_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1571_ventral_2
CaSIX_Sample14	CaSIX_Sample14	Homo sapiens	9606	CR-0104-O_ventral_1	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161131	CaSIX_Sample14_CR-0104-O_ventral_1	Sample of PDX-L2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample14	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample14	DRX160179	DRR169565	sequencing assay	DRR169565	P-GEAD-165	IonXpress_014_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CR-0104-O_ventral_1
CaSIX_Sample15	CaSIX_Sample15	Homo sapiens	9606	CN1574_central_2	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161132	CaSIX_Sample15_CN1574_central_2	Sample of PDX-R2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample15	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample15	DRX160180	DRR169566	sequencing assay	DRR169566	P-GEAD-165	IonXpress_015_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1574_central_2
CaSIX_Sample16	CaSIX_Sample16	Homo sapiens	9606	CN1571_central_3	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161133	CaSIX_Sample16_CN1571_central_3	Sample of PDX-L1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample16	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample16	DRX160181	DRR169567	sequencing assay	DRR169567	P-GEAD-165	IonXpress_016_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1571_central_3
CaSIX_Sample17	CaSIX_Sample17	Homo sapiens	9606	CN1574_dorsal_3	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161134	CaSIX_Sample17_CN1574_dorsal_3	Sample of PDX-R2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample17	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample17	DRX160182	DRR169568	sequencing assay	DRR169568	P-GEAD-165	IonXpress_017_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1574_dorsal_3
CaSIX_Sample18	CaSIX_Sample18	Homo sapiens	9606	CN1571_dorsal_2	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161135	CaSIX_Sample18_CN1571_dorsal_2	Sample of PDX-L1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample18	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample18	DRX160183	DRR169569	sequencing assay	DRR169569	P-GEAD-165	IonXpress_018_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1571_dorsal_2
CaSIX_Sample19	CaSIX_Sample19	Homo sapiens	9606	CN1572_ventral_3	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161136	CaSIX_Sample19_CN1572_ventral_3	Sample of PDX-R1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample19	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample19	DRX160184	DRR169570	sequencing assay	DRR169570	P-GEAD-165	IonXpress_019_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1572_ventral_3
CaSIX_Sample20	CaSIX_Sample20	Homo sapiens	9606	CR-0104-O_ventral_3	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161137	CaSIX_Sample20_CR-0104-O_ventral_3	Sample of PDX-L2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample20	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample20	DRX160185	DRR169571	sequencing assay	DRR169571	P-GEAD-165	IonXpress_020_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CR-0104-O_ventral_3
CaSIX_Sample21	CaSIX_Sample21	Homo sapiens	9606	CN1572_dorsal_3	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161138	CaSIX_Sample21_CN1572_dorsal_3	Sample of PDX-R1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample21	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample21	DRX160186	DRR169572	sequencing assay	DRR169572	P-GEAD-165	IonXpress_021_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1572_dorsal_3
CaSIX_Sample22	CaSIX_Sample22	Homo sapiens	9606	CN1571_dorsal_3	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161139	CaSIX_Sample22_CN1571_dorsal_3	Sample of PDX-L1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample22	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample22	DRX160187	DRR169573	sequencing assay	DRR169573	P-GEAD-165	IonXpress_022_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1571_dorsal_3
CaSIX_Sample23	CaSIX_Sample23	Homo sapiens	9606	CR-0104-O_central_1	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161140	CaSIX_Sample23_CR-0104-O_central_1	Sample of PDX-L2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample23	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample23	DRX160188	DRR169574	sequencing assay	DRR169574	P-GEAD-165	IonXpress_023_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CR-0104-O_central_1
CaSIX_Sample24	CaSIX_Sample24	Homo sapiens	9606	CN1572_central_1	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161141	CaSIX_Sample24_CN1572_central_1	Sample of PDX-R1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample24	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample24	DRX160189	DRR169575	sequencing assay	DRR169575	P-GEAD-165	IonXpress_024_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1572_central_1
CaSIX_Sample25	CaSIX_Sample25	Homo sapiens	9606	CR-0104-O_dorsal_1	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161142	CaSIX_Sample25_CR-0104-O_dorsal_1	Sample of PDX-L2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample25	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample25	DRX160190	DRR169576	sequencing assay	DRR169576	P-GEAD-165	IonXpress_025_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CR-0104-O_dorsal_1
CaSIX_Sample26	CaSIX_Sample26	Homo sapiens	9606	CR-0104-O_dorsal_3	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161143	CaSIX_Sample26_CR-0104-O_dorsal_3	Sample of PDX-L2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample26	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample26	DRX160191	DRR169577	sequencing assay	DRR169577	P-GEAD-165	IonXpress_026_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CR-0104-O_dorsal_3
CaSIX_Sample27	CaSIX_Sample27	Homo sapiens	9606	CR-0104-O_central_2	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161144	CaSIX_Sample27_CR-0104-O_central_2	Sample of PDX-L2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample27	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample27	DRX160192	DRR169578	sequencing assay	DRR169578	P-GEAD-165	IonXpress_027_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CR-0104-O_central_2
CaSIX_Sample28	CaSIX_Sample28	Homo sapiens	9606	CN1571_central_2	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161145	CaSIX_Sample28_CN1571_central_2	Sample of PDX-L1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample28	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample28	DRX160193	DRR169579	sequencing assay	DRR169579	P-GEAD-165	IonXpress_028_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1571_central_2
CaSIX_Sample29	CaSIX_Sample29	Homo sapiens	9606	CN1574_ventral_3	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161146	CaSIX_Sample29_CN1574_ventral_3	Sample of PDX-R2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample29	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample29	DRX160194	DRR169580	sequencing assay	DRR169580	P-GEAD-165	IonXpress_029_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1574_ventral_3
CaSIX_Sample30	CaSIX_Sample30	Homo sapiens	9606	CN1572_central_2	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161147	CaSIX_Sample30_CN1572_central_2	Sample of PDX-R1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample30	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample30	DRX160195	DRR169581	sequencing assay	DRR169581	P-GEAD-165	IonXpress_030_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1572_central_2
CaSIX_Sample31	CaSIX_Sample31	Homo sapiens	9606	CN1572_dorsal_1	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161148	CaSIX_Sample31_CN1572_dorsal_1	Sample of PDX-R1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample31	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample31	DRX160196	DRR169582	sequencing assay	DRR169582	P-GEAD-165	IonXpress_031_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1572_dorsal_1
CaSIX_Sample32	CaSIX_Sample32	Homo sapiens	9606	CR-0104-O_ventral_2	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161149	CaSIX_Sample32_CR-0104-O_ventral_2	Sample of PDX-L2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample32	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample32	DRX160197	DRR169583	sequencing assay	DRR169583	P-GEAD-165	IonXpress_032_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CR-0104-O_ventral_2
CaSIX_Sample33	CaSIX_Sample33	Homo sapiens	9606	CR-0104-O_dorsal_2	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161150	CaSIX_Sample33_CR-0104-O_dorsal_2	Sample of PDX-L2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample33	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample33	DRX160198	DRR169584	sequencing assay	DRR169584	P-GEAD-165	IonXpress_033_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CR-0104-O_dorsal_2
CaSIX_Sample34	CaSIX_Sample34	Homo sapiens	9606	CN1574_ventral_1	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161151	CaSIX_Sample34_CN1574_ventral_1	Sample of PDX-R2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample34	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample34	DRX160199	DRR169585	sequencing assay	DRR169585	P-GEAD-165	IonXpress_034_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1574_ventral_1
CaSIX_Sample35	CaSIX_Sample35	Homo sapiens	9606	CR-0104-O_central_3	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161152	CaSIX_Sample35_CR-0104-O_central_3	Sample of PDX-L2	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample35	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample35	DRX160200	DRR169586	sequencing assay	DRR169586	P-GEAD-165	IonXpress_035_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CR-0104-O_central_3
CaSIX_Sample36	CaSIX_Sample36	Homo sapiens	9606	CN1571_dorsal_1	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161153	CaSIX_Sample36_CN 1571_dorsal_1	Sample of PDX-L1	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample36	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample36	DRX160201	DRR169587	sequencing assay	DRR169587	P-GEAD-165	IonXpress_036_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1571_dorsal_1
CaSIX_Sample8_plusMouse	CaSIX_Sample8_plusMouse	Homo sapiens	9606	CN1574_central_3_plusMouse	UCSF	2017	not applicable	not applicable	not applicable	not applicable	not applicable	CaSIX	not applicable	not applicable	not applicable	not applicable	not applicable	not applicable	SAMD00161154	CaSIX_Sample8_CN1574_central_3_plusMouse	Sample of PDX-R2-plusmouse	P-GEAD-161	P-GEAD-162	P-GEAD-163	CaSIX_Sample8_plusMouse	total RNA	SINGLE	PCR	TRANSCRIPTOMIC	RNA_SEQ	Ion Torrent S5	P-GEAD-164	CaSIX_Sample8_plusMouse	DRX160202	DRR169588	sequencing assay	DRR169588	P-GEAD-165	IonXpress_037_CombineAlignments_CA_4_chips_combined_06-01-17_UCSF-LCM_001.amplicon.cov.txt	CN1574_central_3_plusMouse