Source Name	Characteristics[sample_name]	Characteristics[organism]	Characteristics[taxonomy_id]	Characteristics[biological_replicate]	Characteristics[technical_replicate]	Characteristics[dev_stage]	Characteristics[disease]	Characteristics[tissue]	Characteristics[treatment]	Comment[BioSample]	Comment[sample_title]	Comment[description]	Protocol REF	Protocol REF	Protocol REF	Protocol REF	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Protocol REF	Assay Name	Technology Type	Array Design REF	Protocol REF	Array Data File	Protocol REF	Derived Array Data Matrix File	Factor Value[treatment]
Uninfected root sample biological replicate 1	Uninfected root sample biological replicate 1	Arabidopsis thaliana	3702	1		Growth stage 1.08-1.10 (Boyes et al., 2001, Plant Cell 13, 1499-1510)	Normal	Roots		SAMD00185775	Uninfected root sample biological replicate 1	Several 100 sections of uninfected roots from different control plants were pooled over a period of approximately 12 months.	P-GEAD-210	P-GEAD-211	P-GEAD-216	P-GEAD-217	Uninfected root sample biological replicate 1	total RNA	P-GEAD-212	Uninfected root sample biological replicate 1	Cy3	P-GEAD-213	Uninfected root sample biological replicate 1	array assay	A-GEOD-10055	P-GEAD-214	Array1.txt	P-GEAD-215	Summarized_data.txt	uninfected
Gall samples biological replicate 1	Gall samples biological replicate 1	Arabidopsis thaliana	3702	1		Growth stage 1.08-1.10 (Boyes et al., 2001, Plant Cell 13, 1499-1510)	Parasitised by M. incognita	Roots	sterile M. incognita juveniles suspended in 35 microl sterile tap water at 3 points per root system	SAMD00185776	Gall samples biological replicate 1	Several 100 galls from different plants were pooled over a period of approximately 12 months.	P-GEAD-210	P-GEAD-211	P-GEAD-216	P-GEAD-217	Gall samples biological replicate 1	total RNA	P-GEAD-212	Gall samples biological replicate 1	Cy5	P-GEAD-213	Gall samples biological replicate 1	array assay	A-GEOD-10055	P-GEAD-214	Array1.txt	P-GEAD-215	Summarized_data.txt	parasitised by M. incognita
Uninfected root sample biological replicate 2	Uninfected root sample biological replicate 2	Arabidopsis thaliana	3702	2		Growth stage 1.08-1.10 (Boyes et al., 2001, Plant Cell 13, 1499-1510)	Normal	Roots		SAMD00185777	Uninfected root sample biological replicate 2	Several 100 sections of uninfected roots from different control plants were pooled over a period of approximately 12 months.	P-GEAD-210	P-GEAD-211	P-GEAD-216	P-GEAD-217	Uninfected root sample biological replicate 2	total RNA	P-GEAD-212	Uninfected root sample biological replicate 2	Cy3	P-GEAD-213	Uninfected root sample biological replicate 2	array assay	A-GEOD-10055	P-GEAD-214	Array2.txt	P-GEAD-215	Summarized_data.txt	uninfected
Gall samples biological replicate 2	Gall samples biological replicate 2	Arabidopsis thaliana	3702	2		Growth stage 1.08-1.10 (Boyes et al., 2001, Plant Cell 13, 1499-1510)	Parasitised by M. incognita	Roots	sterile M. incognita juveniles suspended in 35 microl sterile tap water at 3 points per root system	SAMD00185778	Gall samples biological replicate 2	Several 100 galls from different plants were pooled over a period of approximately 12 months.	P-GEAD-210	P-GEAD-211	P-GEAD-216	P-GEAD-217	Gall samples biological replicate 2	total RNA	P-GEAD-212	Gall samples biological replicate 2	Cy5	P-GEAD-213	Gall samples biological replicate 2	array assay	A-GEOD-10055	P-GEAD-214	Array2.txt	P-GEAD-215	Summarized_data.txt	parasitised by M. incognita
Uninfected root sample technical replicate 1	Uninfected root sample technical replicate 1	Arabidopsis thaliana	3702		1	Growth stage 1.08-1.10 (Boyes et al., 2001, Plant Cell 13, 1499-1510)	Normal	Roots		SAMD00185779	Uninfected root sample technical replicate 1	Several 100 sections of uninfected roots from different control plants were pooled over a period of approximately 12 months.	P-GEAD-210	P-GEAD-211	P-GEAD-216	P-GEAD-217	Uninfected root sample technical replicate 1	total RNA	P-GEAD-212	Uninfected root sample technical replicate 1	Cy3	P-GEAD-213	Uninfected root sample technical replicate 1	array assay	A-GEOD-10055	P-GEAD-214	Array3.txt	P-GEAD-215	Summarized_data.txt	uninfected
Gall samples technical replicate 1	Gall samples technical replicate 1	Arabidopsis thaliana	3702		1	Growth stage 1.08-1.10 (Boyes et al., 2001, Plant Cell 13, 1499-1510)	Parasitised by M. incognita	Roots	sterile M. incognita juveniles suspended in 35 microl sterile tap water at 3 points per root system	SAMD00185780	Gall samples technical replicate 1	Several 100 galls from different plants were pooled over a period of approximately 12 months.	P-GEAD-210	P-GEAD-211	P-GEAD-216	P-GEAD-217	Gall samples technical replicate 1	total RNA	P-GEAD-212	Gall samples technical replicate 1	Cy5	P-GEAD-213	Gall samples technical replicate 1	array assay	A-GEOD-10055	P-GEAD-214	Array3.txt	P-GEAD-215	Summarized_data.txt	parasitised by M. incognita
Uninfected root sample technical replicate 2	Uninfected root sample technical replicate 2	Arabidopsis thaliana	3702		2	Growth stage 1.08-1.10 (Boyes et al., 2001, Plant Cell 13, 1499-1510)	Normal	Roots		SAMD00185781	Uninfected root sample technical replicate 2	Several 100 sections of uninfected roots from different control plants were pooled over a period of approximately 12 months.	P-GEAD-210	P-GEAD-211	P-GEAD-216	P-GEAD-217	Uninfected root sample technical replicate 2	total RNA	P-GEAD-212	Uninfected root sample technical replicate 2	Cy3	P-GEAD-213	Uninfected root sample technical replicate 2	array assay	A-GEOD-10055	P-GEAD-214	Array4.txt	P-GEAD-215	Summarized_data.txt	uninfected
Gall samples technical replicate 2	Gall samples technical replicate 2	Arabidopsis thaliana	3702		2	Growth stage 1.08-1.10 (Boyes et al., 2001, Plant Cell 13, 1499-1510)	Parasitised by M. incognita	Roots	sterile M. incognita juveniles suspended in 35 microl sterile tap water at 3 points per root system	SAMD00185782	Gall samples technical replicate 2	Several 100 galls from different plants were pooled over a period of approximately 12 months.	P-GEAD-210	P-GEAD-211	P-GEAD-216	P-GEAD-217	Gall samples technical replicate 2	total RNA	P-GEAD-212	Gall samples technical replicate 2	Cy5	P-GEAD-213	Gall samples technical replicate 2	array assay	A-GEOD-10055	P-GEAD-214	Array4.txt	P-GEAD-215	Summarized_data.txt	parasitised by M. incognita