Source Name Characteristics[sample_name] Characteristics[organism] Characteristics[taxonomy_id] Characteristics[biological_replicate] Characteristics[genotype] Comment[BioSample] Comment[sample_title] Protocol REF Protocol REF Protocol REF Extract Name Material Type Comment[LIBRARY_LAYOUT] Comment[LIBRARY_LAYOUT] Comment[LIBRARY_SELECTION] Comment[LIBRARY_SELECTION] Comment[LIBRARY_SOURCE] Comment[LIBRARY_SOURCE] Comment[LIBRARY_STRATEGY] Comment[LIBRARY_STRATEGY] Comment[INSTRUMENT_MODEL] Comment[INSTRUMENT_MODEL] Protocol REF Assay Name Comment[SRA_EXPERIMENT] Comment[SRA_RUN] Technology Type Array Data File Protocol REF Derived Array Data File Factor Value[genotype] WT Col-0 rep1 WT Col-0 rep1 Arabidopsis thaliana 3702 rep1 for H3K4me WT SAMD00233900 WT Col-0 rep1 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 rep1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT H3 DRX225463 DRR235273 sequencing assay DRR235273 P-GEAD-796 Col_H3_1_coverage.bed WT WT Col-0 rep1 WT Col-0 rep1 Arabidopsis thaliana 3702 rep1 for H3K4me WT SAMD00233900 WT Col-0 rep1 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 rep1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT H3K4me1 DRX225464 DRR235274 sequencing assay DRR235274 P-GEAD-796 Col_K4me1_1_coverage.bed WT WT Col-0 rep1 WT Col-0 rep1 Arabidopsis thaliana 3702 rep1 for H3K4me WT SAMD00233900 WT Col-0 rep1 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 rep1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT H3K4me2 DRX225465 DRR235275 sequencing assay DRR235275 P-GEAD-796 Col_K4me2_1_coverage.bed WT fld rep1 fld rep1 Arabidopsis thaliana 3702 rep1 for H3K4me fld-4 SAMD00233901 fld-4 rep1 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld rep1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld H3 rep.1 DRX225466 DRR235276 sequencing assay DRR235276 P-GEAD-796 fld_H3_1_coverage.bed fld-4 fld rep1 fld rep1 Arabidopsis thaliana 3702 rep1 for H3K4me fld-4 SAMD00233901 fld-4 rep1 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld rep1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld H3K4me1 rep.1 DRX225467 DRR235277 sequencing assay DRR235277 P-GEAD-796 fld_K4me1_1_coverage.bed fld-4 fld rep1 fld rep1 Arabidopsis thaliana 3702 rep1 for H3K4me fld-4 SAMD00233901 fld-4 rep1 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld rep1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld H3K4me2 rep.1 DRX225468 DRR235278 sequencing assay DRR235278 P-GEAD-796 fld_K4me2_1_coverage.bed fld-4 fld rep2 fld rep2 Arabidopsis thaliana 3702 rep2 for H3K4me fld-4 SAMD00233902 fld-4 rep2 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld rep2 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld H3 rep.2 DRX225469 DRR235279 sequencing assay DRR235279 P-GEAD-796 fld_H3_2_coverage.bed fld-4 fld rep2 fld rep2 Arabidopsis thaliana 3702 rep2 for H3K4me fld-4 SAMD00233902 fld-4 rep2 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld rep2 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld H3K4me1 rep.2 DRX225470 DRR235280 sequencing assay DRR235280 P-GEAD-796 fld_K4me1_2_coverage.bed fld-4 fld rep2 fld rep2 Arabidopsis thaliana 3702 rep2 for H3K4me fld-4 SAMD00233902 fld-4 rep2 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld rep2 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld H3K4me2 rep.2 DRX225471 DRR235281 sequencing assay DRR235281 P-GEAD-796 fld_K4me2_2_coverage.bed fld-4 @@10@@WT Col-0 A WT Col-0 A Arabidopsis thaliana 3702 repA for H3K4me WT SAMD00233903 WT Col-0 A P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 A genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT H3 A DRX225472 DRR235282 sequencing assay DRR235282 P-GEAD-796 H3_WT_1st_coverage.bed WT @@11@@WT Col-0 A WT Col-0 A Arabidopsis thaliana 3702 repA for H3K4me WT SAMD00233903 WT Col-0 A P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 A genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT H3K4me1 A 1 DRX225473 DRR235283 sequencing assay DRR235283 P-GEAD-796 WT_K4me1_1st_coverage.bed WT @@12@@WT Col-0 A WT Col-0 A Arabidopsis thaliana 3702 repA for H3K4me WT SAMD00233903 WT Col-0 A P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 A genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT H3K4me1 A 2 DRX225473 DRR235284 sequencing assay DRR235284 P-GEAD-796 WT_K4me1_1st_coverage.bed WT @@13@@fld A fld A Arabidopsis thaliana 3702 repA for H3K4me fld-4 SAMD00233904 fld-4 A P-GEAD-792 P-GEAD-793 P-GEAD-794 fld A genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld H3 A DRX225474 DRR235285 sequencing assay DRR235285 P-GEAD-796 H3_fld_1st_coverage.bed fld-4 @@14@@fld A fld A Arabidopsis thaliana 3702 repA for H3K4me fld-4 SAMD00233904 fld-4 A P-GEAD-792 P-GEAD-793 P-GEAD-794 fld A genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld H3K4me1 A 1 DRX225475 DRR235286 sequencing assay DRR235286 P-GEAD-796 fld_K4me1_1st_coverage.bed fld-4 @@15@@fld A fld A Arabidopsis thaliana 3702 repA for H3K4me fld-4 SAMD00233904 fld-4 A P-GEAD-792 P-GEAD-793 P-GEAD-794 fld A genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld H3K4me1 A 2 DRX225475 DRR235287 sequencing assay DRR235287 P-GEAD-796 fld_K4me1_1st_coverage.bed fld-4 @@16@@ld A ld A Arabidopsis thaliana 3702 repA for H3K4me ld-1 SAMD00233906 ld-1 A P-GEAD-792 P-GEAD-793 P-GEAD-794 ld A genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 ld H3 A DRX225478 DRR235291 sequencing assay DRR235291 P-GEAD-796 H3_ld_1st_coverage.bed ld-1 @@17@@ld A ld A Arabidopsis thaliana 3702 repA for H3K4me ld-1 SAMD00233906 ld-1 A P-GEAD-792 P-GEAD-793 P-GEAD-794 ld A genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 ld H3K4me1 A 1 DRX225479 DRR235292 sequencing assay DRR235292 P-GEAD-796 ld_K4me1_1st_coverage.bed ld-1 @@18@@ld A ld A Arabidopsis thaliana 3702 repA for H3K4me ld-1 SAMD00233906 ld-1 A P-GEAD-792 P-GEAD-793 P-GEAD-794 ld A genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 ld H3K4me1 A 2 DRX225479 DRR235293 sequencing assay DRR235293 P-GEAD-796 ld_K4me1_1st_coverage.bed ld-1 @@19@@WT Col-0 B WT Col-0 B Arabidopsis thaliana 3702 repB for H3K4me WT SAMD00233907 WT Col-0 B P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 B genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT H3 B DRX225480 DRR235294 sequencing assay DRR235294 P-GEAD-796 H3_WT_2nd_coverage.bed WT @@20@@WT Col-0 B WT Col-0 B Arabidopsis thaliana 3702 repB for H3K4me WT SAMD00233907 WT Col-0 B P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 B genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT H3K4me1 B DRX225481 DRR235295 sequencing assay DRR235295 P-GEAD-796 WT_K4me1_2nd_coverage.bed WT @@21@@fld B fld B Arabidopsis thaliana 3702 repB for H3K4me fld-4 SAMD00233908 fld-4 B P-GEAD-792 P-GEAD-793 P-GEAD-794 fld B genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld H3 B DRX225482 DRR235296 sequencing assay DRR235296 P-GEAD-796 H3_fld_2nd_coverage.bed fld-4 @@22@@fld B fld B Arabidopsis thaliana 3702 repB for H3K4me fld-4 SAMD00233908 fld-4 B P-GEAD-792 P-GEAD-793 P-GEAD-794 fld B genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld H3K4me1 B DRX225483 DRR235297 sequencing assay DRR235297 P-GEAD-796 fld_K4me1_2nd_coverage.bed fld-4 @@23@@ld B ld B Arabidopsis thaliana 3702 repB for H3K4me ld-1 SAMD00233910 ld-1 B P-GEAD-792 P-GEAD-793 P-GEAD-794 ld B genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 ld H3 B DRX225486 DRR235300 sequencing assay DRR235300 P-GEAD-796 H3_ld_2nd_coverage.bed ld-1 @@24@@ld B ld B Arabidopsis thaliana 3702 repB for H3K4me ld-1 SAMD00233910 ld-1 B P-GEAD-792 P-GEAD-793 P-GEAD-794 ld B genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 ld H3K4me1 B DRX225487 DRR235301 sequencing assay DRR235301 P-GEAD-796 ld_K4me1_2nd_coverage.bed ld-1 @@25@@At1g77122_WT 1 At1g77122_WT 1 Arabidopsis thaliana 3702 rep1 for H3K4me_RNA WT SAMD00233919 At1g77122_WT 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 At1g77122_WT 1 genomic DNA SINGLE PAIRED ChIP PolyA GENOMIC TRANSCRIPTOMIC CH_IP_SEQ RNA_SEQ Illumina HiSeq 4000 HiSeq X Ten P-GEAD-795 At1g77122_WT 1 DRX260040 DRR270454 sequencing assay DRR270454 P-GEAD-796 H3_At1g77122WT_1st_genomecov_chr1.txt WT @@26@@At1g77122_T-DNA2 1 At1g77122_T-DNA2 1 Arabidopsis thaliana 3702 rep1 for H3K4me_RNA At1g77122_T-DNA2 SAMD00233921 At1g77122_T-DNA2 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 At1g77122_T-DNA2 1 genomic DNA SINGLE PAIRED ChIP PolyA GENOMIC TRANSCRIPTOMIC CH_IP_SEQ RNA_SEQ Illumina HiSeq 4000 HiSeq X Ten P-GEAD-795 At1g77122_2 H3K4me1 DRX225506 DRR235320 sequencing assay DRR235320 P-GEAD-796 K4me1_At1g77122_1st_genomecov_chr1.txt At1g77122_T-DNA2 @@27@@WT Col-0 1 WT Col-0 1 Arabidopsis thaliana 3702 rep1 for H3K4me_RNAPII WT SAMD00233911 WT Col-0 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT RNAPII rep.1 DRX225507 DRR235321 sequencing assay DRR235321 P-GEAD-796 WT1_CMA601_TTS500_coverage.bed WT @@28@@fld 1 fld 1 Arabidopsis thaliana 3702 rep1 for H3K4me_RNAPII fld-4 SAMD00233912 fld-4 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld 1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld RNAPII rep.1 DRX225508 DRR235322 sequencing assay DRR235322 P-GEAD-796 fld1_CMA601_TTS500_coverage.bed fld-4 @@29@@top1a 1 top1a 1 Arabidopsis thaliana 3702 rep1 for H3K4me_RNAPII top1a-1 SAMD00233913 top1a-1 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 top1a 1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 top1a RNAPII rep.1 DRX225509 DRR235323 sequencing assay DRR235323 P-GEAD-796 top1a1_CMA601_TTS500_coverage.bed top1a-1 @@30@@fld top1a 1 fld top1a 1 Arabidopsis thaliana 3702 rep1 for H3K4me_RNAPII fld-4 top1a-1 SAMD00233914 fld-4 top1a-1 double 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld top1a 1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld top1a RNAPII rep.1 DRX225510 DRR235324 sequencing assay DRR235324 P-GEAD-796 fld_top1a1_CMA601_TTS500_coverage.bed fld-4 top1a-1 @@31@@WT Col-0 2 WT Col-0 2 Arabidopsis thaliana 3702 rep2 for H3K4me_RNAPII WT SAMD00233915 WT Col-0 2 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 2 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT RNAPII rep.2 DRX225511 DRR235325 sequencing assay DRR235325 P-GEAD-796 WT2_CMA601_TTS500_coverage.bed WT @@32@@fld 2 fld 2 Arabidopsis thaliana 3702 rep2 for H3K4me_RNAPII fld-4 SAMD00233916 fld-4 2 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld 2 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld RNAPII rep.2 DRX225512 DRR235326 sequencing assay DRR235326 P-GEAD-796 fld2_CMA601_TTS500_coverage.bed fld-4 @@33@@top1a 2 top1a 2 Arabidopsis thaliana 3702 rep2 for H3K4me_RNAPII top1a-1 SAMD00233917 top1a-1 2 P-GEAD-792 P-GEAD-793 P-GEAD-794 top1a 2 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 top1a RNAPII rep.2 DRX225513 DRR235327 sequencing assay DRR235327 P-GEAD-796 top1a2_Dia_TTS500_coverage.bed top1a-1 @@34@@fld top1a 2 fld top1a 2 Arabidopsis thaliana 3702 rep2 for H3K4me_RNAPII fld-4 top1a-1 SAMD00233918 fld-4 top1a-1 double 2 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld top1a 2 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 fld top1a RNAPII rep.2 DRX225514 DRR235328 sequencing assay DRR235328 P-GEAD-796 fld_top1a2_Dia_TTS500_coverage.bed fld-4 top1a-1 @@35@@WT Col-0 1 WT Col-0 1 Arabidopsis thaliana 3702 rep1 for H3K4me_RNAPII WT SAMD00233911 WT Col-0 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT RNAPII Ser2P rep.1 DRX225515 DRR235329 sequencing assay DRR235329 P-GEAD-796 WT_Ser2P_1.tdf WT @@36@@WT Col-0 1 WT Col-0 1 Arabidopsis thaliana 3702 rep1 for H3K4me_RNAPII WT SAMD00233911 WT Col-0 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT RNAPII Ser5P rep.1 DRX225516 DRR235330 sequencing assay DRR235330 P-GEAD-796 WT_Ser5P_1.tdf WT @@37@@WT Col-0 2 WT Col-0 2 Arabidopsis thaliana 3702 rep2 for H3K4me_RNAPII WT SAMD00233915 WT Col-0 2 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 2 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT RNAPII Ser2P rep.2 DRX225517 DRR235331 sequencing assay DRR235331 P-GEAD-796 WT_Ser2P_2.tdf WT @@38@@WT Col-0 2 WT Col-0 2 Arabidopsis thaliana 3702 rep2 for H3K4me_RNAPII WT SAMD00233915 WT Col-0 2 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT Col-0 2 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 WT RNAPII Ser5P rep.2 DRX225518 DRR235332 sequencing assay DRR235332 P-GEAD-796 WT_Ser5P_2.tdf WT @@39@@FLAG-FLD negative 1 FLAG-FLD negative 1 Arabidopsis thaliana 3702 rep1 for FLAG-FLD WT SAMD00233922 WT negative 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 FLAG-FLD negative 1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 FLAG-FLD_negative rep.1 DRX225519 DRR235333 sequencing assay DRR235333 P-GEAD-796 MACS2_FLAG_FLD_1st_peaks.narrowPeak.bed WT @@40@@FLAG-FLD 1 FLAG-FLD 1 Arabidopsis thaliana 3702 rep1 for FLAG-FLD 3xFLAG-FLD fld-4 SAMD00233923 3xFLAG-FLD in fld-4 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 FLAG-FLD 1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 FLAG-FLD rep.1 DRX225520 DRR235334 sequencing assay DRR235334 P-GEAD-796 MACS2_FLAG_FLD_1st_peaks.narrowPeak.bed 3xFLAG-FLD fld-4 @@41@@FLAG-FLD negative 2 FLAG-FLD negative 2 Arabidopsis thaliana 3702 rep2 for FLAG-FLD WT SAMD00233924 WT negative 2 P-GEAD-792 P-GEAD-793 P-GEAD-794 FLAG-FLD negative 2 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 FLAG-FLD_negative rep.2 DRX225521 DRR235335 sequencing assay DRR235335 P-GEAD-796 MACS2_FLAG_FLD_2nd_peaks.narrowPeak.bed WT @@42@@FLAG-FLD 2 FLAG-FLD 2 Arabidopsis thaliana 3702 rep2 for FLAG-FLD 3xFLAG-FLD fld-4 SAMD00233925 3xFLAG-FLD in fld-4 2 P-GEAD-792 P-GEAD-793 P-GEAD-794 FLAG-FLD 2 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 FLAG-FLD rep.2 DRX225522 DRR235336 sequencing assay DRR235336 P-GEAD-796 MACS2_FLAG_FLD_2nd_peaks.narrowPeak.bed 3xFLAG-FLD fld-4 @@43@@FLAG-FLD in fri 1 FLAG-FLD in fri Arabidopsis thaliana 3702 rep3 for FLAG-FLD 3xFLAG-FLD fld-4 fri SAMD00233928 3xFLAG-FLD in fld-4 fri P-GEAD-792 P-GEAD-793 P-GEAD-794 FLAG-FLD in fri 1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 FLAG-FLD in fri 1 DRX225525 DRR235339 sequencing assay DRR235339 P-GEAD-796 FLD_fri_Col_genomecov_FLC.txt 3xFLAG-FLD fld-4 fri @@44@@FLAG-FLD in fri 2 FLAG-FLD in fri Arabidopsis thaliana 3702 rep3 for FLAG-FLD 3xFLAG-FLD fld-4 fri SAMD00233928 3xFLAG-FLD in fld-4 fri P-GEAD-792 P-GEAD-793 P-GEAD-794 FLAG-FLD in fri 2 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 FLAG-FLD in fri 2 DRX225525 DRR235340 sequencing assay DRR235340 P-GEAD-796 FLD_fri_Col_genomecov_FLC.txt 3xFLAG-FLD fld-4 fri @@45@@FLAG-FLD in FRI 1 FLAG-FLD in FRI Arabidopsis thaliana 3702 rep3 for FLAG-FLD 3xFLAG-FLD fld-4 FRI SAMD00233929 3xFLAG-FLD in fld-4 FRI P-GEAD-792 P-GEAD-793 P-GEAD-794 FLAG-FLD in FRI 1 genomic DNA SINGLE ChIP GENOMIC CH_IP_SEQ Illumina HiSeq 4000 P-GEAD-795 FLAG-FLD in FRI 1 DRX225526 DRR235341 sequencing assay DRR235341 P-GEAD-796 FLD_FRI_Sf2_genomecov_FLC.txt 3xFLAG-FLD fld-4 FRI @@46@@WT mRNA rep1 WT mRNA rep1 Arabidopsis thaliana 3702 rep1 for mRNA WT SAMD00233933 WT mRNA rep1 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT mRNA rep1 polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 WT mRNA rep.1 DRX225530 DRR235345 sequencing assay DRR235345 P-GEAD-796 WT_1ReadsPerGene.out.tab WT @@47@@WT mRNA rep2 WT mRNA rep2 Arabidopsis thaliana 3702 rep2 for mRNA WT SAMD00233934 WT mRNA rep2 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT mRNA rep2 polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 WT mRNA rep.2 DRX225531 DRR235346 sequencing assay DRR235346 P-GEAD-796 WT_2ReadsPerGene.out.tab WT @@48@@WT mRNA rep3 WT mRNA rep3 Arabidopsis thaliana 3702 rep3 for mRNA WT SAMD00233935 WT mRNA rep3 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT mRNA rep3 polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 WT mRNA rep.3 DRX225532 DRR235347 sequencing assay DRR235347 P-GEAD-796 WT_3ReadsPerGene.out.tab WT @@49@@fld mRNA rep1 fld mRNA rep1 Arabidopsis thaliana 3702 rep1 for mRNA fld-4 SAMD00233936 fld-4 mRNA rep1 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld mRNA rep1 polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 fld mRNA rep.1 DRX225533 DRR235348 sequencing assay DRR235348 P-GEAD-796 fld_1ReadsPerGene.out.tab fld-4 @@50@@fld mRNA rep2 fld mRNA rep2 Arabidopsis thaliana 3702 rep2 for mRNA fld-4 SAMD00233937 fld-4 mRNA rep2 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld mRNA rep2 polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 fld mRNA rep.2 DRX225534 DRR235349 sequencing assay DRR235349 P-GEAD-796 fld_2ReadsPerGene.out.tab fld-4 @@51@@fld mRNA rep3 fld mRNA rep3 Arabidopsis thaliana 3702 rep3 for mRNA fld-4 SAMD00233938 fld-4 mRNA rep3 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld mRNA rep3 polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 fld mRNA rep.3 DRX225535 DRR235350 sequencing assay DRR235350 P-GEAD-796 fld_3ReadsPerGene.out.tab fld-4 @@52@@Col-0 fri Col-0 fri Arabidopsis thaliana 3702 rep3 for FLAG-FLD Col-0 fri SAMD00233926 Col-0 fri P-GEAD-792 P-GEAD-793 P-GEAD-794 Col-0 fri polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 Col-0 mRNA DRX225536 DRR235351 sequencing assay DRR235351 P-GEAD-796 WT_21CReadsPerGene.out.tab Col-0 fri @@53@@Col-0 FRI Col-0 FRI Arabidopsis thaliana 3702 rep3 for FLAG-FLD Col-0 FRI SAMD00233927 Col-0 FRI P-GEAD-792 P-GEAD-793 P-GEAD-794 Col-0 FRI polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 Col-0 FRI mRNA DRX225537 DRR235352 sequencing assay DRR235352 P-GEAD-796 FRI_21CReadsPerGene.out.tab Col-0 FRI @@54@@WT mRNA A WT mRNA A Arabidopsis thaliana 3702 repA for mRNA WT SAMD00233939 WT mRNA A P-GEAD-792 P-GEAD-793 P-GEAD-794 WT mRNA A polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 WT mRNA A DRX225538 DRR235353 sequencing assay DRR235353 P-GEAD-796 WT_AReadsPerGene.out.tab WT @@55@@WT mRNA B WT mRNA B Arabidopsis thaliana 3702 repB for mRNA WT SAMD00233940 WT mRNA B P-GEAD-792 P-GEAD-793 P-GEAD-794 WT mRNA B polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 WT mRNA B DRX225539 DRR235354 sequencing assay DRR235354 P-GEAD-796 WT_BReadsPerGene.out.tab WT @@56@@WT mRNA C WT mRNA C Arabidopsis thaliana 3702 repC for mRNA WT SAMD00233941 WT mRNA C P-GEAD-792 P-GEAD-793 P-GEAD-794 WT mRNA C polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 WT mRNA C DRX225540 DRR235355 sequencing assay DRR235355 P-GEAD-796 WT_CReadsPerGene.out.tab WT @@57@@fld mRNA A fld mRNA A Arabidopsis thaliana 3702 repA for mRNA fld-4 SAMD00233942 fld-4 mRNA A P-GEAD-792 P-GEAD-793 P-GEAD-794 fld mRNA A polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 fld mRNA A DRX225541 DRR235356 sequencing assay DRR235356 P-GEAD-796 fld_AReadsPerGene.out.tab fld-4 @@58@@fld mRNA B fld mRNA B Arabidopsis thaliana 3702 repB for mRNA fld-4 SAMD00233943 fld-4 mRNA B P-GEAD-792 P-GEAD-793 P-GEAD-794 fld mRNA B polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 fld mRNA B DRX225542 DRR235357 sequencing assay DRR235357 P-GEAD-796 fld_BReadsPerGene.out.tab fld-4 @@59@@fld mRNA C fld mRNA C Arabidopsis thaliana 3702 repC for mRNA fld-4 SAMD00233944 fld-4 mRNA C P-GEAD-792 P-GEAD-793 P-GEAD-794 fld mRNA C polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 fld mRNA C DRX225543 DRR235358 sequencing assay DRR235358 P-GEAD-796 fld_CReadsPerGene.out.tab fld-4 @@60@@ld mRNA A ld mRNA A Arabidopsis thaliana 3702 repA for mRNA ld-1 SAMD00233948 ld-1 mRNA A P-GEAD-792 P-GEAD-793 P-GEAD-794 ld mRNA A polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 ld mRNA A DRX225547 DRR235362 sequencing assay DRR235362 P-GEAD-796 ld_AReadsPerGene.out.tab ld-1 @@61@@ld mRNA B ld mRNA B Arabidopsis thaliana 3702 repB for mRNA ld-1 SAMD00233949 ld-1 mRNA B P-GEAD-792 P-GEAD-793 P-GEAD-794 ld mRNA B polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 ld mRNA B DRX225548 DRR235363 sequencing assay DRR235363 P-GEAD-796 ld_BReadsPerGene.out.tab ld-1 @@62@@ld mRNA C ld mRNA C Arabidopsis thaliana 3702 repC for mRNA ld-1 SAMD00233950 ld-1 mRNA C P-GEAD-792 P-GEAD-793 P-GEAD-794 ld mRNA C polyA RNA SINGLE PolyA TRANSCRIPTOMIC RNA_SEQ Illumina HiSeq 4000 P-GEAD-795 ld mRNA C DRX225549 DRR235364 sequencing assay DRR235364 P-GEAD-796 ld_CReadsPerGene.out.tab ld-1 @@63@@At1g77122_WT 1 At1g77122_WT 1 Arabidopsis thaliana 3702 rep1 for H3K4me_RNA WT SAMD00233919 At1g77122_WT 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 At1g77122_WT 1 genomic DNA SINGLE PAIRED ChIP PolyA GENOMIC TRANSCRIPTOMIC CH_IP_SEQ RNA_SEQ Illumina HiSeq 4000 HiSeq X Ten P-GEAD-795 At1g77122_WT H3K4me1 DRX225504 DRR235318 sequencing assay DRR235318 P-GEAD-796 K4me1_At1g77122WT_1st_genomecov_chr1.txt WT @@64@@At1g77122_T-DNA2 1 At1g77122_T-DNA2 1 Arabidopsis thaliana 3702 rep1 for H3K4me_RNA At1g77122_T-DNA2 SAMD00233921 At1g77122_T-DNA2 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 At1g77122_T-DNA2 1 genomic DNA SINGLE PAIRED ChIP PolyA GENOMIC TRANSCRIPTOMIC CH_IP_SEQ RNA_SEQ Illumina HiSeq 4000 HiSeq X Ten P-GEAD-795 At1g77122_2 mRNA DRX225552 DRR235367 sequencing assay DRR235367 P-GEAD-796 At1g77122T-DNA_normalize.bedgraph At1g77122_T-DNA2 @@65@@WT chrRNA rep1 WT chrRNA rep1 Arabidopsis thaliana 3702 rep1 for chrRNA WT SAMD00233951 WT chrRNA rep1 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT chrRNA rep1 nuclear RNA PAIRED other TRANSCRIPTOMIC RNA_SEQ HiSeq X Ten P-GEAD-795 WT chrRNA rep.1 DRX225553 DRR235368 sequencing assay DRR235368 P-GEAD-796 WT1_chrRNA_PE150_R1_unique_normalized.bedgraph WT @@66@@fld chrRNA rep1 fld chrRNA rep1 Arabidopsis thaliana 3702 rep1 for chrRNA fld-4 SAMD00233952 fld-4 chrRNA rep1 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld chrRNA rep1 nuclear RNA PAIRED other TRANSCRIPTOMIC RNA_SEQ HiSeq X Ten P-GEAD-795 fld chrRNA rep.1 DRX225554 DRR235369 sequencing assay DRR235369 P-GEAD-796 fld1_chrRNA_PE150_R1_unique_normalized.bedgraph fld-4 @@67@@WT chrRNA rep2 WT chrRNA rep2 Arabidopsis thaliana 3702 rep2 for chrRNA WT SAMD00233953 WT chrRNA rep2 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT chrRNA rep2 nuclear RNA PAIRED other TRANSCRIPTOMIC RNA_SEQ HiSeq X Ten P-GEAD-795 WT chrRNA rep.2 DRX225555 DRR235370 sequencing assay DRR235370 P-GEAD-796 WT2_chrRNA_PE150_R1_unique_normalize.bedgraph WT @@68@@fld chrRNA rep2 fld chrRNA rep2 Arabidopsis thaliana 3702 rep2 for chrRNA fld-4 SAMD00233954 fld-4 chrRNA rep2 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld chrRNA rep2 nuclear RNA PAIRED other TRANSCRIPTOMIC RNA_SEQ HiSeq X Ten P-GEAD-795 fld chrRNA rep.2 DRX225556 DRR235371 sequencing assay DRR235371 P-GEAD-796 fld2_chrRNA_PE150_R1_unique_normalize.bedgraph fld-4 @@69@@FLAG-FLD in fri 3 FLAG-FLD in fri Arabidopsis thaliana 3702 rep4 for FLAG-FLD 3xFLAG-FLD fld-4 fri SAMD00276446 3xFLAG-FLD in fld-4 fri P-GEAD-792 P-GEAD-793 P-GEAD-794 FLAG-FLD in fri 3 genomic DNA PAIRED ChIP GENOMIC CH_IP_SEQ HiSeq X Ten P-GEAD-795 FLAG-FLD in fri 3 DRX260038 DRR270452 sequencing assay DRR270452 P-GEAD-796 FLD_fri_Col_genomecov_FLC_2nd.txt 3xFLAG-FLD fld-4 fri @@70@@FLAG-FLD in FRI 2 FLAG-FLD in FRI Arabidopsis thaliana 3702 rep4 for FLAG-FLD 3xFLAG-FLD fld-4 FRI SAMD00276447 3xFLAG-FLD in fld-4 FRI P-GEAD-792 P-GEAD-793 P-GEAD-794 FLAG-FLD in FRI 2 genomic DNA PAIRED ChIP GENOMIC CH_IP_SEQ HiSeq X Ten P-GEAD-795 FLAG-FLD in FRI 2 DRX260039 DRR270453 sequencing assay DRR270453 P-GEAD-796 FLD_FRI_Sf2_genomecov_FLC_2nd.txt 3xFLAG-FLD fld-4 FRI @@71@@At1g77122_WT 1 At1g77122_WT 1 Arabidopsis thaliana 3702 rep1 for H3K4me_RNA WT SAMD00233919 At1g77122_WT 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 At1g77122_WT 1 genomic DNA SINGLE PAIRED ChIP PolyA GENOMIC TRANSCRIPTOMIC CH_IP_SEQ RNA_SEQ Illumina HiSeq 4000 HiSeq X Ten P-GEAD-795 At1g77122_WT mRNA DRX225550 DRR235365 sequencing assay DRR235365 P-GEAD-796 At1g77122WT_normalize.bedgraph WT @@72@@At1g77122_T-DNA2 1 At1g77122_T-DNA2 1 Arabidopsis thaliana 3702 rep1 for H3K4me_RNA At1g77122_T-DNA2 SAMD00233921 At1g77122_T-DNA2 1 P-GEAD-792 P-GEAD-793 P-GEAD-794 At1g77122_T-DNA2 1 genomic DNA SINGLE PAIRED ChIP PolyA GENOMIC TRANSCRIPTOMIC CH_IP_SEQ RNA_SEQ Illumina HiSeq 4000 HiSeq X Ten P-GEAD-795 At1g77122_T-DNA2 1 DRX260041 DRR270455 sequencing assay DRR270455 P-GEAD-796 H3_At1g77122_1st_genomecov_chr1.txt At1g77122_T-DNA2 @@73@@At1g77122_WT 2 At1g77122_WT 2 Arabidopsis thaliana 3702 rep2 for H3, H3K4me1 WT SAMD00276448 At1g77122_WT 2 P-GEAD-792 P-GEAD-793 P-GEAD-794 At1g77122_WT 2 genomic DNA PAIRED ChIP GENOMIC CH_IP_SEQ HiSeq X Ten P-GEAD-795 At1g77122_WT H3 rep2 DRX260044 DRR270458 sequencing assay DRR270458 P-GEAD-796 H3_At1g77122WT_2nd_genomecov_chr1.txt WT @@74@@At1g77122_T-DNA2 2 At1g77122_T-DNA2 2 Arabidopsis thaliana 3702 rep2 for H3, H3K4me1 At1g77122_T-DNA2 SAMD00276449 At1g77122_T-DNA2 2 P-GEAD-792 P-GEAD-793 P-GEAD-794 At1g77122_T-DNA2 2 genomic DNA PAIRED ChIP GENOMIC CH_IP_SEQ HiSeq X Ten P-GEAD-795 At1g77122_2 H3 rep2 DRX260045 DRR270459 sequencing assay DRR270459 P-GEAD-796 H3_At1g77122_2nd_genomecov_chr1.txt At1g77122_T-DNA2 @@75@@At1g77122_WT 2 At1g77122_WT 2 Arabidopsis thaliana 3702 rep2 for H3, H3K4me1 WT SAMD00276448 At1g77122_WT 2 P-GEAD-792 P-GEAD-793 P-GEAD-794 At1g77122_WT 2 genomic DNA PAIRED ChIP GENOMIC CH_IP_SEQ HiSeq X Ten P-GEAD-795 At1g77122_WT H3K4me1 rep2 DRX260042 DRR270456 sequencing assay DRR270456 P-GEAD-796 K4me1_At1g77122WT_2nd_genomecov_chr1.txt WT @@76@@At1g77122_T-DNA2 2 At1g77122_T-DNA2 2 Arabidopsis thaliana 3702 rep2 for H3, H3K4me1 At1g77122_T-DNA2 SAMD00276449 At1g77122_T-DNA2 2 P-GEAD-792 P-GEAD-793 P-GEAD-794 At1g77122_T-DNA2 2 genomic DNA PAIRED ChIP GENOMIC CH_IP_SEQ HiSeq X Ten P-GEAD-795 At1g77122_2 H3K4me1 rep2 DRX260043 DRR270457 sequencing assay DRR270457 P-GEAD-796 K4me1_At1g77122_2nd_genomecov_chr1.txt At1g77122_T-DNA2 @@77@@WT chrRNA rep3 WT chrRNA rep3 Arabidopsis thaliana 3702 rep3 for chrRNA WT SAMD00276450 WT chrRNA rep3 P-GEAD-792 P-GEAD-793 P-GEAD-794 WT chrRNA rep3 nuclear RNA PAIRED other TRANSCRIPTOMIC RNA_SEQ HiSeq X Ten P-GEAD-795 WT chrRNA rep3 DRX260046 DRR270460 sequencing assay DRR270460 P-GEAD-796 WT3_chrRNA_PE150_R1_unique_normalize.bedgraph WT @@78@@fld chrRNA rep3 fld chrRNA rep3 Arabidopsis thaliana 3702 rep3 for chrRNA fld-4 SAMD00276451 fld-4 chrRNA rep3 P-GEAD-792 P-GEAD-793 P-GEAD-794 fld chrRNA rep3 nuclear RNA PAIRED other TRANSCRIPTOMIC RNA_SEQ HiSeq X Ten P-GEAD-795 fld chrRNA rep3 DRX260047 DRR270461 sequencing assay DRR270461 P-GEAD-796 fld3_chrRNA_PE150_R1_unique_normalize.bedgraph fld-4