Source Name	Characteristics[sample_name]	Characteristics[organism]	Characteristics[taxonomy_id]	Characteristics[label]	Characteristics[biomaterial_provider]	Characteristics[collection_date]	Characteristics[env_biome]	Characteristics[env_feature]	Characteristics[env_material]	Characteristics[geo_loc_name]	Characteristics[lat_lon]	Characteristics[project_name]	Characteristics[isol_growth_condt]	Characteristics[ref_biomaterial]	Characteristics[num_replicons]	Characteristics[estimated_size]	Characteristics[ploidy]	Characteristics[propagation]	Characteristics[biotic_relationship]	Characteristics[pathogenicity]	Characteristics[samp_collect_device]	Characteristics[samp_mat_process]	Characteristics[sample_size]	Characteristics[source_material_id]	Comment[BioSample]	Comment[sample_title]	Comment[description]	Protocol REF	Protocol REF	Protocol REF	Extract Name	Material Type	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SELECTION]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[INSTRUMENT_MODEL]	Protocol REF	Assay Name	Comment[SRA_EXPERIMENT]	Comment[SRA_RUN]	Technology Type	Array Data File	Protocol REF	Derived Array Data File	Factor Value[treatment]
Candida utilis_WT	Candida utilis_WT	Cyberlindnera jadinii NBRC 0988	1128122	AG4	national institute of technology and evaluation	17-Nov	plant	spent sulfite liquor containing D-xylose	water	Japan:Chiba, Kisarazu-shi, Kazusakamatari, 2-5-8	35.3324 N 139.9951 E	De novo genome assembly of Candida utilis NBRC0988 and its induced genome evolution by transient DNA breaks	1473175	22629373	6	14000000 bp	triploid	asexual	free living	nonpathogenic	Purchase from biological resource center	Culture aerobically in YPD	12.1 Gb	genomic DNA extraction kit (Qiagen)	SAMD00322310	Short read sequencing data generated from WT genome	sequence data	P-GEAD-979	P-GEAD-980	P-GEAD-981	Candida utilis_WT	total RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina iSeq 100	P-GEAD-982	Candida utilis_WT_1	DRX316433	DRR327393	sequencing assay	DRR327393	P-GEAD-983	DRR327393.processed.txt	WT
Candida utilis_WT	Candida utilis_WT	Cyberlindnera jadinii NBRC 0988	1128122	AG4	national institute of technology and evaluation	17-Nov	plant	spent sulfite liquor containing D-xylose	water	Japan:Chiba, Kisarazu-shi, Kazusakamatari, 2-5-8	35.3324 N 139.9951 E	De novo genome assembly of Candida utilis NBRC0988 and its induced genome evolution by transient DNA breaks	1473175	22629373	6	14000000 bp	triploid	asexual	free living	nonpathogenic	Purchase from biological resource center	Culture aerobically in YPD	12.1 Gb	genomic DNA extraction kit (Qiagen)	SAMD00322310	Short read sequencing data generated from WT genome	sequence data	P-GEAD-979	P-GEAD-980	P-GEAD-981	Candida utilis_WT	total RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina iSeq 100	P-GEAD-982	Candida utilis_WT_2	DRX316434	DRR327394	sequencing assay	DRR327394	P-GEAD-983	DRR327394.processed.txt	WT
Candida utilis_AG4	Candida utilis_AG4	Cyberlindnera jadinii NBRC 0988	1128122	AG4	in this project	17-Nov	plant	spent sulfite liquor containing D-xylose	water	Japan:Chiba, Kisarazu-shi, Kazusakamatari, 2-5-8	35.3324 N 139.9951 E	De novo genome assembly of Candida utilis NBRC0988 and its induced genome evolution by transient DNA breaks	1473175	22629373	6	14000000 bp	triploid	asexual	free living	nonpathogenic	Breeding of WT using TAQing2.0 system	Culture aerobically in YPD	4.2 Gb	genomic DNA extraction kit (Qiagen)	SAMD00322311	Short read sequencing data generated from AG4 genome	sequence data	P-GEAD-979	P-GEAD-980	P-GEAD-981	Candida utilis_AG4	total RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina iSeq 100	P-GEAD-982	Candida utilis_AG4_1	DRX316435	DRR327395	sequencing assay	DRR327395	P-GEAD-983	DRR327395.processed.txt	flocculation
Candida utilis_AG4	Candida utilis_AG4	Cyberlindnera jadinii NBRC 0988	1128122	AG4	in this project	17-Nov	plant	spent sulfite liquor containing D-xylose	water	Japan:Chiba, Kisarazu-shi, Kazusakamatari, 2-5-8	35.3324 N 139.9951 E	De novo genome assembly of Candida utilis NBRC0988 and its induced genome evolution by transient DNA breaks	1473175	22629373	6	14000000 bp	triploid	asexual	free living	nonpathogenic	Breeding of WT using TAQing2.0 system	Culture aerobically in YPD	4.2 Gb	genomic DNA extraction kit (Qiagen)	SAMD00322311	Short read sequencing data generated from AG4 genome	sequence data	P-GEAD-979	P-GEAD-980	P-GEAD-981	Candida utilis_AG4	total RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina iSeq 100	P-GEAD-982	Candida utilis_AG4_2	DRX316436	DRR327396	sequencing assay	DRR327396	P-GEAD-983	DRR327396.processed.txt	flocculation
Candida utilis_AG9	Candida utilis_AG9	Cyberlindnera jadinii NBRC 0988	1128122	AG9	in this project	17-Nov	plant	spent sulfite liquor containing D-xylose	water	Japan:Chiba, Kisarazu-shi, Kazusakamatari, 2-5-8	35.3324 N 139.9951 E	De novo genome assembly of Candida utilis NBRC0988 and its induced genome evolution by transient DNA breaks	1473175	22629373	6	14000000 bp	triploid	asexual	free living	nonpathogenic	Breeding of WT using TAQing2.0 system	Culture aerobically in YPD	12.1 Gb	genomic DNA extraction kit (Qiagen)	SAMD00322312	Short read sequencing data generated from AG9 genome	sequence data	P-GEAD-979	P-GEAD-980	P-GEAD-981	Candida utilis_AG9	total RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina iSeq 100	P-GEAD-982	Candida utilis_AG9_1	DRX316437	DRR327397	sequencing assay	DRR327397	P-GEAD-983	DRR327397.processed.txt	flocculation
Candida utilis_AG9	Candida utilis_AG9	Cyberlindnera jadinii NBRC 0988	1128122	AG9	in this project	17-Nov	plant	spent sulfite liquor containing D-xylose	water	Japan:Chiba, Kisarazu-shi, Kazusakamatari, 2-5-8	35.3324 N 139.9951 E	De novo genome assembly of Candida utilis NBRC0988 and its induced genome evolution by transient DNA breaks	1473175	22629373	6	14000000 bp	triploid	asexual	free living	nonpathogenic	Breeding of WT using TAQing2.0 system	Culture aerobically in YPD	12.1 Gb	genomic DNA extraction kit (Qiagen)	SAMD00322312	Short read sequencing data generated from AG9 genome	sequence data	P-GEAD-979	P-GEAD-980	P-GEAD-981	Candida utilis_AG9	total RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina iSeq 100	P-GEAD-982	Candida utilis_AG9_2	DRX316438	DRR327398	sequencing assay	DRR327398	P-GEAD-983	DRR327398.processed.txt	flocculation