Source Name	Characteristics[sample_name]	Characteristics[organism]	Characteristics[taxonomy_id]	Characteristics[strain]	Comment[BioSample]	Comment[sample_title]	Comment[description]	Protocol REF	Protocol REF	Protocol REF	Extract Name	Material Type	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SELECTION]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[INSTRUMENT_MODEL]	Protocol REF	Assay Name	Comment[SRA_EXPERIMENT]	Comment[SRA_RUN]	Technology Type	Array Data File	Protocol REF	Derived Array Data File	Factor Value[cell_type]	Factor Value[intestinal_injury]
NN1	NN1	Mus musculus	10090	missing	SAMD00425470	p57neg-normal-1_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	NN1	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-normal-1_rep2	DRX319086	DRR330082	sequencing assay	DRR330082	P-GEAD-1003	p57neg-normal-1_rep2.csv	p57-negative	Normal
NN2	NN2	Mus musculus	10090	missing	SAMD00425471	p57neg-normal-2_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	NN2	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-normal-2_rep2	DRX319087	DRR330083	sequencing assay	DRR330083	P-GEAD-1003	p57neg-normal-2_rep2.csv	p57-negative	Normal
NN3	NN3	Mus musculus	10090	missing	SAMD00425472	p57neg-normal-3_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	NN3	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-normal-3_rep2	DRX319088	DRR330084	sequencing assay	DRR330084	P-GEAD-1003	p57neg-normal-3_rep2.csv	p57-negative	Normal
NN4	NN4	Mus musculus	10090	missing	SAMD00425473	p57neg-normal-4_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	NN4	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-normal-4_rep2	DRX319089	DRR330085	sequencing assay	DRR330085	P-GEAD-1003	p57neg-normal-4_rep2.csv	p57-negative	Normal
NN5	NN5	Mus musculus	10090	missing	SAMD00425474	p57neg-normal-5_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	NN5	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-normal-5_rep2	DRX319090	DRR330086	sequencing assay	DRR330086	P-GEAD-1003	p57neg-normal-5_rep2.csv	p57-negative	Normal
NN6	NN6	Mus musculus	10090	missing	SAMD00425475	p57neg-normal-6_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	NN6	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-normal-6_rep2	DRX319091	DRR330087	sequencing assay	DRR330087	P-GEAD-1003	p57neg-normal-6_rep2.csv	p57-negative	Normal
NN7	NN7	Mus musculus	10090	missing	SAMD00425476	p57neg-normal-7_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	NN7	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-normal-7_rep2	DRX319092	DRR330088	sequencing assay	DRR330088	P-GEAD-1003	p57neg-normal-7_rep2.csv	p57-negative	Normal
NP1	NP1	Mus musculus	10090	missing	SAMD00425477	p57pos-normal-1_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	NP1	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57pos-normal-1_rep2	DRX319093	DRR330089	sequencing assay	DRR330089	P-GEAD-1003	p57pos-normal-1_rep2.csv	p57-positive	Normal
NP2	NP2	Mus musculus	10090	missing	SAMD00425478	p57pos-normal-2_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	NP2	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57pos-normal-2_rep2	DRX319094	DRR330090	sequencing assay	DRR330090	P-GEAD-1003	p57pos-normal-2_rep2.csv	p57-positive	Normal
@@10@@FN1	FN1	Mus musculus	10090	missing	SAMD00425479	p57neg-FU-1_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	FN1	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-FU-1_rep2	DRX319095	DRR330091	sequencing assay	DRR330091	P-GEAD-1003	p57neg-FU-1_rep2.csv	p57-negative	Injured
@@11@@FN2	FN2	Mus musculus	10090	missing	SAMD00425480	p57neg-FU-2_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	FN2	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-FU-2_rep2	DRX319096	DRR330092	sequencing assay	DRR330092	P-GEAD-1003	p57neg-FU-2_rep2.csv	p57-negative	Injured
@@12@@FN3	FN3	Mus musculus	10090	missing	SAMD00425481	p57neg-FU-3_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	FN3	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-FU-3_rep2	DRX319097	DRR330093	sequencing assay	DRR330093	P-GEAD-1003	p57neg-FU-3_rep2.csv	p57-negative	Injured
@@13@@FN4	FN4	Mus musculus	10090	missing	SAMD00425482	p57neg-FU-4_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	FN4	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-FU-4_rep2	DRX319098	DRR330094	sequencing assay	DRR330094	P-GEAD-1003	p57neg-FU-4_rep2.csv	p57-negative	Injured
@@14@@FN5	FN5	Mus musculus	10090	missing	SAMD00425483	p57neg-FU-5_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	FN5	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-FU-5_rep2	DRX319099	DRR330095	sequencing assay	DRR330095	P-GEAD-1003	p57neg-FU-5_rep2.csv	p57-negative	Injured
@@15@@FN6	FN6	Mus musculus	10090	missing	SAMD00425484	p57neg-FU-6_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	FN6	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-FU-6_rep2	DRX319100	DRR330096	sequencing assay	DRR330096	P-GEAD-1003	p57neg-FU-6_rep2.csv	p57-negative	Injured
@@16@@FN7	FN7	Mus musculus	10090	missing	SAMD00425485	p57neg-FU-7_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	FN7	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-FU-7_rep2	DRX319101	DRR330097	sequencing assay	DRR330097	P-GEAD-1003	p57neg-FU-7_rep2.csv	p57-negative	Injured
@@17@@FN8	FN8	Mus musculus	10090	missing	SAMD00425486	p57neg-FU-8_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	FN8	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-FU-8_rep2	DRX319102	DRR330098	sequencing assay	DRR330098	P-GEAD-1003	p57neg-FU-8_rep2.csv	p57-negative	Injured
@@18@@FN9	FN9	Mus musculus	10090	missing	SAMD00425487	p57neg-FU-9_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	FN9	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-FU-9_rep2	DRX319103	DRR330099	sequencing assay	DRR330099	P-GEAD-1003	p57neg-FU-9_rep2.csv	p57-negative	Injured
@@19@@FN10	FN10	Mus musculus	10090	missing	SAMD00425488	p57neg-FU-10_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	FN10	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-FU-10_rep2	DRX319104	DRR330100	sequencing assay	DRR330100	P-GEAD-1003	p57neg-FU-10_rep2.csv	p57-negative	Injured
@@20@@FP1	FP1	Mus musculus	10090	missing	SAMD00425489	p57pos-FU-1_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	FP1	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57pos-FU-1_rep2	DRX319105	DRR330101	sequencing assay	DRR330101	P-GEAD-1003	p57pos-FU-1_rep2.csv	p57-positive	Injured
@@21@@FP2	FP2	Mus musculus	10090	missing	SAMD00425490	p57pos-FU-2_rep2		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	FP2	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57pos-FU-2_rep2	DRX319106	DRR330102	sequencing assay	DRR330102	P-GEAD-1003	p57pos-FU-2_rep2.csv	p57-positive	Injured
@@22@@Sample19	Sample19	Mus musculus	10090	missing	SAMD00222751	p57pos-FU-1_rep1		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	Sample19	polyA RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57pos-FU-1_rep1	DRX215481	DRR225196	sequencing assay	DRR225196	P-GEAD-1003	p57pos-FU-1_rep1.csv	p57-positive	Injured
@@23@@Sample20	Sample20	Mus musculus	10090	missing	SAMD00222752	p57pos-FU-2_rep1		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	Sample20	polyA RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57pos-FU-2_rep1	DRX215482	DRR225197	sequencing assay	DRR225197	P-GEAD-1003	p57pos-FU-2_rep1.csv	p57-positive	Injured
@@24@@Sample21	Sample21	Mus musculus	10090	missing	SAMD00222753	p57pos-FU-3_rep1		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	Sample21	polyA RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57pos-FU-3_rep1	DRX215483	DRR225198	sequencing assay	DRR225198	P-GEAD-1003	p57pos-FU-3_rep1.csv	p57-positive	Injured
@@25@@Sample22	Sample22	Mus musculus	10090	missing	SAMD00222754	p57pos-FU-4_rep1		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	Sample22	polyA RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57pos-FU-4_rep1	DRX215484	DRR225199	sequencing assay	DRR225199	P-GEAD-1003	p57pos-FU-4_rep1.csv	p57-positive	Injured
@@26@@Sample23	Sample23	Mus musculus	10090	missing	SAMD00222755	p57neg-FU-1_rep1		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	Sample23	polyA RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-FU-1_rep1	DRX215485	DRR225200	sequencing assay	DRR225200	P-GEAD-1003	p57neg-FU-1_rep1.csv	p57-negative	Injured
@@27@@Sample24	Sample24	Mus musculus	10090	missing	SAMD00222756	p57neg-FU-2_rep1		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	Sample24	polyA RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-FU-2_rep1	DRX215486	DRR225201	sequencing assay	DRR225201	P-GEAD-1003	p57neg-FU-2_rep1.csv	p57-negative	Injured
@@28@@Sample25	Sample25	Mus musculus	10090	missing	SAMD00222757	p57pos-normal-1_rep1		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	Sample25	polyA RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57pos-normal-1_rep1	DRX215487	DRR225202	sequencing assay	DRR225202	P-GEAD-1003	p57pos-normal-1_rep1.csv	p57-positive	Normal
@@29@@Sample26	Sample26	Mus musculus	10090	missing	SAMD00222758	p57pos-normal-2_rep1		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	Sample26	polyA RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57pos-normal-2_rep1	DRX215488	DRR225203	sequencing assay	DRR225203	P-GEAD-1003	p57pos-normal-2_rep1.csv	p57-positive	Normal
@@30@@Sample27	Sample27	Mus musculus	10090	missing	SAMD00222759	p57pos-normal-3_rep1		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	Sample27	polyA RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57pos-normal-3_rep1	DRX215489	DRR225204	sequencing assay	DRR225204	P-GEAD-1003	p57pos-normal-3_rep1.csv	p57-positive	Normal
@@31@@Sample28	Sample28	Mus musculus	10090	missing	SAMD00222760	p57neg-normal-1_rep1		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	Sample28	polyA RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-normal-1_rep1	DRX215490	DRR225205	sequencing assay	DRR225205	P-GEAD-1003	p57neg-normal-1_rep1.csv	p57-negative	Normal
@@32@@Sample29	Sample29	Mus musculus	10090	missing	SAMD00222761	p57neg-normal-2_rep1		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	Sample29	polyA RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-normal-2_rep1	DRX215491	DRR225206	sequencing assay	DRR225206	P-GEAD-1003	p57neg-normal-2_rep1.csv	p57-negative	Normal
@@33@@Sample30	Sample30	Mus musculus	10090	missing	SAMD00222762	p57neg-normal-3_rep1		P-GEAD-999	P-GEAD-1000	P-GEAD-1001	Sample30	polyA RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1002	p57neg-normal-3_rep1	DRX215492	DRR225207	sequencing assay	DRR225207	P-GEAD-1003	p57neg-normal-3_rep1.csv	p57-negative	Normal