Source Name	Characteristics[sample_name]	Characteristics[organism]	Characteristics[taxonomy_id]	Characteristics[strain]	Characteristics[age]	Characteristics[genotype]	Characteristics[sex]	Characteristics[tissue]	Characteristics[replicate]	Comment[BioSample]	Comment[sample_title]	Protocol REF	Protocol REF	Protocol REF	Extract Name	Material Type	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SELECTION]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[INSTRUMENT_MODEL]	Protocol REF	Assay Name	Comment[SRA_EXPERIMENT]	Comment[SRA_RUN]	Technology Type	Array Data File	Protocol REF	Derived Array Data File	Factor Value[genotype]
KPC-1	KPC-1	Mus musculus	10090	C57BL/6	11w	Pdx1-Cre; Kras G12D; Trp53 R172H	male	organoids derived from gallbladder epithelium	biological replicate 1	SAMD00545457	organoids derived from gallbladder epithelium in Pdx1Cre; Kras G12D; Trp53 R172H mouse No.1	P-GEAD-1486	P-GEAD-1487	P-GEAD-1488	KPC-1	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1489	KPC-1	DRX394391	DRR408785	sequencing assay	DRR408785	P-GEAD-1490	tknakamura-0001_Run_0001.processed.txt	Pdx1-Cre; Kras G12D; Trp53 R172H
KPC-2	KPC-2	Mus musculus	10090	C57BL/6	10w	Pdx1-Cre; Kras G12D; Trp53 R172H	male	organoids derived from gallbladder epithelium	biological replicate 2	SAMD00545458	organoids derived from gallbladder epithelium in Pdx1Cre; Kras G12D; Trp53 R172H mouse No.2	P-GEAD-1486	P-GEAD-1487	P-GEAD-1488	KPC-2	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1489	KPC-2	DRX394392	DRR408786	sequencing assay	DRR408786	P-GEAD-1490	tknakamura-0001_Run_0002.processed.txt	Pdx1-Cre; Kras G12D; Trp53 R172H
KPC-5	KPC-5	Mus musculus	10090	C57BL/6	10w	Pdx1-Cre; Kras G12D; Trp53 R172H	female	organoids derived from gallbladder epithelium	biological replicate 3	SAMD00545459	organoids derived from gallbladder epithelium in Pdx1Cre; Kras G12D; Trp53 R172H mouse No.5	P-GEAD-1486	P-GEAD-1487	P-GEAD-1488	KPC-5	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1489	KPC-5	DRX394393	DRR408787	sequencing assay	DRR408787	P-GEAD-1490	tknakamura-0001_Run_0003.processed.txt	Pdx1-Cre; Kras G12D; Trp53 R172H
KPCE-3	KPCE-3	Mus musculus	10090	C57BL/6	11w	Pdx1-Cre; Kras G12D; Trp53 R172H; Elf3 f/f	male	organoids derived from gallbladder epithelium	biological replicate 1	SAMD00545460	organoids derived from gallbladder epithelium in Pdx1Cre; Kras G12D; Trp53 R172H; Elf3 f/f mouse No.3	P-GEAD-1486	P-GEAD-1487	P-GEAD-1488	KPCE-3	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1489	KPCE-3	DRX394394	DRR408788	sequencing assay	DRR408788	P-GEAD-1490	tknakamura-0001_Run_0004.processed.txt	Pdx1-Cre; Kras G12D; Trp53 R172H; Elf3 f/f
KPCE-4	KPCE-4	Mus musculus	10090	C57BL/6	11w	Pdx1-Cre; Kras G12D; Trp53 R172H; Elf3 f/f	male	organoids derived from gallbladder epithelium	biological replicate 2	SAMD00545461	organoids derived from gallbladder epithelium in Pdx1Cre; Kras G12D; Trp53 R172H; Elf3 f/f mouse No.4	P-GEAD-1486	P-GEAD-1487	P-GEAD-1488	KPCE-4	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1489	KPCE-4	DRX394395	DRR408789	sequencing assay	DRR408789	P-GEAD-1490	tknakamura-0001_Run_0005.processed.txt	Pdx1-Cre; Kras G12D; Trp53 R172H; Elf3 f/f
KPCE-5	KPCE-5	Mus musculus	10090	C57BL/6	10w	Pdx1-Cre; Kras G12D; Trp53 R172H; Elf3 f/f	female	organoids derived from gallbladder epithelium	biological replicate 3	SAMD00545462	organoids derived from gallbladder epithelium in Pdx1Cre; Kras G12D; Trp53 R172H; Elf3 f/f mouse No.5	P-GEAD-1486	P-GEAD-1487	P-GEAD-1488	KPCE-5	polyA RNA	PAIRED	Oligo-dT	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-1489	KPCE-5	DRX394396	DRR408790	sequencing assay	DRR408790	P-GEAD-1490	tknakamura-0001_Run_0006.processed.txt	Pdx1-Cre; Kras G12D; Trp53 R172H; Elf3 f/f