Source Name Characteristics[sample_name] Characteristics[organism] Characteristics[taxonomy_id] Characteristics[strain] Characteristics[biomaterial_provider] Characteristics[genotype] Characteristics[tissue] Comment[BioSample] Comment[sample_title] Protocol REF Protocol REF Protocol REF Extract Name Material Type Comment[LIBRARY_LAYOUT] Comment[LIBRARY_SELECTION] Comment[LIBRARY_SOURCE] Comment[LIBRARY_STRATEGY] Comment[INSTRUMENT_MODEL] Protocol REF Assay Name Comment[SRA_EXPERIMENT] Comment[SRA_RUN] Technology Type Array Data File Protocol REF Derived Array Data File Factor Value[developmental stage] 181128_Hiseq3000_l1_404_N732-N532_Dr_Kishi_ENCL-1_E11-1-2 181128_Hiseq3000_l1_404_N732-N532_Dr_Kishi_ENCL-1_E11-1-2 Mus musculus 10090 ICR Yukiko Gotoh lab. Wild type Embryonic brain SAMD00172244 ATAC-seq of CD133high NPCs isolated from E11 neocortex of wildtype ICR with FACS_1-2 P-GEAD-1647 P-GEAD-1648 P-GEAD-1649 181128_Hiseq3000_l1_404_N732-N532_Dr_Kishi_ENCL-1_E11-1-2 genomic DNA PAIRED other GENOMIC TN_SEQ Illumina HiSeq 3000 P-GEAD-1650 181128_Hiseq3000_l1_404_N732-N532_Dr_Kishi_ENCL-1_E11-1-2 DRX409435 DRR424222 sequencing assay DRR424222 P-GEAD-1651 ATAC-seq_E11_1.bigwig E11_1 181128_Hiseq3000_l1_417_N733-N533_Dr_Kishi_ENCL-1_E11-2-2 181128_Hiseq3000_l1_417_N733-N533_Dr_Kishi_ENCL-1_E11-2-2 Mus musculus 10090 ICR Yukiko Gotoh lab. Wild type Embryonic brain SAMD00172245 ATAC-seq of CD133high NPCs isolated from E11 neocortex of wildtype ICR with FACS_2-2 P-GEAD-1647 P-GEAD-1648 P-GEAD-1649 181128_Hiseq3000_l1_417_N733-N533_Dr_Kishi_ENCL-1_E11-2-2 genomic DNA PAIRED other GENOMIC TN_SEQ Illumina HiSeq 3000 P-GEAD-1650 181128_Hiseq3000_l1_417_N733-N533_Dr_Kishi_ENCL-1_E11-2-2 DRX409436 DRR424223 sequencing assay DRR424223 P-GEAD-1651 ATAC-seq_E11_2.bigwig E11_2 181128_Hiseq3000_l2_261_N721-N521_Dr_Kishi_No95_E11-95-2 181128_Hiseq3000_l2_261_N721-N521_Dr_Kishi_No95_E11-95-2 Mus musculus 10090 ICR Yukiko Gotoh lab. Wild type Embryonic brain SAMD00172254 ATAC-seq of CD133high NPCs isolated from E11 neocortex of wildtype ICR with FACS_95-2 P-GEAD-1647 P-GEAD-1648 P-GEAD-1649 181128_Hiseq3000_l2_261_N721-N521_Dr_Kishi_No95_E11-95-2 genomic DNA PAIRED other GENOMIC TN_SEQ Illumina HiSeq 3000 P-GEAD-1650 181128_Hiseq3000_l2_261_N721-N521_Dr_Kishi_No95_E11-95-2 DRX409437 DRR424224 sequencing assay DRR424224 P-GEAD-1651 ATAC-seq_E11_95.bigwig E11_95 181128_Hiseq3000_l2_274_N722-N522_Dr_Kishi_No95_E11-96-2 181128_Hiseq3000_l2_274_N722-N522_Dr_Kishi_No95_E11-96-2 Mus musculus 10090 ICR Yukiko Gotoh lab. Wild type Embryonic brain SAMD00172255 ATAC-seq of CD133high NPCs isolated from E11 neocortex of wildtype ICR with FACS_96-2 P-GEAD-1647 P-GEAD-1648 P-GEAD-1649 181128_Hiseq3000_l2_274_N722-N522_Dr_Kishi_No95_E11-96-2 genomic DNA PAIRED other GENOMIC TN_SEQ Illumina HiSeq 3000 P-GEAD-1650 181128_Hiseq3000_l2_274_N722-N522_Dr_Kishi_No95_E11-96-2 DRX409438 DRR424225 sequencing assay DRR424225 P-GEAD-1651 ATAC-seq_E11_96.bigwig E11_96