Source Name	Characteristics[sample_name]	Characteristics[organism]	Characteristics[taxonomy_id]	Characteristics[cultivar]	Characteristics[isolate]	Characteristics[ecotype]	Characteristics[collection_date]	Characteristics[geo_loc_name]	Characteristics[age]	Characteristics[dev_stage]	Characteristics[tissue]	Comment[BioSample]	Comment[sample_title]	Protocol REF	Protocol REF	Protocol REF	Extract Name	Material Type	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SELECTION]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[INSTRUMENT_MODEL]	Protocol REF	Assay Name	Comment[SRA_EXPERIMENT]	Comment[SRA_RUN]	Technology Type	Array Data File	Protocol REF	Derived Array Data Matrix File	Factor Value[genotype]
Ksh_1	Ksh_1	Oryza sativa Japonica Group	39947	missing	missing	missing	2023/1/7	Japan:Tsukuba	missing	missing	leaf	SAMD00736732	Koshihikari_1	P-GEAD-2140	P-GEAD-2141	P-GEAD-2142	Ksh_1	total RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-2143	Ksh_1	DRX512507	DRR528634	sequencing assay	DRR528634	P-GEAD-2144	deg_values_DESeq2_2.csv	Koshihikari
Ksh_2	Ksh_2	Oryza sativa Japonica Group	39947	missing	missing	missing	2023/1/7	Japan:Tsukuba	missing	missing	leaf	SAMD00736733	Koshihikari_2	P-GEAD-2140	P-GEAD-2141	P-GEAD-2142	Ksh_2	total RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-2143	Ksh_2	DRX512508	DRR528635	sequencing assay	DRR528635	P-GEAD-2144	deg_values_DESeq2_2.csv	Koshihikari
Ksh_3	Ksh_3	Oryza sativa Japonica Group	39947	missing	missing	missing	2023/1/7	Japan:Tsukuba	missing	missing	leaf	SAMD00736734	Koshihikari_3	P-GEAD-2140	P-GEAD-2141	P-GEAD-2142	Ksh_3	total RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-2143	Ksh_3	DRX512509	DRR528636	sequencing assay	DRR528636	P-GEAD-2144	deg_values_DESeq2_2.csv	Koshihikari
NIL_1	NIL_1	Oryza sativa Japonica Group	39947	missing	missing	missing	2023/1/7	Japan:Tsukuba	missing	missing	leaf	SAMD00736735	Koshihikari_near_isogenic_line_carrying_tgw6_1	P-GEAD-2140	P-GEAD-2141	P-GEAD-2142	NIL_1	total RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-2143	NIL_1	DRX512510	DRR528637	sequencing assay	DRR528637	P-GEAD-2144	deg_values_DESeq2_2.csv	near_isogenic_line_carrying_tgw6
NIL_2	NIL_2	Oryza sativa Japonica Group	39947	missing	missing	missing	2023/1/7	Japan:Tsukuba	missing	missing	leaf	SAMD00736736	Koshihikari_near_isogenic_line_carrying_tgw6_2	P-GEAD-2140	P-GEAD-2141	P-GEAD-2142	NIL_2	total RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-2143	NIL_2	DRX512511	DRR528638	sequencing assay	DRR528638	P-GEAD-2144	deg_values_DESeq2_2.csv	near_isogenic_line_carrying_tgw6
NIL_3	NIL_3	Oryza sativa Japonica Group	39947	missing	missing	missing	2023/1/7	Japan:Tsukuba	missing	missing	leaf	SAMD00736737	Koshihikari_near_isogenic_line_carrying_tgw6_3	P-GEAD-2140	P-GEAD-2141	P-GEAD-2142	NIL_3	total RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-2143	NIL_3	DRX512512	DRR528639	sequencing assay	DRR528639	P-GEAD-2144	deg_values_DESeq2_2.csv	near_isogenic_line_carrying_tgw6