Source Name	Characteristics[sample_name]	Characteristics[organism]	Characteristics[taxonomy_id]	Characteristics[isolate]	Characteristics[biomaterial_provider]	Characteristics[collection_date]	Characteristics[geo_loc_name]	Characteristics[age]	Characteristics[health_state]	Characteristics[sample_type]	Characteristics[sex]	Characteristics[tissue]	Characteristics[cell_subtype]	Characteristics[ethnicity]	Characteristics[population]	Characteristics[race]	Comment[BioSample]	Comment[sample_title]	Comment[description]	Protocol REF	Protocol REF	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Protocol REF	Assay Name	Technology Type	Array Design REF	Protocol REF	Array Data File	Protocol REF	Derived Array Data File	Protocol REF	Derived Array Data File	Factor Value[isolate]	Factor Value[cell_subtype]	Factor Value[replicate]
Donor1-5prime_CITEseq-Th1or2	Donor1-5prime_CITEseq-Th1or2	Homo sapiens	9606	Donor1	RIKEN	2022-11-11	Japan	50	healthy	Human	female	Blood	Th1 or Th2 cells	Japan	Japan	Japan	SAMD00770781	Blood sample of Donor1's Th1 or Th2 cells for 5' CITE-seq	Blood sample of Donor1's Th1 or Th2 cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor1-5prime_CITEseq-Th1or2	cytoplasmic RNA	P-GEAD-2546	Donor1-5prime_CITEseq-Th1or2	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor1's Th1 or Th2 cells (technical replicate 1)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D1_Th1or2_1_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D1_Th1or2_1_ctss.bed	Donor1	Th1 or Th2 cell	technical replicate 1
Donor1-5prime_CITEseq-Th1or2	Donor1-5prime_CITEseq-Th1or2	Homo sapiens	9606	Donor1	RIKEN	2022-11-11	Japan	50	healthy	Human	female	Blood	Th1 or Th2 cells	Japan	Japan	Japan	SAMD00770781	Blood sample of Donor1's Th1 or Th2 cells for 5' CITE-seq	Blood sample of Donor1's Th1 or Th2 cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor1-5prime_CITEseq-Th1or2	cytoplasmic RNA	P-GEAD-2546	Donor1-5prime_CITEseq-Th1or2	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor1's Th1 or Th2 cells (technical replicate 2)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D1_Th1or2_2_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D1_Th1or2_2_ctss.bed	Donor1	Th1 or Th2 cell	technical replicate 2
Donor1-5prime_CITEseq-Th1or2	Donor1-5prime_CITEseq-Th1or2	Homo sapiens	9606	Donor1	RIKEN	2022-11-11	Japan	50	healthy	Human	female	Blood	Th1 or Th2 cells	Japan	Japan	Japan	SAMD00770781	Blood sample of Donor1's Th1 or Th2 cells for 5' CITE-seq	Blood sample of Donor1's Th1 or Th2 cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor1-5prime_CITEseq-Th1or2	cytoplasmic RNA	P-GEAD-2546	Donor1-5prime_CITEseq-Th1or2	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor1's Th1 or Th2 cells (technical replicate 3)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D1_Th1or2_3_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D1_Th1or2_3_ctss.bed	Donor1	Th1 or Th2 cell	technical replicate 3
Donor2-5prime_CITEseq-Th1or2	Donor2-5prime_CITEseq-Th1or2	Homo sapiens	9606	Donor2	RIKEN	2022-11-18	Japan	36	healthy	Human	female	Blood	Th1 or Th2 cells	Japan	Japan	Japan	SAMD00770782	Blood sample of Donor2's Th1 or Th2 cells for 5' CITE-seq	Blood sample of Donor2's Th1 or Th2 cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor2-5prime_CITEseq-Th1or2	cytoplasmic RNA	P-GEAD-2546	Donor2-5prime_CITEseq-Th1or2	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor2's Th1 or Th2 cells (technical replicate 1)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D2_Th1or2_1_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D2_Th1or2_1_ctss.bed	Donor2	Th1 or Th2 cell	technical replicate 1
Donor2-5prime_CITEseq-Th1or2	Donor2-5prime_CITEseq-Th1or2	Homo sapiens	9606	Donor2	RIKEN	2022-11-18	Japan	36	healthy	Human	female	Blood	Th1 or Th2 cells	Japan	Japan	Japan	SAMD00770782	Blood sample of Donor2's Th1 or Th2 cells for 5' CITE-seq	Blood sample of Donor2's Th1 or Th2 cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor2-5prime_CITEseq-Th1or2	cytoplasmic RNA	P-GEAD-2546	Donor2-5prime_CITEseq-Th1or2	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor2's Th1 or Th2 cells (technical replicate 2)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D2_Th1or2_2_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D2_Th1or2_2_ctss.bed	Donor2	Th1 or Th2 cell	technical replicate 2
Donor2-5prime_CITEseq-Th1or2	Donor2-5prime_CITEseq-Th1or2	Homo sapiens	9606	Donor2	RIKEN	2022-11-18	Japan	36	healthy	Human	female	Blood	Th1 or Th2 cells	Japan	Japan	Japan	SAMD00770782	Blood sample of Donor2's Th1 or Th2 cells for 5' CITE-seq	Blood sample of Donor2's Th1 or Th2 cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor2-5prime_CITEseq-Th1or2	cytoplasmic RNA	P-GEAD-2546	Donor2-5prime_CITEseq-Th1or2	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor2's Th1 or Th2 cells (technical replicate 3)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D2_Th1or2_3_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D2_Th1or2_3_ctss.bed	Donor2	Th1 or Th2 cell	technical replicate 3
Donor2-5prime_CITEseq_and_MASseq-Treg	Donor2-5prime_CITEseq_and_MASseq-Treg	Homo sapiens	9606	Donor2	RIKEN	2022-11-18	Japan	36	healthy	Human	female	Blood	CD4+CD25+ T cells	Japan	Japan	Japan	SAMD00770783	Blood sample of Donor2's CD4+CD25+ T cells for 5' CITE-seq and 5' MAS-seq	Blood sample of Donor2's CD4+CD25+ T cells for 5' CITE-seq and 5' MAS-seq	P-GEAD-2544	P-GEAD-2545	Donor2-5prime_CITEseq_and_MASseq-Treg	cytoplasmic RNA	P-GEAD-2546	Donor2-5prime_CITEseq_and_MASseq-Treg	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor2's CD4+CD25+ T cells (technical replicate 1)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D2_Treg_1_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D2_Treg_1_ctss.bed	Donor2	CD4+CD25+ T cell	technical replicate 1
Donor2-5prime_CITEseq_and_MASseq-Treg	Donor2-5prime_CITEseq_and_MASseq-Treg	Homo sapiens	9606	Donor2	RIKEN	2022-11-18	Japan	36	healthy	Human	female	Blood	CD4+CD25+ T cells	Japan	Japan	Japan	SAMD00770783	Blood sample of Donor2's CD4+CD25+ T cells for 5' CITE-seq and 5' MAS-seq	Blood sample of Donor2's CD4+CD25+ T cells for 5' CITE-seq and 5' MAS-seq	P-GEAD-2544	P-GEAD-2545	Donor2-5prime_CITEseq_and_MASseq-Treg	cytoplasmic RNA	P-GEAD-2546	Donor2-5prime_CITEseq_and_MASseq-Treg	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor2's CD4+CD25+ T cells (technical replicate 2)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D2_Treg_2_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D2_Treg_2_ctss.bed	Donor2	CD4+CD25+ T cell	technical replicate 2
Donor2-5prime_CITEseq_and_MASseq-Treg	Donor2-5prime_CITEseq_and_MASseq-Treg	Homo sapiens	9606	Donor2	RIKEN	2022-11-18	Japan	36	healthy	Human	female	Blood	CD4+CD25+ T cells	Japan	Japan	Japan	SAMD00770783	Blood sample of Donor2's CD4+CD25+ T cells for 5' CITE-seq and 5' MAS-seq	Blood sample of Donor2's CD4+CD25+ T cells for 5' CITE-seq and 5' MAS-seq	P-GEAD-2544	P-GEAD-2545	Donor2-5prime_CITEseq_and_MASseq-Treg	cytoplasmic RNA	P-GEAD-2546	Donor2-5prime_CITEseq_and_MASseq-Treg	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor2's CD4+CD25+ T cells (technical replicate 3)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D2_Treg_3_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D2_Treg_3_ctss.bed	Donor2	CD4+CD25+ T cell	technical replicate 3
Donor2-5prime_CITEseq-Tfh	Donor2-5prime_CITEseq-Tfh	Homo sapiens	9606	Donor2	RIKEN	2022-11-18	Japan	36	healthy	Human	female	Blood	T follicular helper cells	Japan	Japan	Japan	SAMD00770784	Blood sample of Donor2's T follicular helper cells for 5' CITE-seq	Blood sample of Donor2's T follicular helper cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor2-5prime_CITEseq-Tfh	cytoplasmic RNA	P-GEAD-2546	Donor2-5prime_CITEseq-Tfh	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor2's T follicular helper cells (technical replicate 1)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D2_Tfh_1_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D2_Tfh_1_ctss.bed	Donor2	T follicular helper cell	technical replicate 1
Donor2-5prime_CITEseq-Tfh	Donor2-5prime_CITEseq-Tfh	Homo sapiens	9606	Donor2	RIKEN	2022-11-18	Japan	36	healthy	Human	female	Blood	T follicular helper cells	Japan	Japan	Japan	SAMD00770784	Blood sample of Donor2's T follicular helper cells for 5' CITE-seq	Blood sample of Donor2's T follicular helper cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor2-5prime_CITEseq-Tfh	cytoplasmic RNA	P-GEAD-2546	Donor2-5prime_CITEseq-Tfh	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor2's T follicular helper cells (technical replicate 2)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D2_Tfh_2_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D2_Tfh_2_ctss.bed	Donor2	T follicular helper cell	technical replicate 2
Donor2-5prime_CITEseq-Th17	Donor2-5prime_CITEseq-Th17	Homo sapiens	9606	Donor2	RIKEN	2022-11-18	Japan	36	healthy	Human	female	Blood	Th17 cells	Japan	Japan	Japan	SAMD00770785	Blood sample of Donor2's Th17 cells for 5' CITE-seq	Blood sample of Donor2's Th17 cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor2-5prime_CITEseq-Th17	cytoplasmic RNA	P-GEAD-2546	Donor2-5prime_CITEseq-Th17	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor2's Th17 cells (technical replicate 1)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D2_Th17_1_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D2_Th17_1_ctss.bed	Donor2	Th17 cell	technical replicate 1
Donor2-5prime_CITEseq-Th17	Donor2-5prime_CITEseq-Th17	Homo sapiens	9606	Donor2	RIKEN	2022-11-18	Japan	36	healthy	Human	female	Blood	Th17 cells	Japan	Japan	Japan	SAMD00770785	Blood sample of Donor2's Th17 cells for 5' CITE-seq	Blood sample of Donor2's Th17 cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor2-5prime_CITEseq-Th17	cytoplasmic RNA	P-GEAD-2546	Donor2-5prime_CITEseq-Th17	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor2's Th17 cells (technical replicate 2)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D2_Th17_2_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D2_Th17_2_ctss.bed	Donor2	Th17 cell	technical replicate 2
Donor2-5prime_CITEseq-LAG3	Donor2-5prime_CITEseq-LAG3	Homo sapiens	9606	Donor2	RIKEN	2022-11-18	Japan	36	healthy	Human	female	Blood	CD4+LAG3+ T cells	Japan	Japan	Japan	SAMD00770786	Blood sample of Donor2's CD4+LAG3+ cells for 5' CITE-seq	Blood sample of Donor2's Th17 cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor2-5prime_CITEseq-LAG3	cytoplasmic RNA	P-GEAD-2546	Donor2-5prime_CITEseq-LAG3	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor2's CD4+LAG3+ T cells	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D2_LAG3_1_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D2_LAG3_1_ctss.bed	Donor2	CD4+LAG3+ T cell	none
Donor3-5prime_CITEseq-Th1or2	Donor3-5prime_CITEseq-Th1or2	Homo sapiens	9606	Donor3	RIKEN	2021-02-17	Japan	40	healthy	Human	male	Blood	Th1 or Th2 cells	Japan	Japan	Japan	SAMD00770787	Blood sample of Donor3's Th1 or Th2 cells for 5' CITE-seq	Blood sample of Donor3's Th1 or Th2 cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor3-5prime_CITEseq-Th1or2	cytoplasmic RNA	P-GEAD-2546	Donor3-5prime_CITEseq-Th1or2	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor3's Th1 or Th2 cells (technical replicate 1)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D3_Th1or2_1_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D3_Th1or2_1_ctss.bed	Donor3	Th1 or Th2 cell	technical replicate 1
Donor3-5prime_CITEseq-Th1or2	Donor3-5prime_CITEseq-Th1or2	Homo sapiens	9606	Donor3	RIKEN	2021-02-17	Japan	40	healthy	Human	male	Blood	Th1 or Th2 cells	Japan	Japan	Japan	SAMD00770787	Blood sample of Donor3's Th1 or Th2 cells for 5' CITE-seq	Blood sample of Donor3's Th1 or Th2 cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor3-5prime_CITEseq-Th1or2	cytoplasmic RNA	P-GEAD-2546	Donor3-5prime_CITEseq-Th1or2	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor3's Th1 or Th2 cells (technical replicate 2)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D3_Th1or2_2_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D3_Th1or2_2_ctss.bed	Donor3	Th1 or Th2 cell	technical replicate 2
Donor3-5prime_CITEseq_Bulk_rCD4	Donor3-5prime_CITEseq_Bulk_rCD4	Homo sapiens	9606	Donor3	RIKEN	2021-01-25	Japan	38	healthy	Human	male	Blood	bulk resting CD4+ T cells	Japan	Japan	Japan	SAMD00770788	Blood sample of Donor3's bulk CD4 cells for 5' CITE-seq	Blood sample of Donor3's bulk CD4 cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor3-5prime_CITEseq_Bulk_rCD4	cytoplasmic RNA	P-GEAD-2546	Donor3-5prime_CITEseq_Bulk_rCD4	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor3's bulk resting CD4+ T cells (technical replicate 1)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D3_Bulk-rCD4_1_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D3_Bulk-rCD4_1_ctss.bed	Donor3	bulk resting CD4+ T cell	technical replicate 1
Donor3-5prime_CITEseq_Bulk_rCD4	Donor3-5prime_CITEseq_Bulk_rCD4	Homo sapiens	9606	Donor3	RIKEN	2021-01-25	Japan	38	healthy	Human	male	Blood	bulk resting CD4+ T cells	Japan	Japan	Japan	SAMD00770788	Blood sample of Donor3's bulk CD4 cells for 5' CITE-seq	Blood sample of Donor3's bulk CD4 cells for 5' CITE-seq	P-GEAD-2544	P-GEAD-2545	Donor3-5prime_CITEseq_Bulk_rCD4	cytoplasmic RNA	P-GEAD-2546	Donor3-5prime_CITEseq_Bulk_rCD4	not applicable	P-GEAD-2547	5' CITE-seq (epitope) of Donor3's bulk resting CD4+ T cells (technical replicate 2)	array assay	A-GEAD-11	P-GEAD-2548	raw-data-available-jga.txt	P-GEAD-2549	CITEseq_transcriptome_D3_Bulk-rCD4_2_CellRanger_feature_bc_matrix.tar.gz	P-GEAD-2549	CITEseq_transcriptome_D3_Bulk-rCD4_2_ctss.bed	Donor3	bulk resting CD4+ T cell	technical replicate 2