Source Name	Characteristics[sample_name]	Characteristics[organism]	Characteristics[taxonomy_id]	Characteristics[biological_replicate]	Characteristics[collection_date]	Characteristics[geo_loc_name]	Characteristics[cell_line]	Characteristics[cell_type]	Characteristics[treatment]	Comment[BioSample]	Comment[sample_title]	Protocol REF	Protocol REF	Protocol REF	Extract Name	Material Type	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SELECTION]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[INSTRUMENT_MODEL]	Protocol REF	Assay Name	Comment[SRA_EXPERIMENT]	Comment[SRA_RUN]	Technology Type	Array Data File	Protocol REF	Derived Array Data Matrix File	Factor Value[genetic_modification]
H_1	H_1	Homo sapiens	9606	1	2023-02-22	Japan	HSC-4	oral squamous cell carcinoma cell line	control siRNA transfected by lipofectamine	SAMD00631023	HSC-4 with control siRNA sequences, replicate 1	P-GEAD-3291	P-GEAD-3292	P-GEAD-3293	H_1	total RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-3294	cont_rep1	DRX477639	DRR493440	sequencing assay	DRR493440	P-GEAD-3295	genes_counts_matrix_processed_GEA.csv	none
H_2	H_2	Homo sapiens	9606	2	2023-02-22	Japan	HSC-4	oral squamous cell carcinoma cell line	control siRNA transfected by lipofectamine	SAMD00631024	HSC-4 with control siRNA sequences, replicate 2	P-GEAD-3291	P-GEAD-3292	P-GEAD-3293	H_2	total RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-3294	cont_rep2	DRX477640	DRR493441	sequencing assay	DRR493441	P-GEAD-3295	genes_counts_matrix_processed_GEA.csv	none
H_3	H_3	Homo sapiens	9606	3	2023-02-22	Japan	HSC-4	oral squamous cell carcinoma cell line	control siRNA transfected by lipofectamine	SAMD00631025	HSC-4 with control siRNA sequences, replicate 3	P-GEAD-3291	P-GEAD-3292	P-GEAD-3293	H_3	total RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-3294	cont_rep3	DRX477641	DRR493442	sequencing assay	DRR493442	P-GEAD-3295	genes_counts_matrix_processed_GEA.csv	none
si_1	si_1	Homo sapiens	9606	1	2023-02-22	Japan	HSC-4	oral squamous cell carcinoma cell line	siRNA against LAD1 transfected by lipofectamine	SAMD00631026	HSC-4 with siRNA against LAD1, replicate 1	P-GEAD-3291	P-GEAD-3292	P-GEAD-3293	si_1	total RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-3294	si_rep1	DRX477642	DRR493443	sequencing assay	DRR493443	P-GEAD-3295	genes_counts_matrix_processed_GEA.csv	LAD1 knockdown
si_2	si_2	Homo sapiens	9606	2	2023-02-22	Japan	HSC-4	oral squamous cell carcinoma cell line	siRNA against LAD1 transfected by lipofectamine	SAMD00631027	HSC-4 with siRNA against LAD1, replicate 2	P-GEAD-3291	P-GEAD-3292	P-GEAD-3293	si_2	total RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-3294	si_rep2	DRX477643	DRR493444	sequencing assay	DRR493444	P-GEAD-3295	genes_counts_matrix_processed_GEA.csv	LAD1 knockdown
si_3	si_3	Homo sapiens	9606	3	2023-02-22	Japan	HSC-4	oral squamous cell carcinoma cell line	siRNA against LAD1 transfected by lipofectamine	SAMD00631028	HSC-4 with siRNA against LAD1, replicate 3	P-GEAD-3291	P-GEAD-3292	P-GEAD-3293	si_3	total RNA	PAIRED	PolyA	TRANSCRIPTOMIC	RNA_SEQ	Illumina NovaSeq 6000	P-GEAD-3294	si_rep3	DRX477644	DRR493445	sequencing assay	DRR493445	P-GEAD-3295	genes_counts_matrix_processed_GEA.csv	LAD1 knockdown