Source Name	Characteristics[sample_name]	Characteristics[organism]	Characteristics[taxonomy_id]	Characteristics[collection_date]	Characteristics[geo_loc_name]	Characteristics[cell_line]	Characteristics[cell_type]	Characteristics[dev_stage]	Comment[BioSample]	Comment[sample_title]	Comment[description]	Protocol REF	Protocol REF	Protocol REF	Protocol REF	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Protocol REF	Assay Name	Technology Type	Array Design REF	Protocol REF	Array Data File	Protocol REF	Derived Array Data File	Factor Value[sample_name]
S.pyogenes_SSI-1_HeLa_infection_1hr_CBX115	S.pyogenes_SSI-1_HeLa_infection_1hr_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes	OD600=0.6	SAMD00878949	S.pyogenes SSI-1_HeLa infection_1hr		P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_HeLa_infection_1hr_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_HeLa_infection_1hr_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_HeLa_infection_1hr_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_HeLa_infection_1hr_CBX115
S.pyogenes_SSI-1_HeLa_infection_2hr_CBX115	S.pyogenes_SSI-1_HeLa_infection_2hr_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes	OD600=0.6	SAMD00878950	S.pyogenes SSI-1_HeLa infection_2hr		P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_HeLa_infection_2hr_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_HeLa_infection_2hr_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_HeLa_infection_2hr_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_HeLa_infection_2hr_CBX115
S.pyogenes_SSI-1_HeLa_infection_3hr_CBX115	S.pyogenes_SSI-1_HeLa_infection_3hr_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes	OD600=0.6	SAMD00878951	S.pyogenes SSI-1_HeLa infection_3hr		P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_HeLa_infection_3hr_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_HeLa_infection_3hr_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_HeLa_infection_3hr_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_HeLa_infection_3hr_CBX115
S.pyogenes_SSI-1_HeLa_infection_4hr_CBX115	S.pyogenes_SSI-1_HeLa_infection_4hr_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes	OD600=0.6	SAMD00878952	S.pyogenes SSI-1_HeLa infection_4hr		P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_HeLa_infection_4hr_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_HeLa_infection_4hr_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_HeLa_infection_4hr_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_HeLa_infection_4hr_CBX115
S.pyogenes_SSI-1_Kyse_infection_1hr_CBX115	S.pyogenes_SSI-1_Kyse_infection_1hr_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes	OD600=0.6	SAMD00878953	S.pyogenes SSI-1_Kyse infection_1hr	Kyse is KYSE510 cell	P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_Kyse_infection_1hr_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_Kyse_infection_1hr_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_Kyse_infection_1hr_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_Kyse_infection_1hr_CBX115
S.pyogenes_SSI-1_Kyse_infection_2hr_CBX115	S.pyogenes_SSI-1_Kyse_infection_2hr_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes	OD600=0.6	SAMD00878954	S.pyogenes SSI-1_Kyse infection_2hr	Kyse is KYSE510 cell	P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_Kyse_infection_2hr_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_Kyse_infection_2hr_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_Kyse_infection_2hr_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_Kyse_infection_2hr_CBX115
S.pyogenes_SSI-1_Kyse_infection_3hr_CBX115	S.pyogenes_SSI-1_Kyse_infection_3hr_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes	OD600=0.6	SAMD00878955	S.pyogenes SSI-1_Kyse infection_3hr	Kyse is KYSE510 cell	P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_Kyse_infection_3hr_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_Kyse_infection_3hr_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_Kyse_infection_3hr_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_Kyse_infection_3hr_CBX115
S.pyogenes_SSI-1_Kyse_infection_4hr_CBX115	S.pyogenes_SSI-1_Kyse_infection_4hr_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes	OD600=0.6	SAMD00878956	S.pyogenes SSI-1_Kyse infection_4hr	Kyse is KYSE510 cell	P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_Kyse_infection_4hr_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_Kyse_infection_4hr_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_Kyse_infection_4hr_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_Kyse_infection_4hr_CBX115
S.pyogenes_SSI-1_MEF_infection_2hr_CBX115	S.pyogenes_SSI-1_MEF_infection_2hr_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes	OD600=0.6	SAMD00878957	S.pyogenes SSI-1_MEF infection_2hr	MEF is Mouse Embryonic Fibloblast	P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_MEF_infection_2hr_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_MEF_infection_2hr_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_MEF_infection_2hr_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_MEF_infection_2hr_CBX115
S.pyogenes_SSI-1_MEF_infection_4hr_CBX115	S.pyogenes_SSI-1_MEF_infection_4hr_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes	OD600=0.6	SAMD00878958	S.pyogenes SSI-1_MEF infection_4hr	MEF is Mouse Embryonic Fibloblast	P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_MEF_infection_4hr_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_MEF_infection_4hr_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_MEF_infection_4hr_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_MEF_infection_4hr_CBX115
S.pyogenes_SSI-1_MEF_Atg5-_-_infection_2hr_CBX115	S.pyogenes_SSI-1_MEF_Atg5-_-_infection_2hr_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes	OD600=0.6	SAMD00878959	S.pyogenes SSI-1_MEF Atg5-/- infection_2hr	MEF Atg5-/- is Mouse Embryonic Fibloblast Atg5 knock out cell	P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_MEF_Atg5-_-_infection_2hr_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_MEF_Atg5-_-_infection_2hr_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_MEF_Atg5-_-_infection_2hr_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_MEF_Atg5-_-_infection_2hr_CBX115
S.pyogenes_SSI-1_MEF_Atg5-_-_infection_4hr_CBX115	S.pyogenes_SSI-1_MEF_Atg5-_-_infection_4hr_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes	OD600=0.6	SAMD00878960	S.pyogenes SSI-1_MEF Atg5-/- infection_4hr	MEF Atg5-/- is Mouse Embryonic Fibloblast Atg5 knock out cell	P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_MEF_Atg5-_-_infection_4hr_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_MEF_Atg5-_-_infection_4hr_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_MEF_Atg5-_-_infection_4hr_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_MEF_Atg5-_-_infection_4hr_CBX115
S.pyogenes_SSI-1_mid-log_phase_CBX115	S.pyogenes_SSI-1_mid-log_phase_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes	OD600=0.6	SAMD00878961	S.pyogenes SSI-1 mid-log phase	OD600=0.6	P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_mid-log_phase_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_mid-log_phase_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_mid-log_phase_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_mid-log_phase_CBX115
S.pyogenes_SSI-1_genome_CBX115	S.pyogenes_SSI-1_genome_CBX115	Streptococcus pyogenes	1314	missing: data agreement established pre-2023	missing: data agreement established pre-2023	SSI-1	Streptococcus pyogenes		SAMD00878962	S.pyogenes SSI-1 genome		P-GEAD-4186	P-GEAD-4187	P-GEAD-4192	P-GEAD-4193	S.pyogenes_SSI-1_genome_CBX115	other	P-GEAD-4188	S.pyogenes_SSI-1_genome_CBX115	other	P-GEAD-4189	S.pyogenes_SSI-1_genome_CBX115	array assay	A-GEAD-192	P-GEAD-4190	raw_data_files.tar.gz	P-GEAD-4191	processed_data_files.tar.gz	S.pyogenes_SSI-1_genome_CBX115