DDBJ Amino Acid Sequence Database (DAD) Release 1.1 August 23, 1996 This is a test release of DDBJ Amino Acid Sequence Database (DAD). This database was created by extracting all translated sequences from DDBJ entries. The release 1.1 was made from DDBJ release 26 (June 1996). 1. Format of DAD Entries DAD is divided into 16 files according to the organisms from which amino acid sequences are derived. The divisions are the same as those of DDBJ DNA Database. Please refer to the release note of DDBJ (filename: ddbjrel.txt). All the amino acid sequences are stored in a fasta-like format (ODEN format). The first line of an entry has a character '>' followed by an accession number of the entry, its PID (protein ID), and the product name if it is known. Accession number of DAD is comprised of DDBJ accession number and a consecutive integer that begins from 1. These two numbers are combined by a hyphen (-). For example, amino acid sequences extracted from DDBJ entry D12345 have accession numbers D12345-1, D12345-2, etc. An amino acid sequence begins from the next line of accession number. Up to sixty amino acids are written on one line. Following the amino acid sequence, there is a double slash (//), which means the end of the entry. Below is an example of DAD entry. >X65727-1 PID:g825605 glutathione S-transferase MAEKPKLHYSNTRGRMESIRWLLAAAGVEFEEKFIKSAEDLDKLRNDGYLMFQQVPMVEI DGMKLVQTRAILNYIASKYNLYGKDIKEKALIDMYIEGIADLGEMILLLPFTQPEEQDAK LALIQEKTKNRYFPAFEKVLKSHGQDYLVGNKLSRADIHLVELLYYVEELDSSLISSFPL LKALKTRISNLPTVKKFLQPGSPRKPPMDEKSLEESRKIFRF // 2. Statistics of DAD The following are statistics of this release of DAD. total number of entries 182,159 total length of sequences 55,959,988 aa average length 307.2 aa name of longest sequence X90568-1 PID:g1212992 length of longest sequence 26,926 aa (X90568-1) file number of entries ------------------------------ ddbjbct.tr 40457 ddbjest.tr 888 ddbjhum.tr 19406 ddbjinv.tr 18876 ddbjmam.tr 5665 ddbjorg.tr 627 ddbjpat.tr 1811 ddbjphg.tr 2406 ddbjpln.tr 29356 ddbjpri.tr 1457 ddbjrod.tr 19015 ddbjsts.tr 11 ddbjsyn.tr 1550 ddbjuna.tr 569 ddbjvrl.tr 32769 ddbjvrt.tr 7296 ------------------------------ total 182159