DNA Data Bank of Japan DNA Database Release 46, Jul. 2001, including 12,313,759 entries, 13,037,646,166 bases This database may be copied and redistributed without permission on the condition that all the statements in this release note are reproduced in each copy. The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank, and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of Jun. 28, 2001. This unified database was made possible thanks to the international collaboration among the three data banks. All the entries have accordingly been annotated with the feature keys common to them. All the entries designated by the accession numbers with the prefixes "C", "D", "E", "AB", "AG", "AK", "AP", "AT", "AU", "AV", "BA" and "BB" have been collected and processed by DDBJ, and the rest have been prepared by GenBank and EMBL/EBI. There have been a number of genome projects going on worldwide. Among them human genome projects have probably been most productive and yielded a large number of ordinary sequences, huge amounts of ESTs and quantities of genome sequences. Thus, we have the human(HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. Note that the EST division also contains human sequences. The present release does not have the ORG division. Thus, if you are interested in human mitochondrial sequences, for example, you are now advised to refer to the HUM division. The HUM division in this release was recorded in 10 files each of which had 300 MB storage capacity. Incidentally, the BCT, INV and PLN divisions were recorded in 3, 3, 4 files, respectively. This release also includes an independent division (PAT) for patent data. The patent data are those which the Japanese Patent Office (JPO), United States Patent and Trademark Office (USPTO), and the European Patent Office (EPO) collected and processed. The accession numbers of the patent data collected by the Japanese Patent Office start with the prefix "E", those collected and supplied by USPTO and GenBank respectively start with "I" and "AR", and those collected and supplied by EPO and EMBL/EBI respectively start with "A" and "AX". The entries with the prefixes "I","AR", "A","AX" and "E" were allocated to a file (ddbjpat.seq) in the DDBJ format. Note also that unauthorized use of the patent data may cause legal issues for which we take no responsibility. In the present release, the SOURCE in the flat file was revisited and revised if necessary in accordance with the unified taxonomy database common to the three data banks. The number of ESTs has been increasing at an enormous rate and is expected to be growing even more rapidly in the future. Therefore, EST data were stored in 90 files each of which had the same storage capacity as the file of the HUM division. The present release includes the GSS division. GSS stands for the Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. This division was recorded in 27 files similarly to the HUM division. This release also includes the High Throughput Genome Sequence (HTGS) which comes mainly from genome project teams which deal with a clone as a sequencing unit. HTGS in this release were recorded in 20 files similarly to the HUM division. The index files are not presented in this release except for ddbjacc.idx, ddbjgen.idx, ddbjjou.idx, and ddbjkey.idx. Instead, we have included a program by which to make the index files not presented in this release. For the use of the program, see the files, seq2indexes.doc, seq2indexes.c, and seq2indexes.h in this release. The present release contains amino acid sequences that were translated from the corresponding nucleotide sequences in our database. In the translation we paid much attention to the fact that some species or organella have a codon different from the universal one, and used the proper codon table. If you find an incorrect codon in a translated sequence, please let us know. The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence (see Table 1). It is expressed as AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. We terminated the RNA division. The RNA data were redistributed according to the category of the organism. Therefore, you will find a human RNA sequence, for example, in the HUM division. The present release includes a division, CON. The CON division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. The current number of the entries of this division is 9,179. The present release also includes, HTC (High Throughput cDNA). The definition of the HTC division is as follows. This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. This release was published by the following DDBJ staff. General administration T. Gojobori, M. Ota, Y. Fukuma, Y. Katsube, M. Maruyama, K. Okuda, J. Sugiyama, H. Tsutsui (hold), Y. Ueda, A. Watanabe Database construction Y. Tateno, S. Miyazaki, H. Aono, N. Asakawa, M. Ejima, M. Gojobori, A. Hasegawa, A. Hashizume, M. Hirashima, J. Mashima, A. Okada, M. Okaneya, T. Okido, M. Suzuki, H. Tsutsui, T. Umezawa, Y. Yamamoto Database software development and management H. Sugawara, S. Miyazaki (hold), M. Fumoto, H. Hashimoto, T. Iizuka (hold), N. Ishizaka, K. Kaneda, T. Kato, Y. Kawanishi, K. Mamiya, S. Misu, T. Mizunuma, T. Okayama, Y. Sugiyama, K. Suzuki, N. Takahashi, T. Takaki System management K. Nishikawa, K. Ikeo, N. Hoshi, T.Iizuka, I. Mochizuki, M. Nagura, T. Osawa, F. Sugiyama, K. Yoshioka Editorial and public relations N. Saitou, K. Fukami-Kobayashi, Y. Daito, H. Ichikawa, K. Ichikawa, T. Kawamoto, S. Nagira Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Mishima 411-8540, Japan Phone: +81 559 81 6853 FAX: +81 559 81 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp (for DDBJ sequence data submission system SAKURA) Acknowledgement: We are grateful to NCBI and EMBL/EBI for a firm friendship and an excellent collaboration with us. We also thank the Japanese Patent Office for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ Database Release History Release Date Entries Bases Comments ------------------------------------------------------------------------------ 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------------------------------------------------------------ This release covers 17 categories of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct.*** Category for bacteria ddbjest.*** Category for EST (expressed sequence tag) ddbjhtg.*** Category for HTG (high throughput genomic sequencing) ddbjhum.*** Category for human ddbjgss.*** Category for GSS (Genome Survey Sequence) ddbjinv.*** Category for invertebrates ddbjmam.*** Category for mammals other than primates and rodents ddbjpat.*** Category for patents ddbjphg.*** Category for phages ddbjpln.*** Category for plants ddbjpri.*** Category for primates other than human ddbjrod.*** Category for rodents ddbjsts.*** Category for STS (sequence tagged site) ddbjsyn.*** Category for synthetic DNAs ddbjuna.*** Category for unannotated sequences ddbjvrl.*** Category for viruses ddbjvrt.*** Category for vertebrates other than mammals ------------------------------------------------------------------------------ Each category then has the following nine files. Note that all the files except for ddbj***.seq are created by the user by use of seq2indexes as mentioned in the release note. ------------------------------------------------------------------------------ ddbj***.seq List of an entry in DDBJ format, see Table 1. ddbj***.acc List of the accession numbers, see Table 2 . ddbj***.aut List of the authors, see Table 3. ddbj***.dir List of the short directory in DDBJ style, see Table 4. ddbj***.idx List of indices, see Table 5. ddbj***.jou List of the journals, see Table 6. ddbj***.key List of the key words, see Table 7. ddbj***.org List of the species names, see Table 8. ddbj***.sdr List of the short directory in DDBJ style, see Table 9. ------------------------------------------------------------------------------ Table 1. Part of the contents in the file 'ddbjbct.seq'. This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA BCT 07-FEB-1999 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli (strain:W3110) cDNA to mRNA. ORGANISM Escherichia coli Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Miki Jishage, National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail:mjishage@lab.nig.ac.jp, Tel:0559-81-6742, Fax:0559-81-6746) REFERENCE 2 (bases 1 to 993) AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 (sites) AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 (sites) AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol Gen Genet 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /organism="Escherichia coli" /sequenced_mol="cDNA to mRNA" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK" /transl_table=11 mutation 75 /citation=[3] /replace="t" mutation 97 /citation=[3] /replace="t" mutation 99 /citation=[3] /replace="t" mutation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t 0 others ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ Table 2. Part of the contents in the file 'ddbjbct.acc'. The first column refers to the secondary accession number, second column to the locus name, and third to the primary accession number. The primary number may be the same as the secondary number. They are arranged in the ascending order of the secondary accession numbers. ------------------------------------------------------------------------------ D00001 -> ECOPBPAA X04516 D00002 -> ECOPYRH X04469 D00006 -> PNS981TET D00006 D00020 -> COLE2LYS D00020 D00021 -> COLE31YS D00021 D00038 -> BRLAM330 D00038 D00066 -> BAC139AC D00066 D00067 -> ECONANA M20207 D00069 -> ECOUVRD2 D00069 D00087 -> BACXYNAA D00087 ------------------------------------------------------------------------------ Table 3. Part of the contents in the file 'ddbjbct.aut'. For each author name given on the left to the arrow, the corresponding locus name and primary accession number are respectively listed on the right. They are arranged in the alphabetical order of the author names. ------------------------------------------------------------------------------ Aan,F. -> STYCRR X05210 Aan,F. -> STYENZI M76176 Aaronson,W. -> ECOKPSD M64977 Aaronson,W. -> ECONEUA J05023 Abad-Lapuebla,M.A. -> VIBTDHI D90238 Abdel-Mawgood,A.L. -> CYAPSBHA X16394 Abdel-Meguid,S.S. -> TRNGDRECM J01843 Abdelal,A. -> STYCARA M36540 Abdelal,A. -> STYCARAB X13200 Abdelal,A.H. -> PSENOSA M60717 ------------------------------------------------------------------------------ Table 4. Part of the short directory in DDBJ style in the file 'ddbjbct.dir'. For each locus name given in the first column, the corresponding primary accession number, molecular type, number of nucleotide pairs, and description for the locus are respectively listed. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ ABCAARAA M34830 ds-DNA 1624 A.aceti acetic acid resistance protein (aarA) gene, complete cds. ABCADHCC D00635 ds-DNA 4230 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. ABCALDH D00521 ds-DNA 2683 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. ABCBCSAA M37202 ds-DNA 9540 A.xylinum bcs B, bcs C and bcs D genes, complete cds and bcs A gene, partial cds. ABCCELA M76548 ds-DNA 1165 Acetobacter xylinum UDP pyrophosphorylase (celA) gene, complete cds. ABCCELSYN X54676 ds-DNA 5363 A. xylinum gene for cellulose biosynthesis ABCIS1380 D10043 ds-DNA 1665 A.pasteurianus insertion sequence IS1380. ACAADH1 D90004 ds-DNA 2467 Acetobacter aceti(K6033) alcohol dehydrogenase subunit gene(adh1). ACCAAC2 M62833 ds-DNA 1123 Acinetobacter baumannii aminoglycoside acetyltr ansferase (aac2) gene, complete cds. ACCACEAA M62822 ds-DNA 1874 A.baumannii chloramphenicol acetyltransferase (cat) gene, complete cds. ------------------------------------------------------------------------------ Table 5. Part of the contents in the file 'ddbjbct.idx'. The first column refers to the locus name, second column to the starting site of the locus in byte, and third to its ending site in byte. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ %***************************** #ABCAARAA 0 3211 #ABCADHCC 3212 10608 #ABCALDH 10609 15864 #ABCBCSAA 15865 29583 #ABCCELA 29584 32289 #ABCCELSYN 32290 40960 #ABCIS1380 40961 44711 #ACAADH1 44712 49357 #ACCAAC2 49358 52395 ------------------------------------------------------------------------------ Table 6. Part of the contents in the file 'ddbjbct.jou'. This gives information on the journal in which sequence data were published. ------------------------------------------------------------------------------ (in) Chaloupka,J. and Krumphanzl,V. (Eds.); Extracellular Enzymes of Microorganisms: 129-137, Plenum Press, New York (1987) -> BACAMYABS M57457 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16S M55011 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SA M55006 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SB M55008 (in) Hoch,J.A. and Setlow,P. (Eds.); Molecular Biology of Microbial Differentiation: 85-94, American Society for Microbiology, Washington, DC (1985) -> BACSPOII M57606 (in) Holmgren,A. (Ed.); Thioredoxin and Glutaredoxin Systems: Structure and Function: 11-19, Unknown name, Unknown city (1986) -> ECOTRXA1 M54881 (in) Kjeldgaard,N.C. and Maaloe,O. (Eds.); Control of ribosome synthesis: 138-143, Academic Press, New York (1976) -> ECOLAC J01636 (in) Losick,R. and Chamberlin,M. (Eds.); RNA polymerase: 455-472, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1976) -> ECOTGY1 K01197 (in) Sikes,C.S. and Wheeler,A.P. (Eds.); Surface reactive peptides and polymers. Discovery and commercialization.: 186-200, American Chemical Society, Washington, D.C. (1991) -> ECOTGP J01714 (in) Sund,H. and Blauer,G. (Eds.); Protein-Ligand Interactions: 193-207, Walter de Gruyter, New York (1975) -> ECOLAC J01636 (in) Wu,R. and Grossman,L. (Eds.); Methods in Enzymology, Recombinant DNA, part E: In press, Academic Press, New York, N.Y. (1986) -> PLMCG M11320 Acta Microbiol. Pol. 35, 175-190 (1986) -> ECOTGG1 M54893 Actinomycetologica 5, 14-17 (1991) -> STMARGG D00799 Adv. Biophys. 21, 115-133 (1986) -> R10REP M26840 Adv. Biophys. 21, 175-192 (1986) -> ECONUSAA M26839 Adv. Enzyme Regul. 21, 225-237 (1983) -> ECOPURFA M26893 Adv. Exp. Med. Biol. 195, 239-246 (1986) -> ECOAPT M14040 Agric. Biol. Chem. 50, 2155-2158 (1986) -> ECONANA M20207 Agric. Biol. Chem. 50, 2771-2778 (1986) -> BRLAM330 D00038 Agric. Biol. Chem. 51, 2019-2022 (1987) -> BACCGT D00129 Agric. Biol. Chem. 51, 2641-2648 (1987) -> STRSAGP D00219 Agric. Biol. Chem. 51, 2807-2809 (1987) -> BACPGECR M35503 Agric. Biol. Chem. 51, 3133-3135 (1987) -> BACXYLAP D00312 Agric. Biol. Chem. 51, 455-463 (1987) -> BACHDCRY D00117 Agric. Biol. Chem. 51, 953-955 (1987) -> BACXYNAA D00087 Agric. Biol. Chem. 52, 1565-1573 (1988) -> BACIP135 D00348 Agric. Biol. Chem. 52, 1785-1789 (1988) -> BACTMR D00343 Agric. Biol. Chem. 52, 2243-2246 (1988) -> PSEGI D00342 Agric. Biol. Chem. 52, 399-406 (1988) -> BACAMYEB M35517 Agric. Biol. Chem. 52, 479-487 (1988) -> ECAPALI D00217 ------------------------------------------------------------------------------ Table 7. Part of the contents in the file 'ddbjbct.key'. For the locus and accession number respectively given on the right to the arrow, the corresponding key words are listed on the left. ------------------------------------------------------------------------------ A.aceti acetic acid resistance protein (aarA) gene, complete cds. -> ABCAARAA M34830 acetic acid resistance protein. -> ABCAARAA M34830 Cloning of genes responsible for acetic acid resistance in acetobacter aceti -> ABCAARAA M34830 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. -> ABCADHCC D00635 alcohol dehydrogenase; cytochrome c. -> ABCADHCC D00635 Cloning and sequencing of the gene cluster encoding two subunits of membrane- bound alcohol dehydrogenase from Acetobacter polyoxogenes -> ABCADHCC D00635 These data kindly submitted in computer readable form by: Toshimi Tamaki Nakano Central Biochemical Institute 2-6 Nakamura-cho Handa-shi, Aichi-ken 475 Japan Phone: 0569-21-3331 Fax: 0569-23-8486 -> ABCADHCC D00635 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. -> ABCALDH D00521 aldehyde dehydrogenase gene; ethanol oxidation; membrane-bound enzyme. -> ABCALDH D00521 Nucleotide sequence of the membrane-bound aldehyde dehydrogenase gene from Acetobacter polyoxogenes -> ABCALDH D00521 ------------------------------------------------------------------------------ Table 8. Part of the contents in the file 'ddbjbct.org'. For the locus and accession number respectively given on the right to the arrow, the corresponding taxonomic names are listed on the left. They are arranged in the alphabetical order of the species names. ------------------------------------------------------------------------------ A. nidulans 6301 DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRUBPS X00019 A. nidulans DNA, clone pAN4. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGGX X00343 A. nidulans DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGG X00512 A. polyoxogenes genomic DNA. Acetobacter polyoxogenes Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. - > ABCADHCC D00635 A. quadruplicatum (strain PR-6) DNA, clone pAQPR1. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUPCAB K02660 A. quadruplicatum (strain PR6) DNA. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUCPCAB K02659 A. vinelandii DNA. Azotobacter vinelandii Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> AVINIFUSV M17349 A.aceti (strain 10-8) DNA, clone pAR1611. Acetobacter aceti Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> ABCAARAA M34830 A.actinomycetemcomitans (strain JP2) DNA, clone lambda-OP8. Actinobacillus actinomycetemcomitans Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Pasteurellaceae. -> ACNLKTXN M27399 A.anitratum DNA, clone pLJD1. Acinetobacter anitratum Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Neisseriaceae. -> ACCCITSYN M33037 ------------------------------------------------------------------------------ Table 9. Part of the short directory file in DDBJ style in the file 'ddbjbct.sdr'. The short directory file contains brief descriptions of all of the sequence entries contained in the DDBJ style. ------------------------------------------------------------------------------ ABCAARAA A.aceti acetic acid resistance protein (aarA) gene, complete 1624bp ABCADHCC A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and 4230bp ABCALDH A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, 2683bp ABCBCSABCD A.xylinum bcs A, B, C and D genes, complete cds's. 9540bp ABCCELA Acetobacter xylinum UDP pyrophosphorylase (celA) gene, 1165bp ABCCELSYN A. xylinum gene for cellulose biosynthesis 5363bp ABCIS1380 A.pasteurianus insertion sequence IS1380. 1665bp ACAADH1 Acetobacter aceti(K6033) alcohol dehydrogenase subunit 2467bp ACCAAC2 Acinetobacter baumannii aminoglycoside acetyltransferase 1123bp ACCACEAA A.baumannii chloramphenicol acetyltransferase (cat) gene, 1874bp ACCAPHA6 Acinetobacter baumannii aphA-6 gene. 1170bp ACCBENABCA A.calcoaceticus BenA, BenB, BenC, BenD, and BenE proteins 15922bp ACCCAT Acinetobacter calcoaceticus cat operon. 15922bp ACCCATAM A.calcoaceticus catA and catM genes, encoding catechol 1, 5537bp ACCCHMO Acinetobacter sp. cyclohexanone monooxygenase gene, complete 2128bp ACCCITSYN A.anitratum citrate synthase gene, complete cds. 1895bp ------------------------------------------------------------------------------ In addition to the 9 tables the four following index files are included in this release. These files were prepared irrespective of the 14 categories of taxonomic divisions. Accession number index file Keyword phrase index file Journal citation index file Gene name index file A brief description is given for each file in the following. Table 10. Part of the accession number index file in the 'ddbjacc.idx'. The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00100 PSEASPAA BCT D00100 D00101 RABNP450R MAM D00101 D00102 HUMLTX HUM D00102 D00103 AFARRN5SA BCT D00103 AFRRN5SA BCT X05517 D00104 AFARRN5SB BCT D00104 AFRRN5SB BCT X05518 D00105 AFARRN5S BCT D00105 ASRRN5S BCT X05524 D00106 ACH5SRR BCT D00106 AXRRN5S BCT X05522 AXRRN5SA BCT X05523 D00107 ACH5SRRX BCT D00107 ACRRN5S BCT X05521 ------------------------------------------------------------------------------ Table 11. Part of the keyword phrase index file in the 'ddbjkey.idx'. Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ A CHANNEL DROCHA INV M17155 A COMPONENT SQLCVEA VRL M38183 A LOCUS GORGOGOA3 PRI X54375 GORGOGOA4 PRI X54376 A LOCUS ALLELE GORA0101 PRI X60258 GORA0201 PRI X60259 GORA0401 PRI X60257 GORA0501 PRI X60256 A MULTI-GENE FAMILY RICGLUTE PLN D00584 A PROTEIN MS2AAR PHG M25187 ST1APCS PHG M25396 A SEQUENCE HS5TOA30 VRL D00148 HS5TOA31 VRL D00147 ------------------------------------------------------------------------------ Table 12. Part of the author name index file in 'ddbjaut.idx'. The author name index file lists all of the author names that appear in the citations. ------------------------------------------------------------------------------ ABE,A. HUMMHDRBWE PRI M27509 HUMMHDRBWF PRI M27510 HUMMHDRBWG PRI M27511 YSCGAL11A PLN M22481 ABE,C. S85445 BCT S85445 ABE,E. M23442 UNA M23442 ABE,H. CHKADF VRT M55660 CHKCOF VRT M55659 ABE,K. CHPCLAC PRI D11383 CHPIMRF PRI D11384 CUGCUR09 PLN X64110 CUGCUR37 PLN X64111 HPCCEXPA VRL M55970 HPCCPEP1 VRL D10687 HPCCPEP2 VRL D10688 HPCHABC82 VRL X51587 HPCNS2APA VRL M55972 HPCNS2PA VRL M55971 HPCNS2PB VRL M55973 HPCNS5PA VRL M55974 MUSKE2 ROD M65255 MUSKE2A ROD M65256 MZECYS PLN D10622 RICCPI PLN J03469 RICGLUTE PLN D00584 RICLNOCI PLN J05595 RICOCS PLN M29259 RICORYII PLN X57658 RICOZA PLN D90406 RICOZB PLN D90407 RICOZC PLN D90408 S54524 PLN S54524 S54526 PLN S54526 S54530 PLN S54530 S73960 ROD S73960 ------------------------------------------------------------------------------ Table 13. Part of the journal citation index file in 'ddbjjou.idx'. The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ ACTA BIOCHIM. BIOPHYS. SIN. 23, 246-253 (1992) HUMPLASINS HUM M98056 ACTA BIOCHIM. BIOPHYS. SIN. 28, 233-239(1996) TKTII PLN X82230 ACTA BIOCHIM. POL. 24, 301-318 (1977) LUPTRFJ PLN K00345 LUPTRFN PLN K00346 ACTA BIOCHIM. POL. 26, 369-381(1979) HVTRNPHE PLN X02683 ACTA BIOCHIM. POL. 29, 143-149 (1982) EMEMTA PLN M32572 EMEMTB PLN M32573 EMEMTC PLN M32574 EMEMTD PLN M32575 EMEMTE PLN M32576 ACTA BIOCHIM. POL. 34, 21-27 (1987) LUPNOSP PLN M32571 ------------------------------------------------------------------------------ Table 14. Part of the gene name index file in 'ddbjgen.idx'. This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ AACC8 STMAACC8 BCT M55426 AACC9 MPUAACC9 BCT M55427 AACT HUMA1ACM PRI K01500 HUMA1ACMA PRI X00947 HUMA1ACMB PRI M18035 HUMAACT1 PRI M18906 HUMAACT2 PRI M22533 HUMAACTA PRI J05176 AAD INTINTORF BCT L06418 LMOMO229D BCT X17478 AAD A1 ENTAAC3VI BCT M88012 AAD9 ENEAAD9A BCT M69221 AADA LMOMO229A BCT X17479 S52249 BCT S52249 SYNAADA SYN M60473 TRNTAAB BCT M55547 TRNTN21CAS BCT M86913 ------------------------------------------------------------------------------ The files in this release are arranged in the following order with non- labeled format. Release note ddbjrel.txt 1042 records Category for bacteria1, 37494 entries, 119019059 bases ddbjbct1.seq 4920526 records Category for bacteria2, 41033 entries, 120503432 bases ddbjbct2.seq 4858069 records Category for bacteria3, 23095 entries, 49799816 bases ddbjbct3.seq 2158295 records Category for EST1 (expressed sequence tag), 93251 entries, 34644184 bases ddbjest1.seq 5514096 records Category for EST2 (expressed sequence tag), 96122 entries, 39188994 bases ddbjest2.seq 5559204 records Category for EST3 (expressed sequence tag), 97511 entries, 37831525 bases ddbjest3.seq 5555195 records Category for EST4 (expressed sequence tag), 90870 entries, 27877052 bases ddbjest4.seq 5479450 records Category for EST5 (expressed sequence tag), 97152 entries, 38210467 bases ddbjest5.seq 5573562 records Category for EST6 (expressed sequence tag), 101462 entries, 40211748 bases ddbjest6.seq 5622731 records Category for EST7 (expressed sequence tag), 100414 entries, 38842884 bases ddbjest7.seq 5585545 records Category for EST8 (expressed sequence tag), 99287 entries, 38403913 bases ddbjest8.seq 5558689 records Category for EST9 (expressed sequence tag), 100945 entries, 40004663 bases ddbjest9.seq 5614172 records Category for EST10 (expressed sequence tag), 101628 entries, 39760972 bases ddbjest10.seq 5586515 records Category for EST11 (expressed sequence tag), 99113 entries, 41128192 bases ddbjest11.seq 5546091 records Category for EST12 (expressed sequence tag), 101487 entries, 44208644 bases ddbjest12.seq 5590869 records Category for EST13 (expressed sequence tag), 107804 entries, 43192390 bases ddbjest13.seq 5626798 records Category for EST14 (expressed sequence tag), 103233 entries, 41842980 bases ddbjest14.seq 5580835 records Category for EST15 (expressed sequence tag), 99079 entries, 41560178 bases ddbjest15.seq 5535917 records Category for EST16 (expressed sequence tag), 95197 entries, 42098161 bases ddbjest16.seq 5526400 records Category for EST17 (expressed sequence tag), 100938 entries, 41811699 bases ddbjest17.seq 5605658 records Category for EST18 (expressed sequence tag), 99423 entries, 43607374 bases ddbjest18.seq 5583496 records Category for EST19 (expressed sequence tag), 95174 entries, 40088868 bases ddbjest19.seq 5539041 records Category for EST20 (expressed sequence tag), 99555 entries, 42025422 bases ddbjest20.seq 5559200 records Category for EST21 (expressed sequence tag), 102173 entries, 48527847 bases ddbjest21.seq 5330384 records Category for EST22 (expressed sequence tag), 109457 entries, 75950464 bases ddbjest22.seq 5468721 records Category for EST23 (expressed sequence tag), 119761 entries, 60166477 bases ddbjest23.seq 5725115 records Category for EST24 (expressed sequence tag), 97540 entries, 30915297 bases ddbjest24.seq 5590148 records Category for EST25 (expressed sequence tag), 90971 entries, 23520725 bases ddbjest25.seq 5549075 records Category for EST26 (expressed sequence tag), 79080 entries, 22753956 bases ddbjest26.seq 5389371 records Category for EST27 (expressed sequence tag), 59401 entries, 14659250 bases ddbjest27.seq 5216700 records Category for EST28 (expressed sequence tag), 59215 entries, 14688839 bases ddbjest28.seq 5205453 records Category for EST29 (expressed sequence tag), 102438 entries, 41746754 bases ddbjest29.seq 5603110 records Category for EST30 (expressed sequence tag), 119970 entries, 55909955 bases ddbjest30.seq 5695083 records Category for EST31 (expressed sequence tag), 102497 entries, 53592533 bases ddbjest31.seq 5421844 records Category for EST32 (expressed sequence tag), 98031 entries, 42126167 bases ddbjest32.seq 5541593 records Category for EST33 (expressed sequence tag), 89713 entries, 39585924 bases ddbjest33.seq 5409547 records Category for EST34 (expressed sequence tag), 93522 entries, 40173879 bases ddbjest34.seq 5466884 records Category for EST35 (expressed sequence tag), 105357 entries, 42688584 bases ddbjest35.seq 5684060 records Category for EST36 (expressed sequence tag), 93801 entries, 36815418 bases ddbjest36.seq 5560188 records Category for EST37 (expressed sequence tag), 88569 entries, 40472859 bases ddbjest37.seq 5447528 records Category for EST38 (expressed sequence tag), 99412 entries, 45040970 bases ddbjest38.seq 5614263 records Category for EST39 (expressed sequence tag), 98924 entries, 43016764 bases ddbjest39.seq 5544494 records Category for EST40 (expressed sequence tag), 98343 entries, 33909804 bases ddbjest40.seq 5611060 records Category for EST41 (expressed sequence tag), 107376 entries, 48311413 bases ddbjest41.seq 5675190 records Category for EST42 (expressed sequence tag), 59523 entries, 15055915 bases ddbjest42.seq 5150098 records Category for EST43 (expressed sequence tag), 58514 entries, 16392862 bases ddbjest43.seq 5128529 records Category for EST44 (expressed sequence tag), 59282 entries, 16323576 bases ddbjest44.seq 5108188 records Category for EST45 (expressed sequence tag), 59237 entries, 16456829 bases ddbjest45.seq 5110070 records Category for EST46 (expressed sequence tag), 59091 entries, 16661686 bases ddbjest46.seq 5111858 records Category for EST47 (expressed sequence tag), 58879 entries, 16237054 bases ddbjest47.seq 5141733 records Category for EST48 (expressed sequence tag), 59939 entries, 16513698 bases ddbjest48.seq 5101758 records Category for EST49 (expressed sequence tag), 60601 entries, 16411297 bases ddbjest49.seq 5107464 records Category for EST50 (expressed sequence tag), 60522 entries, 16966091 bases ddbjest50.seq 5090420 records Category for EST51 (expressed sequence tag), 61049 entries, 15675984 bases ddbjest51.seq 5235822 records Category for EST52 (expressed sequence tag), 96250 entries, 38538652 bases ddbjest52.seq 5562895 records Category for EST53 (expressed sequence tag), 97583 entries, 37951310 bases ddbjest53.seq 5653049 records Category for EST54 (expressed sequence tag), 101985 entries, 56275957 bases ddbjest54.seq 5542451 records Category for EST55 (expressed sequence tag), 102491 entries, 55350294 bases ddbjest55.seq 5550650 records Category for EST56 (expressed sequence tag), 100623 entries, 49929957 bases ddbjest56.seq 5549466 records Category for EST57 (expressed sequence tag), 99176 entries, 55082122 bases ddbjest57.seq 5538020 records Category for EST58 (expressed sequence tag), 96639 entries, 46277915 bases ddbjest58.seq 5510471 records Category for EST59 (expressed sequence tag), 97894 entries, 57372162 bases ddbjest59.seq 5519959 records Category for EST60 (expressed sequence tag), 96428 entries, 50277422 bases ddbjest60.seq 5503398 records Category for EST61 (expressed sequence tag), 91649 entries, 51972591 bases ddbjest61.seq 5446830 records Category for EST62 (expressed sequence tag), 95680 entries, 46846087 bases ddbjest62.seq 5513472 records Category for EST63 (expressed sequence tag), 96176 entries, 58978037 bases ddbjest63.seq 5471966 records Category for EST64 (expressed sequence tag), 98635 entries, 60412314 bases ddbjest64.seq 5518643 records Category for EST65 (expressed sequence tag), 96709 entries, 51856941 bases ddbjest65.seq 5502100 records Category for EST66 (expressed sequence tag), 91399 entries, 39010777 bases ddbjest66.seq 5550088 records Category for EST67 (expressed sequence tag), 87471 entries, 46075965 bases ddbjest67.seq 5378520 records Category for EST68 (expressed sequence tag), 97969 entries, 57800593 bases ddbjest68.seq 5536391 records Category for EST69 (expressed sequence tag), 94800 entries, 48947197 bases ddbjest69.seq 5502499 records Category for EST70 (expressed sequence tag), 97579 entries, 46611035 bases ddbjest70.seq 5553595 records Category for EST71 (expressed sequence tag), 99170 entries, 35518035 bases ddbjest71.seq 5623316 records Category for EST72 (expressed sequence tag), 97247 entries, 52542195 bases ddbjest72.seq 5496443 records Category for EST73 (expressed sequence tag), 94348 entries, 52552462 bases ddbjest73.seq 5407814 records Category for EST74 (expressed sequence tag), 103432 entries, 62739109 bases ddbjest74.seq 5485884 records Category for EST75 (expressed sequence tag), 97581 entries, 62048804 bases ddbjest75.seq 5492009 records Category for EST76 (expressed sequence tag), 95971 entries, 60971548 bases ddbjest76.seq 5490836 records Category for EST77 (expressed sequence tag), 92408 entries, 59390849 bases ddbjest77.seq 5361403 records Category for EST78 (expressed sequence tag), 97320 entries, 57725050 bases ddbjest78.seq 5466545 records Category for EST79 (expressed sequence tag), 98419 entries, 62840724 bases ddbjest79.seq 5548679 records Category for EST80 (expressed sequence tag), 93164 entries, 64079924 bases Ddbjest80.seq 5379491 records Category for EST81 (expressed sequence tag), 101120 entries, 55972130 bases Ddbjest81.seq 5588717 records Category for EST82 (expressed sequence tag), 101623 entries, 37272948 bases Ddbjest82.seq 5654424 records Category for EST83 (expressed sequence tag), 122159 entries, 57037573 bases Ddbjest83.seq 5742767 records Category for EST84 (expressed sequence tag), 124719 entries, 43265416 bases Ddbjest84.seq 5855218 records Category for EST85 (expressed sequence tag), 93282 entries, 33564876 bases Ddbjest85.seq 5565346 records Category for EST86 (expressed sequence tag), 96347 entries, 35489340 bases Ddbjest86.seq 5519396 records Category for EST87 (expressed sequence tag), 99366 entries, 35530021 bases Ddbjest87.seq 5645947 records Category for EST88 (expressed sequence tag), 99868 entries, 35216821 bases Ddbjest88.seq 5604244 records Category for EST89 (expressed sequence tag), 94320 entries, 38063443 bases Ddbjest89.seq 5512089 records Category for EST90 (expressed sequence tag), 6916 entries, 2212851 bases Ddbjest90.seq 350309 records Category for GSS1 (genome survey sequence), 113514 entries, 76128354 bases ddbjgss1.seq 5394138 records Category for GSS2 (genome survey sequence), 93267 entries, 74186067 bases ddbjgss2.seq 5269983 records Category for GSS3 (genome survey sequence), 84515 entries, 72070797 bases ddbjgss3.seq 5215100 records Category for GSS4 (genome survey sequence), 90582 entries, 67968752 bases ddbjgss4.seq 5176070 records Category for GSS5 (genome survey sequence), 121154 entries, 49541747 bases ddbjgss5.seq 6035095 records Category for GSS6 (genome survey sequence), 118010 entries, 55196307 bases ddbjgss6.seq 5953935 records Category for GSS7 (genome survey sequence), 106770 entries, 55353859 bases ddbjgss7.seq 5818983 records Category for GSS8 (genome survey sequence), 105532 entries, 53681675 bases ddbjgss8.seq 5852518 records Category for GSS9 (genome survey sequence), 102287 entries, 51491361 bases ddbjgss9.seq 5771168 records Category for GSS10 (genome survey sequence), 102444 entries, 51447469 bases ddbjgss10.seq 5767211 records Category for GSS11 (genome survey sequence, 95885 entries, 50116677 bases ddbjgss11.seq 5617262 records Category for GSS12 (genome survey sequence), 100517 entries, 55355420 bases ddbjgss12.seq 5683580 records Category for GSS13 (genome survey sequence), 90464 entries, 47571403 bases ddbjgss13.seq 5524994 records Category for GSS14 (genome survey sequence), 97833 entries, 49280030 bases ddbjgss14.seq 5665773 records Category for GSS15 (genome survey sequence), 95108 entries, 42432059 bases ddbjgss15.seq 5669417 records Category for GSS16 (genome survey sequence), 99064 entries, 58767471 bases ddbjgss16.seq 5649371 records Category for GSS17 (genome survey sequence), 91998 entries, 42263616 bases ddbjgss17.seq 5627168 records Category for GSS18 (genome survey sequence), 75260 entries, 38298258 bases ddbjgss18.seq 5341404 records Category for GSS19 (genome survey sequence), 76160 entries, 35965060 bases ddbjgss19.seq 5358624 records Category for GSS20 (genome survey sequence), 81914 entries, 45602976 bases ddbjgss20.seq 5403778 records Category for GSS21 (genome survey sequence), 81698 entries, 38871482 bases ddbjgss21.seq 5403685 records Category for GSS22 (genome survey sequence), 83013 entries, 50474305 bases ddbjgss22.seq 5432352 records Category for GSS23 (genome survey sequence), 88846 entries, 37174676 bases ddbjgss23.seq 5585812 records Category for GSS24 (genome survey sequence), 76817 entries, 36130509 bases ddbjgss24.seq 5369381 records Category for GSS25 (genome survey sequence), 91847 entries, 44110245bases ddbjgss25.seq 5587931 records Category for GSS26 (genome survey sequence), 100113 entries, 51414662 bases ddbjgss26.seq 5721360 records Category for GSS27 (genome survey sequence), 56159 entries, 25111144 bases ddbjgss27.seq 2826581 records Category for HTC (high throughput cDNA), 19169 entries, 23440379 bases ddbjhtc.seq 2256820 records Category for HTG1 (high throughput genome sequence), 1526 entries, 229221480 bases ddbjhtg1.seq 3985445 records Category for HTG2 (high throughput genome sequence), 1540 entries, 227178622 bases ddbjhtg2.seq 4000195 records Category for HTG3 (high throughput genome sequence), 3329 entries, 226553025 bases ddbjhtg3.seq 4015706 records Category for HTG4 (high throughput genome sequence), 2390 entries, 226093806 bases ddbjhtg4.seq 4013745 records Category for HTG5 (high throughput genome sequence), 2457 entries, 227959667 bases ddbjhtg5.seq 4000598 records Category for HTG6 (high throughput genome sequence), 1477 entries, 226868925 bases ddbjhtg6.seq 4003095 records Category for HTG7 (high throughput genome sequence), 1549 entries, 225391627 bases ddbjhtg7.seq 4014043 records Category for HTG8 (high throughput genome sequence), 1419 entries, 227097718 bases ddbjhtg8.seq 4003731 records Category for HTG9 (high throughput genome sequence), 7590 entries, 216422068 bases ddbjhtg9.seq 4099308 records Category for HTG10 (high throughput genome sequence), 26388 entries, 187007117 bases ddbjhtg10.seq 4366282 records Category for HTG11 (high throughput genome sequence), 7979 entries, 215783303 bases ddbjhtg11.seq 4103592 records Category for HTG12 (high throughput genome sequence), 4703 entries, 222572618 bases ddbjhtg12.seq 4041633 records Category for HTG13 (high throughput genome sequence), 5651 entries, 221629200 bases ddbjhtg13.seq 4054444 records Category for HTG14 (high throughput genome sequence), 7270 entries, 215751758 bases ddbjhtg14.seq 4097145 records Category for HTG15 (high throughput genome sequence), 3885 entries, 220466753 bases ddbjhtg15.seq 4048308 records Category for HTG16 (high throughput genome sequence), 1527 entries, 229767269 bases ddbjhtg16seq 3989416 records Category for HTG17 (high throughput genome sequence), 1368 entries, 229331663 bases ddbjhtg17.seq 3986663 records Category for HTG18 (high throughput genome sequence), 1272 entries, 229114329 bases ddbjhtg18.seq 3985409 records Category for HTG19 (high throughput genome sequence), 1383 entries, 229788475 bases ddbjhtg19.seq 3986383 records Category for HTG20 (high throughput genome sequence), 1398 entries, 218060825 bases ddbjhtg20.seq 3772048 records Category for human1, 7553 entries, 201946156 bases ddbjhum1.seq 4311144 records Category for human2, 1562 entries, 212955317 bases ddbjhum2.seq 4213430 records Category for human3, 1523 entries, 218491116 bases ddbjhum3.seq 4135627 records Category for human4, 18758 entries, 190601298 bases ddbjhum4.seq 4425032 records Category for human5, 36187 entries, 158499616 bases ddbjhum5.seq 4658218 records Category for human6, 4394 entries, 201917601 bases ddbjhum6.seq 4177929 records Category for human7, 2446 entries, 211203068 bases ddbjhum7.seq 4112392 records Category for huma8, 2211 entries, 214824763 bases ddbjhum8.seq 4149466 records Category for human9, 77595 entries, 108520978 bases ddbjhum9.seq 5325681 records Category for human10, 5551 entries, 39202391 bases ddbjhum10.seq 984861 records Category for invertebrates1, 6983 entries, 207917439 bases ddbjinv1.seq 4123275 records Category for invertebrates2, 53811 entries, 136864568 bases ddbjinv2.seq 4901407 records Category for invertebrates3, 32041 entries, 106247234 bases ddbjinv3.seq 3571497 records Category for mammals, 32705 entries, 29160609 bases ddbjmam.seq 1833618 records Category for patents, 387914 entries, 157451193 bases ddbjpat.seq 11171753 records Category for phages, 1718 entries, 5205439 bases ddbjphg.seq 228023 records Category for plants1, 40098 entries, 151161734 bases ddbjpln1.seq 4701142 records Category for plants2, 60420 entries, 121995157 bases ddbjpln2.seq 5040117 records Category for plants3, 61603 entries, 124933144 bases ddbjpln3.seq 5000691 records Category for plants4, 314 entries, 1308010 bases ddbjpln4.seq 46178 records Category for primates, 12220 entries, 13438018 bases ddbjpri.seq 759515 records Category for rodents, 68120 entries, 139422584 bases ddbjrod.seq 5510146 records Category for STS (sequence tagged site), 143015 entries, 74317399 bases ddbjsts.seq 8944833 records Category for synthetic DNAs, 4363 entries, 11285831 bases ddbjsyn.seq 404973 records Category for unannotated sequences, 562 entries, 332904 bases ddbjuna.seq 26154 records Category for viruses, 127315 entries, 111669891bases ddbjvrl.seq 7808924 records Category for vertebrates, 57365 entries, 52532765bases ddbjvrt.seq 3283757 records Accession number index file ddbjacc.idx 12342885 records Keyword phrase index file ddbjkey.idx 4439778 records Journal citation index file ddbjjou.idx 6912673 records Gene name index file ddbjgen.idx 672983 records