DNA Data Bank of Japan DNA Database Release 48, Jan. 2002, including 15,016,100 entries, 16,197,713,855 bases This database may be copied and redistributed without permission on the condition that all the statements in this release note are reproduced in each copy. The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank, and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of Dec. 26, 2001. This unified database was made possible thanks to the international collaboration among the three data banks. All the entries have accordingly been annotated with the feature keys common to them. All the entries designated by the accession numbers with the prefixes "C", "D", "E", "AB", "AG", "AK", "AP", "AT", "AU", "AV", "BA" and "BB" have been collected and processed by DDBJ, and the rest have been prepared by GenBank and EMBL/EBI. There have been a number of genome projects going on worldwide. Among them human genome projects have probably been most productive and yielded a large number of ordinary sequences, huge amounts of ESTs and quantities of genome sequences. Thus, we have the human(HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. Note that the EST division also contains human sequences. The present release does not have the ORG division. Thus, if you are interested in human mitochondrial sequences, for example, you are now advised to refer to the HUM division. The HUM division in this release was recorded in 13 files each of which had 300 MB storage capacity. Incidentally, the BCT, INV, PLN, PAT, VRL and ROD divisions were recorded in 4, 4, 4, 3, 2, 2 files, respectively. This release also includes a division (PAT) for patent data. The patent data are those which the Japanese Patent Office (JPO), United States Patent and Trademark Office (USPTO), and the European Patent Office (EPO) collected and processed. The accession numbers of the patent data collected by the Japanese Patent Office start with the prefix "E", those collected and supplied by USPTO and GenBank respectively start with "I" and "AR", and those collected and supplied by EPO and EMBL/EBI respectively start with "A" and "AX". The entries with the prefixes "I","AR", "A","AX" and "E" were allocated to three files (ddbjpat1.seq _ ddbjpat3.seq) in the DDBJ format. Note also that unauthorized use of the patent data may cause legal issues for which we take no responsibility. In the present release, the SOURCE in the flat file was revisited and revised if necessary in accordance with the unified taxonomy database common to the three data banks. The number of ESTs has been increasing at an enormous rate and is expected to be growing even more rapidly in the future. Therefore, EST data were stored in 109 files each of which had the same storage capacity as the file of the HUM division. The present release includes the GSS division. GSS stands for the Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. This division was recorded in 35 files similarly to the HUM division. This release also includes the High Throughput Genomic Sequence (HTGS), which comes mainly from genome project teams which deal with a clone as a sequencing unit. HTGS in this release were recorded in 23 files similarly to the HUM division. The index files are not presented in this release except for ddbjacc.idx, ddbjgen.idx, ddbjjou.idx, and ddbjkey.idx. Instead, we have included a program by which to make the index files not presented in this release. For the use of the program, see the files, seq2indexes.doc, seq2indexes.c, and seq2indexes.h in this release. The present release contains amino acid sequences that were translated from the corresponding nucleotide sequences in our database. In the translation we paid much attention to the fact that some species or organella have a codon different from the universal one, and used the proper codon table. If you find an incorrect codon in a translated sequence, please let us know. The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence (see Table 1). It is expressed like AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. We terminated the RNA division. The RNA data were redistributed according to the category of the organism. Therefore, you will find a human RNA sequence, for example, in the HUM division. The present release includes a division, CON. The CON division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. The current number of the entries of this division is 9,595. The present release also includes, HTC (High Throughput cDNA). The definition of the HTC division is as follows. This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. This release is published by the following DDBJ staff. General administration T. Gojobori, Y. Fukuma, Y. Katsube, M. Maruyama, K. Okuda, J. Sugiyama, H. Tsutsui (hold), Y. Ueda, T. Umezawa, A. Watanabe Database construction Y. Tateno, S. Miyazaki, H. Aono, N. Asakawa, M. Ejima, M. Gojobori, A. Hasegawa, A. Hashizume, M. Hirahata, J. Mashima, N. Murakata, A. Okada, M. Okaneya, T. Okido, M. Suzuki, H. Tsutsui, Y. Yamamoto Database software development and management H. Sugawara, M. Ota, S. Miyazaki (hold), Y. Fujisawa, M. Fumoto, H. Hashimoto, T. Iizuka (hold), N. Ishizaka, K. Kaneda, T. Kato, Y. Kawanishi, T. Kubota, K. Mamiya, S. Misu, N. Nishimiya, T. Okayama, Y. Shigemoto, Y. Sugiyama, K. Suzuki, N. Takahashi, N. Tanaka, T. Takaki System management K. Nishikawa, K. Ikeo, N. Hoshi, T. Iizuka, A. Kusakabe, M. Nagura, F. Sugiyama, Y. Sugisaki, K. Yoshioka Editorial and public relations N. Saitou, K. Fukami-Kobayashi, H. Ichikawa, K. Ichikawa, T. Kawamoto, J. Kohira, S. Nagira, Y. Sueki Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Mishima 411-8540, Japan Phone: +81 559 81 6853 FAX: +81 559 81 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp/ (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp/ (for DDBJ sequence data submission system SAKURA) Acknowledgement: We are grateful to NCBI and EMBL/EBI for a firm friendship and an excellent collaboration with us. We also thank the Japanese Patent Office for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ Database Release History Release Date Entries Bases Comments 48 01/02 15,016,100 16,197,713,855 47 10/01 13,266,610 14,145,671,645 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------------------------------------------------------------ This release covers 18 categories of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct.*** Category for bacteria ddbjest.*** Category for EST (expressed sequence tag) ddbjhtc.*** Category for HTC (high throughput cDNA) ddbjhtg.*** Category for HTG (high throughput genomic sequence) ddbjhum.*** Category for human ddbjgss.*** Category for GSS (Genome Survey Sequence) ddbjinv.*** Category for invertebrates ddbjmam.*** Category for mammals other than primates and rodents ddbjpat.*** Category for patents ddbjphg.*** Category for phages ddbjpln.*** Category for plants ddbjpri.*** Category for primates other than human ddbjrod.*** Category for rodents ddbjsts.*** Category for STS (sequence tagged site) ddbjsyn.*** Category for synthetic DNAs ddbjuna.*** Category for unannotated sequences ddbjvrl.*** Category for viruses ddbjvrt.*** Category for vertebrates other than mammals ------------------------------------------------------------------------------ Each category then has the following nine files. Note that all the files except for ddbj***.seq are created by the user by use of seq2indexes as mentioned in the release note. ------------------------------------------------------------------------------ ddbj***.seq List of an entry in DDBJ format, see Table 1. ddbj***.acc List of the accession numbers, see Table 2 . ddbj***.aut List of the authors, see Table 3. ddbj***.dir List of the short directory in DDBJ style, see Table 4. ddbj***.idx List of indices, see Table 5. ddbj***.jou List of the journals, see Table 6. ddbj***.key List of the key words, see Table 7. ddbj***.org List of the species names, see Table 8. ddbj***.sdr List of the short directory in DDBJ style, see Table 9. ------------------------------------------------------------------------------ Table 1. Part of the contents in the file 'ddbjbct.seq'. This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA BCT 07-FEB-1999 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli (strain:W3110) cDNA to mRNA. ORGANISM Escherichia coli Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Miki Jishage, National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail:mjishage@lab.nig.ac.jp, Tel:0559-81-6742, Fax:0559-81-6746) REFERENCE 2 (bases 1 to 993) AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 (sites) AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 (sites) AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol Gen Genet 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /organism="Escherichia coli" /sequenced_mol="cDNA to mRNA" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK" /transl_table=11 mutation 75 /citation=[3] /replace="t" mutation 97 /citation=[3] /replace="t" mutation 99 /citation=[3] /replace="t" mutation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t 0 others ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ Table 2. Part of the contents in the file 'ddbjbct.acc'. The first column refers to the secondary accession number, second column to the locus name, and third to the primary accession number. The primary number may be the same as the secondary number. They are arranged in the ascending order of the secondary accession numbers. ------------------------------------------------------------------------------ D00001 -> ECOPBPAA X04516 D00002 -> ECOPYRH X04469 D00006 -> PNS981TET D00006 D00020 -> COLE2LYS D00020 D00021 -> COLE31YS D00021 D00038 -> BRLAM330 D00038 D00066 -> BAC139AC D00066 D00067 -> ECONANA M20207 D00069 -> ECOUVRD2 D00069 D00087 -> BACXYNAA D00087 ------------------------------------------------------------------------------ Table 3. Part of the contents in the file 'ddbjbct.aut'. For each author name given on the left to the arrow, the corresponding locus name and primary accession number are respectively listed on the right. They are arranged in the alphabetical order of the author names. ------------------------------------------------------------------------------ Aan,F. -> STYCRR X05210 Aan,F. -> STYENZI M76176 Aaronson,W. -> ECOKPSD M64977 Aaronson,W. -> ECONEUA J05023 Abad-Lapuebla,M.A. -> VIBTDHI D90238 Abdel-Mawgood,A.L. -> CYAPSBHA X16394 Abdel-Meguid,S.S. -> TRNGDRECM J01843 Abdelal,A. -> STYCARA M36540 Abdelal,A. -> STYCARAB X13200 Abdelal,A.H. -> PSENOSA M60717 ------------------------------------------------------------------------------ Table 4. Part of the short directory in DDBJ style in the file 'ddbjbct.dir'. For each locus name given in the first column, the corresponding primary accession number, molecular type, number of nucleotide pairs, and description for the locus are respectively listed. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ ABCAARAA M34830 ds-DNA 1624 A.aceti acetic acid resistance protein (aarA) gene, complete cds. ABCADHCC D00635 ds-DNA 4230 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. ABCALDH D00521 ds-DNA 2683 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. ABCBCSAA M37202 ds-DNA 9540 A.xylinum bcs B, bcs C and bcs D genes, complete cds and bcs A gene, partial cds. ABCCELA M76548 ds-DNA 1165 Acetobacter xylinum UDP pyrophosphorylase (celA) gene, complete cds. ABCCELSYN X54676 ds-DNA 5363 A. xylinum gene for cellulose biosynthesis ABCIS1380 D10043 ds-DNA 1665 A.pasteurianus insertion sequence IS1380. ACAADH1 D90004 ds-DNA 2467 Acetobacter aceti(K6033) alcohol dehydrogenase subunit gene(adh1). ACCAAC2 M62833 ds-DNA 1123 Acinetobacter baumannii aminoglycoside acetyltr ansferase (aac2) gene, complete cds. ACCACEAA M62822 ds-DNA 1874 A.baumannii chloramphenicol acetyltransferase (cat) gene, complete cds. ------------------------------------------------------------------------------ Table 5. Part of the contents in the file 'ddbjbct.idx'. The first column refers to the locus name, second column to the starting site of the locus in byte, and third to its ending site in byte. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ %***************************** #ABCAARAA 0 3211 #ABCADHCC 3212 10608 #ABCALDH 10609 15864 #ABCBCSAA 15865 29583 #ABCCELA 29584 32289 #ABCCELSYN 32290 40960 #ABCIS1380 40961 44711 #ACAADH1 44712 49357 #ACCAAC2 49358 52395 ------------------------------------------------------------------------------ Table 6. Part of the contents in the file 'ddbjbct.jou'. This gives information on the journal in which sequence data were published. ------------------------------------------------------------------------------ (in) Chaloupka,J. and Krumphanzl,V. (Eds.); Extracellular Enzymes of Microorganisms: 129-137, Plenum Press, New York (1987) -> BACAMYABS M57457 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16S M55011 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SA M55006 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SB M55008 (in) Hoch,J.A. and Setlow,P. (Eds.); Molecular Biology of Microbial Differentiation: 85-94, American Society for Microbiology, Washington, DC (1985) -> BACSPOII M57606 (in) Holmgren,A. (Ed.); Thioredoxin and Glutaredoxin Systems: Structure and Function: 11-19, Unknown name, Unknown city (1986) -> ECOTRXA1 M54881 (in) Kjeldgaard,N.C. and Maaloe,O. (Eds.); Control of ribosome synthesis: 138-143, Academic Press, New York (1976) -> ECOLAC J01636 (in) Losick,R. and Chamberlin,M. (Eds.); RNA polymerase: 455-472, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1976) -> ECOTGY1 K01197 (in) Sikes,C.S. and Wheeler,A.P. (Eds.); Surface reactive peptides and polymers. Discovery and commercialization.: 186-200, American Chemical Society, Washington, D.C. (1991) -> ECOTGP J01714 (in) Sund,H. and Blauer,G. (Eds.); Protein-Ligand Interactions: 193-207, Walter de Gruyter, New York (1975) -> ECOLAC J01636 (in) Wu,R. and Grossman,L. (Eds.); Methods in Enzymology, Recombinant DNA, part E: In press, Academic Press, New York, N.Y. (1986) -> PLMCG M11320 Acta Microbiol. Pol. 35, 175-190 (1986) -> ECOTGG1 M54893 Actinomycetologica 5, 14-17 (1991) -> STMARGG D00799 Adv. Biophys. 21, 115-133 (1986) -> R10REP M26840 Adv. Biophys. 21, 175-192 (1986) -> ECONUSAA M26839 Adv. Enzyme Regul. 21, 225-237 (1983) -> ECOPURFA M26893 Adv. Exp. Med. Biol. 195, 239-246 (1986) -> ECOAPT M14040 Agric. Biol. Chem. 50, 2155-2158 (1986) -> ECONANA M20207 Agric. Biol. Chem. 50, 2771-2778 (1986) -> BRLAM330 D00038 Agric. Biol. Chem. 51, 2019-2022 (1987) -> BACCGT D00129 Agric. Biol. Chem. 51, 2641-2648 (1987) -> STRSAGP D00219 Agric. Biol. Chem. 51, 2807-2809 (1987) -> BACPGECR M35503 Agric. Biol. Chem. 51, 3133-3135 (1987) -> BACXYLAP D00312 Agric. Biol. Chem. 51, 455-463 (1987) -> BACHDCRY D00117 Agric. Biol. Chem. 51, 953-955 (1987) -> BACXYNAA D00087 Agric. Biol. Chem. 52, 1565-1573 (1988) -> BACIP135 D00348 Agric. Biol. Chem. 52, 1785-1789 (1988) -> BACTMR D00343 Agric. Biol. Chem. 52, 2243-2246 (1988) -> PSEGI D00342 Agric. Biol. Chem. 52, 399-406 (1988) -> BACAMYEB M35517 Agric. Biol. Chem. 52, 479-487 (1988) -> ECAPALI D00217 ------------------------------------------------------------------------------ Table 7. Part of the contents in the file 'ddbjbct.key'. For the locus and accession number respectively given on the right to the arrow, the corresponding key words are listed on the left. ------------------------------------------------------------------------------ A.aceti acetic acid resistance protein (aarA) gene, complete cds. -> ABCAARAA M34830 acetic acid resistance protein. -> ABCAARAA M34830 Cloning of genes responsible for acetic acid resistance in acetobacter aceti -> ABCAARAA M34830 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. -> ABCADHCC D00635 alcohol dehydrogenase; cytochrome c. -> ABCADHCC D00635 Cloning and sequencing of the gene cluster encoding two subunits of membrane- bound alcohol dehydrogenase from Acetobacter polyoxogenes -> ABCADHCC D00635 These data kindly submitted in computer readable form by: Toshimi Tamaki Nakano Central Biochemical Institute 2-6 Nakamura-cho Handa-shi, Aichi-ken 475 Japan Phone: 0569-21-3331 Fax: 0569-23-8486 -> ABCADHCC D00635 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. -> ABCALDH D00521 aldehyde dehydrogenase gene; ethanol oxidation; membrane-bound enzyme. -> ABCALDH D00521 Nucleotide sequence of the membrane-bound aldehyde dehydrogenase gene from Acetobacter polyoxogenes -> ABCALDH D00521 ------------------------------------------------------------------------------ Table 8. Part of the contents in the file 'ddbjbct.org'. For the locus and accession number respectively given on the right to the arrow, the corresponding taxonomic names are listed on the left. They are arranged in the alphabetical order of the species names. ------------------------------------------------------------------------------ A. nidulans 6301 DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRUBPS X00019 A. nidulans DNA, clone pAN4. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGGX X00343 A. nidulans DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGG X00512 A. polyoxogenes genomic DNA. Acetobacter polyoxogenes Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. - > ABCADHCC D00635 A. quadruplicatum (strain PR-6) DNA, clone pAQPR1. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUPCAB K02660 A. quadruplicatum (strain PR6) DNA. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUCPCAB K02659 A. vinelandii DNA. Azotobacter vinelandii Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> AVINIFUSV M17349 A.aceti (strain 10-8) DNA, clone pAR1611. Acetobacter aceti Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> ABCAARAA M34830 A.actinomycetemcomitans (strain JP2) DNA, clone lambda-OP8. Actinobacillus actinomycetemcomitans Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Pasteurellaceae. -> ACNLKTXN M27399 A.anitratum DNA, clone pLJD1. Acinetobacter anitratum Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Neisseriaceae. -> ACCCITSYN M33037 ------------------------------------------------------------------------------ Table 9. Part of the short directory file in DDBJ style in the file 'ddbjbct.sdr'. The short directory file contains brief descriptions of all of the sequence entries contained in the DDBJ style. ------------------------------------------------------------------------------ ABCAARAA A.aceti acetic acid resistance protein (aarA) gene, complete 1624bp ABCADHCC A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and 4230bp ABCALDH A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, 2683bp ABCBCSABCD A.xylinum bcs A, B, C and D genes, complete cds's. 9540bp ABCCELA Acetobacter xylinum UDP pyrophosphorylase (celA) gene, 1165bp ABCCELSYN A. xylinum gene for cellulose biosynthesis 5363bp ABCIS1380 A.pasteurianus insertion sequence IS1380. 1665bp ACAADH1 Acetobacter aceti(K6033) alcohol dehydrogenase subunit 2467bp ACCAAC2 Acinetobacter baumannii aminoglycoside acetyltransferase 1123bp ACCACEAA A.baumannii chloramphenicol acetyltransferase (cat) gene, 1874bp ACCAPHA6 Acinetobacter baumannii aphA-6 gene. 1170bp ACCBENABCA A.calcoaceticus BenA, BenB, BenC, BenD, and BenE proteins 15922bp ACCCAT Acinetobacter calcoaceticus cat operon. 15922bp ACCCATAM A.calcoaceticus catA and catM genes, encoding catechol 1, 5537bp ACCCHMO Acinetobacter sp. cyclohexanone monooxygenase gene, complete 2128bp ACCCITSYN A.anitratum citrate synthase gene, complete cds. 1895bp ------------------------------------------------------------------------------ In addition to the 9 tables the four following index files are included in this release. These files were prepared irrespective of the 14 categories of taxonomic divisions. Accession number index file Keyword phrase index file Journal citation index file Gene name index file A brief description is given for each file in the following. Table 10. Part of the accession number index file in the 'ddbjacc.idx'. The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00100 PSEASPAA BCT D00100 D00101 RABNP450R MAM D00101 D00102 HUMLTX HUM D00102 D00103 AFARRN5SA BCT D00103 AFRRN5SA BCT X05517 D00104 AFARRN5SB BCT D00104 AFRRN5SB BCT X05518 D00105 AFARRN5S BCT D00105 ASRRN5S BCT X05524 D00106 ACH5SRR BCT D00106 AXRRN5S BCT X05522 AXRRN5SA BCT X05523 D00107 ACH5SRRX BCT D00107 ACRRN5S BCT X05521 ------------------------------------------------------------------------------ Table 11. Part of the keyword phrase index file in the 'ddbjkey.idx'. Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ A CHANNEL DROCHA INV M17155 A COMPONENT SQLCVEA VRL M38183 A LOCUS GORGOGOA3 PRI X54375 GORGOGOA4 PRI X54376 A LOCUS ALLELE GORA0101 PRI X60258 GORA0201 PRI X60259 GORA0401 PRI X60257 GORA0501 PRI X60256 A MULTI-GENE FAMILY RICGLUTE PLN D00584 A PROTEIN MS2AAR PHG M25187 ST1APCS PHG M25396 A SEQUENCE HS5TOA30 VRL D00148 HS5TOA31 VRL D00147 ------------------------------------------------------------------------------ Table 12. Part of the author name index file in 'ddbjaut.idx'. The author name index file lists all of the author names that appear in the citations. ------------------------------------------------------------------------------ ABE,A. HUMMHDRBWE PRI M27509 HUMMHDRBWF PRI M27510 HUMMHDRBWG PRI M27511 YSCGAL11A PLN M22481 ABE,C. S85445 BCT S85445 ABE,E. M23442 UNA M23442 ABE,H. CHKADF VRT M55660 CHKCOF VRT M55659 ABE,K. CHPCLAC PRI D11383 CHPIMRF PRI D11384 CUGCUR09 PLN X64110 CUGCUR37 PLN X64111 HPCCEXPA VRL M55970 HPCCPEP1 VRL D10687 HPCCPEP2 VRL D10688 HPCHABC82 VRL X51587 HPCNS2APA VRL M55972 HPCNS2PA VRL M55971 HPCNS2PB VRL M55973 HPCNS5PA VRL M55974 MUSKE2 ROD M65255 MUSKE2A ROD M65256 MZECYS PLN D10622 RICCPI PLN J03469 RICGLUTE PLN D00584 RICLNOCI PLN J05595 RICOCS PLN M29259 RICORYII PLN X57658 RICOZA PLN D90406 RICOZB PLN D90407 RICOZC PLN D90408 S54524 PLN S54524 S54526 PLN S54526 S54530 PLN S54530 S73960 ROD S73960 ------------------------------------------------------------------------------ Table 13. Part of the journal citation index file in 'ddbjjou.idx'. The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ ACTA BIOCHIM. BIOPHYS. SIN. 23, 246-253 (1992) HUMPLASINS HUM M98056 ACTA BIOCHIM. BIOPHYS. SIN. 28, 233-239(1996) TKTII PLN X82230 ACTA BIOCHIM. POL. 24, 301-318 (1977) LUPTRFJ PLN K00345 LUPTRFN PLN K00346 ACTA BIOCHIM. POL. 26, 369-381(1979) HVTRNPHE PLN X02683 ACTA BIOCHIM. POL. 29, 143-149 (1982) EMEMTA PLN M32572 EMEMTB PLN M32573 EMEMTC PLN M32574 EMEMTD PLN M32575 EMEMTE PLN M32576 ACTA BIOCHIM. POL. 34, 21-27 (1987) LUPNOSP PLN M32571 ------------------------------------------------------------------------------ Table 14. Part of the gene name index file in 'ddbjgen.idx'. This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ AACC8 STMAACC8 BCT M55426 AACC9 MPUAACC9 BCT M55427 AACT HUMA1ACM PRI K01500 HUMA1ACMA PRI X00947 HUMA1ACMB PRI M18035 HUMAACT1 PRI M18906 HUMAACT2 PRI M22533 HUMAACTA PRI J05176 AAD INTINTORF BCT L06418 LMOMO229D BCT X17478 AAD A1 ENTAAC3VI BCT M88012 AAD9 ENEAAD9A BCT M69221 AADA LMOMO229A BCT X17479 S52249 BCT S52249 SYNAADA SYN M60473 TRNTAAB BCT M55547 TRNTN21CAS BCT M86913 ------------------------------------------------------------------------------ The files in this release are arranged in the following order with non- labeled format. Release note ddbjrel.txt 1105 records Category for bacteria1, 23012 entries, 123784091 bases ddbjbct1.seq, 4767761 records Category for bacteria2, 58267 entries, 110061370 bases ddbjbct2.seq, 5061138 records Category for bacteria3, 33901 entries, 125834500 bases ddbjbct3.seq, 4827565 records Category for bacteria4, 11175 entries, 25811759 bases ddbjbct4.seq, 1074065 records Category for EST1 (expressed sequence tag), 93250 entries, 34643977 bases ddbjest1.seq 5514098 records Category for EST2 (expressed sequence tag), 96176 entries, 39209269 bases ddbjest2.seq 5559955 records Category for EST3 (expressed sequence tag), 97522 entries, 37834072 bases ddbjest3.seq 5555456 records Category for EST4 (expressed sequence tag), 90865 entries, 27870456 bases ddbjest4.seq 5479467 records Category for EST5 (expressed sequence tag), 97165 entries, 38224927 bases ddbjest5.seq 5574107 records Category for EST6 (expressed sequence tag), 101505 entries, 40228749 bases ddbjest6.seq 5623565 records Category for EST7 (expressed sequence tag), 100396 entries, 38840037 bases ddbjest7.seq 5585768 records Category for EST8 (expressed sequence tag), 99329 entries, 38408203 bases ddbjest8.seq 5559788 records Category for EST9 (expressed sequence tag), 100944 entries, 40002137 bases ddbjest9.seq 5614192 records Category for EST10 (expressed sequence tag), 101609 entries, 39773341 bases ddbjest10.seq 5586991 records Category for EST11 (expressed sequence tag), 99178 entries, 41120449 bases ddbjest11.seq 5546355 records Category for EST12 (expressed sequence tag), 101502 entries, 44212034 bases ddbjest12.seq 5592007 records Category for EST13 (expressed sequence tag), 107853 entries, 43202758 bases ddbjest13.seq 5627833 records Category for EST14 (expressed sequence tag), 103247 entries, 41868900 bases ddbjest14.seq 5581965 records Category for EST15 (expressed sequence tag), 99334 entries, 41663438 bases ddbjest15.seq 5544616 records Category for EST16 (expressed sequence tag), 95111 entries, 42090782 bases ddbjest16.seq 5529720 records Category for EST17 (expressed sequence tag), 101189 entries, 41880461 bases ddbjest17.seq 5609945 records Category for EST18 (expressed sequence tag), 99354 entries, 43670484 bases ddbjest18.seq 5584522 records Category for EST19 (expressed sequence tag), 95325 entries, 40107299 bases ddbjest19.seq 5542507 records Category for EST20 (expressed sequence tag), 100001 entries, 42193444 bases ddbjest20.seq 5568823 records Category for EST21 (expressed sequence tag), 101227 entries, 47358140 bases ddbjest21.seq 5370575 records Category for EST22 (expressed sequence tag), 105659 entries, 78457811 bases ddbjest22.seq 5326732 records Category for EST23 (expressed sequence tag), 128951 entries, 57808962 bases ddbjest23.seq 5765829 records Category for EST24 (expressed sequence tag), 113288 entries, 59816540 bases ddbjest24.seq 5659766 records Category for EST25 (expressed sequence tag), 89711 entries, 24098904 bases ddbjest25.seq 5538854 records Category for EST26 (expressed sequence tag), 97497 entries, 27609611 bases ddbjest26.seq 5594126 records Category for EST27 (expressed sequence tag), 61830 entries, 17521207 bases ddbjest27.seq 5216220 records Category for EST28 (expressed sequence tag), 59098 entries, 16306861 bases ddbjest28.seq 5204699 records Category for EST29 (expressed sequence tag), 58900 entries, 15562269 bases ddbjest29.seq 5204299 records Category for EST30 (expressed sequence tag), 119860 entries, 53077348 bases ddbjest30.seq 5755700 records Category for EST31 (expressed sequence tag), 112833 entries, 54952997 bases ddbjest31.seq 5548807 records Category for EST32 (expressed sequence tag), 116041 entries, 61020220 bases ddbjest32.seq 5544755 records Category for EST33 (expressed sequence tag), 104111 entries, 47303808 bases ddbjest33.seq 5581152 records Category for EST34 (expressed sequence tag), 90225 entries, 39491845 bases ddbjest34.seq 5433295 records Category for EST35 (expressed sequence tag), 96038 entries, 41531223 bases ddbjest35.seq 5495098 records Category for EST36 (expressed sequence tag), 99167 entries, 40871664 bases ddbjest36.seq 5603584 records Category for EST37 (expressed sequence tag), 99828 entries, 39888187 bases ddbjest37.seq 5616269 records Category for EST38 (expressed sequence tag), 85155 entries, 37243616 bases ddbjest38.seq 5446122 records Category for EST39 (expressed sequence tag), 96153 entries, 42518826 bases ddbjest39.seq 5560426 records Category for EST40 (expressed sequence tag), 100901 entries, 45280303 bases ddbjest40.seq 5587961 records Category for EST41 (expressed sequence tag), 99168 entries, 36820174 bases ddbjest41.seq 5624908 records Category for EST42 (expressed sequence tag), 111812 entries, 49308903 bases ddbjest42.seq 5741789 records Category for EST43 (expressed sequence tag), 64981 entries, 19895278 bases ddbjest43.seq 5200691 records Category for EST44 (expressed sequence tag), 58494 entries, 16897232 bases ddbjest44.seq 5125065 records Category for EST45 (expressed sequence tag), 58771 entries, 18310313 bases ddbjest45.seq 5115959 records Category for EST46 (expressed sequence tag), 58852 entries, 18080912 bases ddbjest46.seq 5117485 records Category for EST47 (expressed sequence tag), 58681 entries, 18624715 bases ddbjest47.seq 5097292 records Category for EST48 (expressed sequence tag), 58820 entries, 17493896 bases ddbjest48.seq 5141777 records Category for EST49 (expressed sequence tag), 59023 entries, 18230714 bases ddbjest49.seq 5109679 records Category for EST50 (expressed sequence tag), 60295 entries, 17825269 bases ddbjest50.seq 5109794 records Category for EST51 (expressed sequence tag), 59980 entries, 18788563 bases ddbjest51.seq 5090320 records Category for EST52 (expressed sequence tag), 60424 entries, 18141497 bases ddbjest52.seq 5173185 records Category for EST53 (expressed sequence tag), 57911 entries, 28042973 bases ddbjest53.seq 5169361 records Category for EST54 (expressed sequence tag), 54196 entries, 28390226 bases ddbjest54.seq 5076302 records Category for EST55 (expressed sequence tag), 53439 entries, 21929504 bases ddbjest55.seq 5064241 records Category for EST56 (expressed sequence tag), 52999 entries, 23526553 bases ddbjest56.seq 5037957 records Category for EST57 (expressed sequence tag), 53346 entries, 22728873 bases ddbjest57.seq 5054605 records Category for EST58 (expressed sequence tag), 86738 entries, 37554261 bases ddbjest58.seq 5424076 records Category for EST59 (expressed sequence tag), 97878 entries, 36512839 bases ddbjest59.seq 5665262 records Category for EST60 (expressed sequence tag), 97503 entries, 49498891 bases ddbjest60.seq 5508372 records Category for EST61 (expressed sequence tag), 102838 entries, 56616520 bases ddbjest61.seq 5567121 records Category for EST62 (expressed sequence tag), 101384 entries, 52922960 bases ddbjest62.seq 5536717 records Category for EST63 (expressed sequence tag), 98694 entries, 53837083 bases ddbjest63.seq 5514150 records Category for EST64 (expressed sequence tag), 93961 entries, 46965159 bases ddbjest64.seq 5478276 records Category for EST65 (expressed sequence tag), 99982 entries, 50217894 bases ddbjest65.seq 5586561 records Category for EST66 (expressed sequence tag), 94505 entries, 49454171 bases ddbjest66.seq 5478496 records Category for EST67 (expressed sequence tag), 95211 entries, 59572284 bases ddbjest67.seq 5477725 records Category for EST68 (expressed sequence tag), 93527 entries, 47071540 bases ddbjest68.seq 5477236 records Category for EST69 (expressed sequence tag), 96077 entries, 55735822 bases ddbjest69.seq 5492907 records Category for EST70 (expressed sequence tag), 94456 entries, 57799083 bases ddbjest70.seq 5439189 records Category for EST71 (expressed sequence tag), 95827 entries, 55549063 bases ddbjest71.seq 5479766 records Category for EST72 (expressed sequence tag), 94007 entries, 39521702 bases ddbjest72.seq 5582690 records Category for EST73 (expressed sequence tag), 87349 entries, 46704456 bases ddbjest73.seq 5369383 records Category for EST74 (expressed sequence tag), 86704 entries, 47412621 bases ddbjest74.seq 5410105 records Category for EST75 (expressed sequence tag), 94835 entries, 57662615 bases ddbjest75.seq 5474873 records Category for EST76 (expressed sequence tag), 99641 entries, 42323590 bases ddbjest76.seq 5610834 records Category for EST77 (expressed sequence tag), 98831 entries, 35287142 bases ddbjest77.seq 5615829 records Category for EST78 (expressed sequence tag), 97329 entries, 49192315 bases ddbjest78.seq 5530365 records Category for EST79 (expressed sequence tag), 90863 entries, 52268241 bases ddbjest79.seq 5384186 records Category for EST80 (expressed sequence tag), 106728 entries, 57333965 bases ddbjest80.seq 5554192 records Category for EST81 (expressed sequence tag), 96064 entries, 60861332 bases ddbjest81.seq 5458569 records Category for EST82 (expressed sequence tag), 89802 entries, 55388450 bases ddbjest82.seq 5406767 records Category for EST83 (expressed sequence tag), 94700 entries, 63441639 bases ddbjest83.seq 5417144 records Category for EST84 (expressed sequence tag), 95183 entries, 58018496 bases ddbjest84.seq 5413471 records Category for EST85 (expressed sequence tag), 100207 entries, 61033009 bases ddbjest85.seq 5596985 records Category for EST86 (expressed sequence tag), 96622 entries, 63307283 bases ddbjest86.seq 5420405 records Category for EST87 (expressed sequence tag), 96682 entries, 61242312 bases ddbjest87.seq 5465140 records Category for EST88 (expressed sequence tag), 102433 entries, 47892764 bases ddbjest88.seq 5650843 records Category for EST89 (expressed sequence tag), 102794 entries, 50827127 bases ddbjest89.seq 5621289 records Category for EST90 (expressed sequence tag), 97710 entries, 57445035 bases ddbjest90.seq 5510259 records Category for EST91 (expressed sequence tag), 85649 entries, 45792862 bases ddbjest91.seq 5443958 records Category for EST92 (expressed sequence tag), 95772 entries, 52399582 bases ddbjest92.seq 5525952 records Category for EST93 (expressed sequence tag), 87521 entries, 46498776 bases ddbjest93.seq 5404514 records Category for EST94 (expressed sequence tag), 93538 entries, 57584848 bases ddbjest94.seq 5473532 records Category for EST95 (expressed sequence tag), 93873 entries, 58630040 bases ddbjest95.seq 5469262 records Category for EST96 (expressed sequence tag), 88458 entries, 50431732 bases ddbjest96.seq 5339899 records Category for EST97 (expressed sequence tag), 98526 entries, 57931649 bases ddbjest97.seq 5516950 records Category for EST98 (expressed sequence tag), 79898 entries, 48420462 bases ddbjest98.seq 5261564 records Category for EST99 (expressed sequence tag), 112375 entries, 60402189 bases ddbjest99.seq 5611890 records Category for EST100 (expressed sequence tag), 91688 entries, 53020184 bases ddbjest100.seq 5443041 records Category for EST101 (expressed sequence tag), 87453 entries, 40833546 bases ddbjest101.seq 5410252 records Category for EST102 (expressed sequence tag), 80493 entries, 41035547 bases ddbjest102.seq 5257647 records Category for EST103 (expressed sequence tag), 125604 entries, 47660041 bases ddbjest103.seq 5784752 records Category for EST104 (expressed sequence tag), 113044 entries, 37190046 bases ddbjest104.seq 5779217 records Category for EST105 (expressed sequence tag), 94125 entries, 34771904 bases ddbjest105.seq 5553665 records Category for EST106 (expressed sequence tag), 96589 entries, 34299551 bases ddbjest106.seq 5533272 records Category for EST107 (expressed sequence tag), 102930 entries, 35611876 bases ddbjest107.seq 5687241 records Category for EST108 (expressed sequence tag), 95228 entries, 36931093 bases ddbjest108.seq 5530990 records Category for EST109 (expressed sequence tag), 78062 entries, 29777252 bases ddbjest109.seq 4501814 records Category for GSS1 (genome survey sequence), 102503 entries, 76816857 bases ddbjgss1.seq 5651689 records Category for GSS2 (genome survey sequence), 103003 entries, 71771762 bases ddbjgss2.seq 5641364 records Category for GSS3 (genome survey sequence), 104454 entries, 78564863 bases ddbjgss3.seq 5230585 records Category for GSS4 (genome survey sequence), 85033 entries, 71053656 bases ddbjgss4.seq 5222612 records Category for GSS5 (genome survey sequence), 82999 entries, 75060242 bases ddbjgss5.seq 5193813 records Category for GSS6 (genome survey sequence), 80473 entries, 64502744 bases ddbjgss6.seq 5130883 records Category for GSS7 (genome survey sequence), 117797 entries, 53395422 bases ddbjgss7.seq 5783084 records Category for GSS8 (genome survey sequence), 119938 entries, 52566210 bases ddbjgss8.seq 6005068 records Category for GSS9 (genome survey sequence), 112353 entries, 54901069 bases ddbjgss9.seq 5897047 records Category for GSS10 (genome survey sequence), 104953 entries, 55175159 bases ddbjgss10.seq 5822601 records Category for GSS11 (genome survey sequence), 103539 entries, 51630480 bases ddbjgss11.seq 5793451 records Category for GSS12 (genome survey sequence), 101843 entries, 51952193 bases ddbjgss12.seq 5762076 records Category for GSS13 (genome survey sequence), 97551 entries, 49109738 bases ddbjgss13.seq 5663316 records Category for GSS14 (genome survey sequence), 99987 entries, 56293300 bases ddbjgss14.seq 5674617 records Category for GSS15 (genome survey sequence), 92405 entries, 49775511 bases ddbjgss15.seq 5547984 records Category for GSS16 (genome survey sequence), 97660 entries, 49094206 bases ddbjgss16.seq 5650297 records Category for GSS17 (genome survey sequence), 94882 entries, 42744469 bases ddbjgss17.seq 5664485 records Category for GSS18 (genome survey sequence), 98843 entries, 52465287 bases ddbjgss18.seq 5677595 records Category for GSS19 (genome survey sequence), 94886 entries, 49998133 bases ddbjgss19.seq 5648059 records Category for GSS20 (genome survey sequence), 79062 entries, 38367039 bases ddbjgss20.seq 5403756 records Category for GSS21 (genome survey sequence), 75726 entries, 37102764 bases ddbjgss21.seq 5350335 records Category for GSS22 (genome survey sequence), 79002 entries, 34620584 bases ddbjgss22.seq 5412786 records Category for GSS23 (genome survey sequence), 84736 entries, 49553207 bases ddbjgss23.seq 5397690 records Category for GSS24 (genome survey sequence), 77643 entries, 43527600 bases ddbjgss24.seq 5356970 records Category for GSS25 (genome survey sequence), 93521 entries, 45926395 bases ddbjgss25.seq 5648003 records Category for GSS26 (genome survey sequence), 77289 entries, 33017776 bases ddbjgss26.seq 5379927 records Category for GSS27 (genome survey sequence), 92752 entries, 44226133 bases ddbjgss27.seq 5604846 records Category for GSS28 (genome survey sequence), 82295 entries, 44353092 bases ddbjgss28.seq 5433956 records Category for GSS29 (genome survey sequence), 99360 entries, 53916998 bases ddbjgss29.seq 5788372 records Category for GSS30 (genome survey sequence), 94502 entries, 57661152 bases ddbjgss30.seq 5587435 records Category for GSS31 (genome survey sequence), 104479 entries, 54501286 bases ddbjgss31.seq 5886657 records Category for GSS32 (genome survey sequence), 105627 entries, 57671841 bases ddbjgss32.seq 5827715 records Category for GSS33 (genome survey sequence), 123918 entries, 82329261 bases ddbjgss33.seq 6010539 records Category for GSS34 (genome survey sequence), 122631 entries, 68355991 bases ddbjgss34.seq 6089608 records Category for GSS35 (genome survey sequence), 35799 entries, 15685791 bases ddbjgss35.seq 1771199 records Category for HTC (high throughput cDNA), 19268 entries, 23607770 bases ddbjhtc.seq 2401445 records Category for HTG1 (high throughput genomic sequence), 1529 entries, 228996894 bases ddbjhtg1.seq 3987489 records Category for HTG2 (high throughput genomic sequence), 1994 entries, 226856490 bases ddbjhtg2.seq 4004605 records Category for HTG3 (high throughput genomic sequence), 2923 entries, 224716352 bases ddbjhtg3.seq 4023448 records Category for HTG4 (high throughput genomic sequence), 3387 entries, 228059532 bases ddbjhtg4.seq 4010869 records Category for HTG5 (high throughput genomic sequence), 1497 entries, 226678550 bases ddbjhtg5.seq 4004360 records Category for HTG6 (high throughput genomic sequence), 1549 entries, 225286509 bases ddbjhtg6.seq 4014471 records Category for HTG7 (high throughput genomic sequence), 1458 entries, 226656424 bases ddbjhtg7.seq 4006782 records Category for HTG8 (high throughput genomic sequence), 22977 entries, 191772379 bases ddbjhtg8.seq 4318803 records Category for HTG9 (high throughput genomic sequence), 17547 entries, 200909697 bases ddbjhtg9.seq 4238613 records Category for HTG10 (high throughput genomic sequence), 4714 entries, 222298625 bases ddbjhtg10.seq 4043690 records Category for HTG11 (high throughput genomic sequence), 9176 entries, 215696483 bases ddbjhtg11.seq 4106499 records Category for HTG12 (high throughput genomic sequence), 5828 entries, 218615144 bases ddbjhtg12.seq 4071433 records Category for HTG13 (high throughput genomic sequence), 1652 entries, 227005592 bases ddbjhtg13.seq 3998638 records Category for HTG14 (high throughput genomic sequence), 1482 entries, 227444622 bases ddbjhtg14.seq 3988608 records Category for HTG15 (high throughput genomic sequence), 1673 entries, 220382651 bases ddbjhtg15.seq 4012509 records Category for HTG16 (high throughput genomic sequence), 1650 entries, 223270780 bases ddbjhtg16.seq 4002999 records Category for HTG17 (high throughput genomic sequence), 1612 entries, 224379937 bases ddbjhtg17.seq 4000447 records Category for HTG18 (high throughput genomic sequence), 3176 entries, 206188522 bases ddbjhtg18.seq 4125706 records Category for HTG19 (high throughput genomic sequence), 2198 entries, 218579887 bases ddbjhtg19.seq 4043683 records Category for HTG20 (high throughput genomic sequence), 1487 entries, 228022503 bases ddbjhtg20.seq 4002146 records Category for HTG21 (high throughput genomic sequence), 1259 entries, 229856121 bases ddbjhtg21.seq 3982880 records Category for HTG22 (high throughput genomic sequence), 1334 entries, 230607531 bases ddbjhtg22.seq 3979138 records Category for HTG23 (high throughput genomic sequence), 1529 entries, 220788441 bases ddbjhtg23.seq 3801176 records Category for human1, 54696 entries, 141491609 bases ddbjhum1.seq 4783143 records Category for human2, 3533 entries, 202440930 bases ddbjhum2.seq 4175473 records Category for human3, 2976 entries, 212585145 bases ddbjhum3.seq 4101717 records Category for human4, 2370 entries, 215386082 bases ddbjhum4.seq 4078085 records Category for human5, 2572 entries, 220311240 bases ddbjhum5.seq 4064896 records Category for human6, 39850 entries, 164867828 bases ddbjhum6.seq 4722659 records Category for human7, 2117 entries, 198794905 bases ddbjhum7.seq 4076287 records Category for human8, 1539 entries, 214368110 bases ddbjhum8.seq 4180900 records Category for human9, 1493 entries, 215247395 bases ddbjhum9.seq 4181341 records Category for human10, 1457 entries, 218660093 bases ddbjhum10.seq 4134870 records Category for human11, 1556 entries, 209934610 bases ddbjhum11.seq 4110615 records Category for human12, 29260 entries, 168818886 bases ddbjhum12.seq 4347477 records Category for human13, 57395 entries, 103151026 bases ddbjhum13.seq 4515484 records Category for invertebrates1, 8076 entries, 214460461 bases ddbjinv1.seq 4096742 records Category for invertebrates2, 34765 entries, 159599323 bases ddbjinv2.seq 4637770 records Category for invertebrates3, 61136 entries, 119700693 bases ddbjinv3.seq 5021414 records Category for invertebrates4, 6436 entries, 43718223 bases ddbjinv4.seq 1206290 records Category for mammals, 36057 entries, 36408874 bases ddbjmam.seq 2091316 records Category for patents1, 233202 entries, 97830315 bases ddbjpat1.seq 6399326 records Category for patents2, 192734 entries, 94600893 bases ddbjpat2.seq 5968030 records Category for patents3, 100212 entries, 34212537 bases ddbjpat3.seq 2985259 records Category for phages, 1805 entries, 5786005 bases ddbjphg.seq 250900 records Category for plants1, 36581 entries, 154730268 bases ddbjpln1.seq 4649441 records Category for plants2, 82212 entries, 102138936 bases ddbjpln2.seq 5289159 records Category for plants3, 40700 entries, 142702270 bases ddbjpln3.seq 4760457 records Category for plants4, 30263 entries, 57843726 bases ddbjpln4.seq 2448218 records Category for primates, 13475 entries, 18838774 bases ddbjpri.seq 917237 records Category for rodents1, 43379 entries, 153070401 bases ddbjrod1.seq 4774929 records Category for rodents2, 30660 entries, 34960716 bases ddbjrod2.seq 1911429 records Category for STS (sequence tagged site), 113044 entries, 44624168 bases ddbjsts.seq 6703290 records Category for synthetic DNAs, 6519 entries, 12267661 bases ddbjsyn.seq 509320 records Category for unannotated sequences, 562 entries, 326124 bases ddbjuna.seq 26153 records Category for viruses1, 90734 entries, 75596400 bases ddbjvrl.seq 5602468 records Category for viruses2, 48053 entries, 47475307 bases ddbjvr2.seq 2980987 records Category for vertebrates, 65572 entries, 67410556 bases ddbjvrt.seq 3897044 records Accession number index file ddbjacc.idx 15047676 records Keyword phrase index file ddbjkey.idx 5295349 records Journal citation index file ddbjjou.idx 8626370 records Gene name index file ddbjgen.idx 839265 records