DNA Data Bank of Japan DNA Database Release 49, Apr. 2002, including 16,503,157 entries, 18,579,627,226 bases This database may be copied and redistributed without permission on the condition that all the statements in this release note are reproduced in each copy. The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank, and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of Mar. 27, 2002. This unified database was made possible thanks to the international collaboration among the three data banks. All the entries have accordingly been annotated with the feature keys common to them. All the entries designated by the accession numbers with the prefixes "C", "D", "E", "AB", "AG", "AK", "AP", "AT", "AU", "AV", "BA" "BB" and "BP" have been collected and processed by DDBJ, and the rest have been prepared by GenBank and EMBL/EBI. There have been a number of genome projects going on worldwide. Among them human genome projects have probably been most productive and yielded a large number of ordinary sequences, huge amounts of ESTs and quantities of genome sequences. Thus, we have the human(HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. Note that the EST division also contains human sequences. The present release does not have the ORG division. Thus, if you are interested in human mitochondrial sequences, for example, you are now advised to refer to the HUM division. The HUM division in this release was recorded in 15 files each of which had 300 MB storage capacity. Incidentally, the BCT, INV, PLN, PAT, VRL and ROD divisions were recorded in 4, 4, 4, 4, 2, 2 files, respectively. This release also includes a division (PAT) for patent data. The patent data are those which the Japanese Patent Office (JPO), United States Patent and Trademark Office (USPTO), and the European Patent Office (EPO) collected and processed. The accession numbers of the patent data collected by the Japanese Patent Office start with the prefix "E", those collected and supplied by USPTO and GenBank respectively start with "I" and "AR", and those collected and supplied by EPO and EMBL/EBI respectively start with "A" and "AX". The entries with the prefixes "I","AR", "A","AX" and "E" were allocated to three files (ddbjpat1.seq _ ddbjpat3.seq) in the DDBJ format. Note also that unauthorized use of the patent data may cause legal issues for which we take no responsibility. In the present release, the SOURCE in the flat file was revisited and revised if necessary in accordance with the unified taxonomy database common to the three data banks. The number of ESTs has been increasing at an enormous rate and is expected to be growing even more rapidly in the future. Therefore, EST data were stored in 122 files each of which had the same storage capacity as the file of the HUM division. The present release includes the GSS division. GSS stands for the Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. This division was recorded in 36 files similarly to the HUM division. This release also includes the High Throughput Genomic Sequence (HTGS), which comes mainly from genome project teams which deal with a clone as a sequencing unit. HTGS in this release were recorded in 27 files similarly to the HUM division. The index files are not presented in this release except for ddbjacc.idx, ddbjgen.idx, ddbjjou.idx, and ddbjkey.idx. Instead, we have included a program by which to make the index files not presented in this release. For the use of the program, see the files, seq2indexes.doc, seq2indexes.c, and seq2indexes.h in this release. The present release contains amino acid sequences that were translated from the corresponding nucleotide sequences in our database. In the translation we paid much attention to the fact that some species or organella have a codon different from the universal one, and used the proper codon table. If you find an incorrect codon in a translated sequence, please let us know. The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence (see Table 1). It is expressed like AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. We terminated the RNA division. The RNA data were redistributed according to the category of the organism. Therefore, you will find a human RNA sequence, for example, in the HUM division. The present release includes a division, CON. The CON division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. The current number of the entries of this division is 9,822. The present release also includes, HTC (High Throughput cDNA). The definition of the HTC division is as follows. This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. This release is published by the following DDBJ staff. General administration T. Gojobori, Y. Fukuma, Y. Katsube, M. Maruyama, K. Okuda, J. Sugiyama, H. Tsutsui (hold), Y. Ueda, T. Umezawa, A. Watanabe Database construction Y. Tateno, S. Miyazaki, H. Aono, N. Asakawa, M. Ejima, M. Gojobori, A. Hashizume, M. Hirahata, Y. Maruyama, J. Mashima, N. Murakata, A. Okada, M. Okaneya, T. Okido, M. Suzuki, H. Tsutsui, Y. Yamamoto Database software development and management H. Sugawara, M. Ota, S. Miyazaki (hold), Y. Suzuki, Y. Fujisawa, M. Fumoto, H. Hashimoto, T. Iizuka (hold), N. Ishizaka, K. Kaneda, T. Kato, Y. Kawanishi, T. Koike, S. Kuroda, K. Mamiya, S. Misu, N. Nishimiya, T. Okayama, Y. Shigemoto, Y. Sugiyama, K. Suzuki, N. Takahashi, N. Tanaka, T. Takaki System management K. Nishikawa, K. Ikeo, N. Hoshi, T. Iizuka, A. Kusakabe, M. Nagura, F. Sugiyama, Y. Sugisaki, K. Yoshioka Editorial and public relations N. Saitou, K. Fukami-Kobayashi, H. Ichikawa, K. Ichikawa, T. Kawamoto, J. Kohira, S. Nagira, Y. Sueki Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Mishima 411-8540, Japan Phone: +81 55 981 6853 FAX: +81 55 981 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp/ (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp/ (for DDBJ sequence data submission system SAKURA) Acknowledgement: We are grateful to NCBI and EMBL/EBI for a firm friendship and an excellent collaboration with us. We also thank the Japanese Patent Office for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ Database Release History Release Date Entries Bases Comments 49 04/02 16,503,157 18,579,627,226 48 01/02 15,016,100 16,197,713,855 47 10/01 13,266,610 14,145,671,645 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------------------------------------------------------------ This release covers 18 categories of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct.*** Category for bacteria ddbjest.*** Category for EST (expressed sequence tag) ddbjhtc.*** Category for HTC (high throughput cDNA) ddbjhtg.*** Category for HTG (high throughput genomic sequence) ddbjhum.*** Category for human ddbjgss.*** Category for GSS (Genome Survey Sequence) ddbjinv.*** Category for invertebrates ddbjmam.*** Category for mammals other than primates and rodents ddbjpat.*** Category for patents ddbjphg.*** Category for phages ddbjpln.*** Category for plants ddbjpri.*** Category for primates other than human ddbjrod.*** Category for rodents ddbjsts.*** Category for STS (sequence tagged site) ddbjsyn.*** Category for synthetic DNAs ddbjuna.*** Category for unannotated sequences ddbjvrl.*** Category for viruses ddbjvrt.*** Category for vertebrates other than mammals ------------------------------------------------------------------------------ Each category then has the following nine files. Note that all the files except for ddbj***.seq are created by the user by use of seq2indexes as mentioned in the release note. ------------------------------------------------------------------------------ ddbj***.seq List of an entry in DDBJ format, see Table 1. ddbj***.acc List of the accession numbers, see Table 2 . ddbj***.aut List of the authors, see Table 3. ddbj***.dir List of the short directory in DDBJ style, see Table 4. ddbj***.idx List of indices, see Table 5. ddbj***.jou List of the journals, see Table 6. ddbj***.key List of the key words, see Table 7. ddbj***.org List of the species names, see Table 8. ddbj***.sdr List of the short directory in DDBJ style, see Table 9. ------------------------------------------------------------------------------ Table 1. Part of the contents in the file 'ddbjbct.seq'. This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA BCT 07-FEB-1999 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli (strain:W3110) cDNA to mRNA. ORGANISM Escherichia coli Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Miki Jishage, National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail:mjishage@lab.nig.ac.jp, Tel:0559-81-6742, Fax:0559-81-6746) REFERENCE 2 (bases 1 to 993) AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 (sites) AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 (sites) AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol Gen Genet 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /organism="Escherichia coli" /sequenced_mol="cDNA to mRNA" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK" /transl_table=11 mutation 75 /citation=[3] /replace="t" mutation 97 /citation=[3] /replace="t" mutation 99 /citation=[3] /replace="t" mutation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t 0 others ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ Table 2. Part of the contents in the file 'ddbjbct.acc'. The first column refers to the secondary accession number, second column to the locus name, and third to the primary accession number. The primary number may be the same as the secondary number. They are arranged in the ascending order of the secondary accession numbers. ------------------------------------------------------------------------------ D00001 -> ECOPBPAA X04516 D00002 -> ECOPYRH X04469 D00006 -> PNS981TET D00006 D00020 -> COLE2LYS D00020 D00021 -> COLE31YS D00021 D00038 -> BRLAM330 D00038 D00066 -> BAC139AC D00066 D00067 -> ECONANA M20207 D00069 -> ECOUVRD2 D00069 D00087 -> BACXYNAA D00087 ------------------------------------------------------------------------------ Table 3. Part of the contents in the file 'ddbjbct.aut'. For each author name given on the left to the arrow, the corresponding locus name and primary accession number are respectively listed on the right. They are arranged in the alphabetical order of the author names. ------------------------------------------------------------------------------ Aan,F. -> STYCRR X05210 Aan,F. -> STYENZI M76176 Aaronson,W. -> ECOKPSD M64977 Aaronson,W. -> ECONEUA J05023 Abad-Lapuebla,M.A. -> VIBTDHI D90238 Abdel-Mawgood,A.L. -> CYAPSBHA X16394 Abdel-Meguid,S.S. -> TRNGDRECM J01843 Abdelal,A. -> STYCARA M36540 Abdelal,A. -> STYCARAB X13200 Abdelal,A.H. -> PSENOSA M60717 ------------------------------------------------------------------------------ Table 4. Part of the short directory in DDBJ style in the file 'ddbjbct.dir'. For each locus name given in the first column, the corresponding primary accession number, molecular type, number of nucleotide pairs, and description for the locus are respectively listed. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ ABCAARAA M34830 ds-DNA 1624 A.aceti acetic acid resistance protein (aarA) gene, complete cds. ABCADHCC D00635 ds-DNA 4230 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. ABCALDH D00521 ds-DNA 2683 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. ABCBCSAA M37202 ds-DNA 9540 A.xylinum bcs B, bcs C and bcs D genes, complete cds and bcs A gene, partial cds. ABCCELA M76548 ds-DNA 1165 Acetobacter xylinum UDP pyrophosphorylase (celA) gene, complete cds. ABCCELSYN X54676 ds-DNA 5363 A. xylinum gene for cellulose biosynthesis ABCIS1380 D10043 ds-DNA 1665 A.pasteurianus insertion sequence IS1380. ACAADH1 D90004 ds-DNA 2467 Acetobacter aceti(K6033) alcohol dehydrogenase subunit gene(adh1). ACCAAC2 M62833 ds-DNA 1123 Acinetobacter baumannii aminoglycoside acetyltr ansferase (aac2) gene, complete cds. ACCACEAA M62822 ds-DNA 1874 A.baumannii chloramphenicol acetyltransferase (cat) gene, complete cds. ------------------------------------------------------------------------------ Table 5. Part of the contents in the file 'ddbjbct.idx'. The first column refers to the locus name, second column to the starting site of the locus in byte, and third to its ending site in byte. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ %***************************** #ABCAARAA 0 3211 #ABCADHCC 3212 10608 #ABCALDH 10609 15864 #ABCBCSAA 15865 29583 #ABCCELA 29584 32289 #ABCCELSYN 32290 40960 #ABCIS1380 40961 44711 #ACAADH1 44712 49357 #ACCAAC2 49358 52395 ------------------------------------------------------------------------------ Table 6. Part of the contents in the file 'ddbjbct.jou'. This gives information on the journal in which sequence data were published. ------------------------------------------------------------------------------ (in) Chaloupka,J. and Krumphanzl,V. (Eds.); Extracellular Enzymes of Microorganisms: 129-137, Plenum Press, New York (1987) -> BACAMYABS M57457 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16S M55011 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SA M55006 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SB M55008 (in) Hoch,J.A. and Setlow,P. (Eds.); Molecular Biology of Microbial Differentiation: 85-94, American Society for Microbiology, Washington, DC (1985) -> BACSPOII M57606 (in) Holmgren,A. (Ed.); Thioredoxin and Glutaredoxin Systems: Structure and Function: 11-19, Unknown name, Unknown city (1986) -> ECOTRXA1 M54881 (in) Kjeldgaard,N.C. and Maaloe,O. (Eds.); Control of ribosome synthesis: 138-143, Academic Press, New York (1976) -> ECOLAC J01636 (in) Losick,R. and Chamberlin,M. (Eds.); RNA polymerase: 455-472, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1976) -> ECOTGY1 K01197 (in) Sikes,C.S. and Wheeler,A.P. (Eds.); Surface reactive peptides and polymers. Discovery and commercialization.: 186-200, American Chemical Society, Washington, D.C. (1991) -> ECOTGP J01714 (in) Sund,H. and Blauer,G. (Eds.); Protein-Ligand Interactions: 193-207, Walter de Gruyter, New York (1975) -> ECOLAC J01636 (in) Wu,R. and Grossman,L. (Eds.); Methods in Enzymology, Recombinant DNA, part E: In press, Academic Press, New York, N.Y. (1986) -> PLMCG M11320 Acta Microbiol. Pol. 35, 175-190 (1986) -> ECOTGG1 M54893 Actinomycetologica 5, 14-17 (1991) -> STMARGG D00799 Adv. Biophys. 21, 115-133 (1986) -> R10REP M26840 Adv. Biophys. 21, 175-192 (1986) -> ECONUSAA M26839 Adv. Enzyme Regul. 21, 225-237 (1983) -> ECOPURFA M26893 Adv. Exp. Med. Biol. 195, 239-246 (1986) -> ECOAPT M14040 Agric. Biol. Chem. 50, 2155-2158 (1986) -> ECONANA M20207 Agric. Biol. Chem. 50, 2771-2778 (1986) -> BRLAM330 D00038 Agric. Biol. Chem. 51, 2019-2022 (1987) -> BACCGT D00129 Agric. Biol. Chem. 51, 2641-2648 (1987) -> STRSAGP D00219 Agric. Biol. Chem. 51, 2807-2809 (1987) -> BACPGECR M35503 Agric. Biol. Chem. 51, 3133-3135 (1987) -> BACXYLAP D00312 Agric. Biol. Chem. 51, 455-463 (1987) -> BACHDCRY D00117 Agric. Biol. Chem. 51, 953-955 (1987) -> BACXYNAA D00087 Agric. Biol. Chem. 52, 1565-1573 (1988) -> BACIP135 D00348 Agric. Biol. Chem. 52, 1785-1789 (1988) -> BACTMR D00343 Agric. Biol. Chem. 52, 2243-2246 (1988) -> PSEGI D00342 Agric. Biol. Chem. 52, 399-406 (1988) -> BACAMYEB M35517 Agric. Biol. Chem. 52, 479-487 (1988) -> ECAPALI D00217 ------------------------------------------------------------------------------ Table 7. Part of the contents in the file 'ddbjbct.key'. For the locus and accession number respectively given on the right to the arrow, the corresponding key words are listed on the left. ------------------------------------------------------------------------------ A.aceti acetic acid resistance protein (aarA) gene, complete cds. -> ABCAARAA M34830 acetic acid resistance protein. -> ABCAARAA M34830 Cloning of genes responsible for acetic acid resistance in acetobacter aceti -> ABCAARAA M34830 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. -> ABCADHCC D00635 alcohol dehydrogenase; cytochrome c. -> ABCADHCC D00635 Cloning and sequencing of the gene cluster encoding two subunits of membrane- bound alcohol dehydrogenase from Acetobacter polyoxogenes -> ABCADHCC D00635 These data kindly submitted in computer readable form by: Toshimi Tamaki Nakano Central Biochemical Institute 2-6 Nakamura-cho Handa-shi, Aichi-ken 475 Japan Phone: 0569-21-3331 Fax: 0569-23-8486 -> ABCADHCC D00635 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. -> ABCALDH D00521 aldehyde dehydrogenase gene; ethanol oxidation; membrane-bound enzyme. -> ABCALDH D00521 Nucleotide sequence of the membrane-bound aldehyde dehydrogenase gene from Acetobacter polyoxogenes -> ABCALDH D00521 ------------------------------------------------------------------------------ Table 8. Part of the contents in the file 'ddbjbct.org'. For the locus and accession number respectively given on the right to the arrow, the corresponding taxonomic names are listed on the left. They are arranged in the alphabetical order of the species names. ------------------------------------------------------------------------------ A. nidulans 6301 DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRUBPS X00019 A. nidulans DNA, clone pAN4. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGGX X00343 A. nidulans DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGG X00512 A. polyoxogenes genomic DNA. Acetobacter polyoxogenes Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. - > ABCADHCC D00635 A. quadruplicatum (strain PR-6) DNA, clone pAQPR1. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUPCAB K02660 A. quadruplicatum (strain PR6) DNA. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUCPCAB K02659 A. vinelandii DNA. Azotobacter vinelandii Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> AVINIFUSV M17349 A.aceti (strain 10-8) DNA, clone pAR1611. Acetobacter aceti Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> ABCAARAA M34830 A.actinomycetemcomitans (strain JP2) DNA, clone lambda-OP8. Actinobacillus actinomycetemcomitans Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Pasteurellaceae. -> ACNLKTXN M27399 A.anitratum DNA, clone pLJD1. Acinetobacter anitratum Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Neisseriaceae. -> ACCCITSYN M33037 ------------------------------------------------------------------------------ Table 9. Part of the short directory file in DDBJ style in the file 'ddbjbct.sdr'. The short directory file contains brief descriptions of all of the sequence entries contained in the DDBJ style. ------------------------------------------------------------------------------ ABCAARAA A.aceti acetic acid resistance protein (aarA) gene, complete 1624bp ABCADHCC A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and 4230bp ABCALDH A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, 2683bp ABCBCSABCD A.xylinum bcs A, B, C and D genes, complete cds's. 9540bp ABCCELA Acetobacter xylinum UDP pyrophosphorylase (celA) gene, 1165bp ABCCELSYN A. xylinum gene for cellulose biosynthesis 5363bp ABCIS1380 A.pasteurianus insertion sequence IS1380. 1665bp ACAADH1 Acetobacter aceti(K6033) alcohol dehydrogenase subunit 2467bp ACCAAC2 Acinetobacter baumannii aminoglycoside acetyltransferase 1123bp ACCACEAA A.baumannii chloramphenicol acetyltransferase (cat) gene, 1874bp ACCAPHA6 Acinetobacter baumannii aphA-6 gene. 1170bp ACCBENABCA A.calcoaceticus BenA, BenB, BenC, BenD, and BenE proteins 15922bp ACCCAT Acinetobacter calcoaceticus cat operon. 15922bp ACCCATAM A.calcoaceticus catA and catM genes, encoding catechol 1, 5537bp ACCCHMO Acinetobacter sp. cyclohexanone monooxygenase gene, complete 2128bp ACCCITSYN A.anitratum citrate synthase gene, complete cds. 1895bp ------------------------------------------------------------------------------ In addition to the 9 tables the four following index files are included in this release. These files were prepared irrespective of the 10 categories of taxonomic divisions. Accession number index file Keyword phrase index file Journal citation index file Gene name index file A brief description is given for each file in the following. Table 10. Part of the accession number index file in the 'ddbjacc.idx'. The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00100 PSEASPAA BCT D00100 D00101 RABNP450R MAM D00101 D00102 HUMLTX HUM D00102 D00103 AFARRN5SA BCT D00103 AFRRN5SA BCT X05517 D00104 AFARRN5SB BCT D00104 AFRRN5SB BCT X05518 D00105 AFARRN5S BCT D00105 ASRRN5S BCT X05524 D00106 ACH5SRR BCT D00106 AXRRN5S BCT X05522 AXRRN5SA BCT X05523 D00107 ACH5SRRX BCT D00107 ACRRN5S BCT X05521 ------------------------------------------------------------------------------ Table 11. Part of the keyword phrase index file in the 'ddbjkey.idx'. Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ A CHANNEL DROCHA INV M17155 A COMPONENT SQLCVEA VRL M38183 A LOCUS GORGOGOA3 PRI X54375 GORGOGOA4 PRI X54376 A LOCUS ALLELE GORA0101 PRI X60258 GORA0201 PRI X60259 GORA0401 PRI X60257 GORA0501 PRI X60256 A MULTI-GENE FAMILY RICGLUTE PLN D00584 A PROTEIN MS2AAR PHG M25187 ST1APCS PHG M25396 A SEQUENCE HS5TOA30 VRL D00148 HS5TOA31 VRL D00147 ------------------------------------------------------------------------------ Table 12. Part of the journal citation index file in 'ddbjjou.idx'. The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ ACTA BIOCHIM. BIOPHYS. SIN. 23, 246-253 (1992) HUMPLASINS HUM M98056 ACTA BIOCHIM. BIOPHYS. SIN. 28, 233-239(1996) TKTII PLN X82230 ACTA BIOCHIM. POL. 24, 301-318 (1977) LUPTRFJ PLN K00345 LUPTRFN PLN K00346 ACTA BIOCHIM. POL. 26, 369-381(1979) HVTRNPHE PLN X02683 ACTA BIOCHIM. POL. 29, 143-149 (1982) EMEMTA PLN M32572 EMEMTB PLN M32573 EMEMTC PLN M32574 EMEMTD PLN M32575 EMEMTE PLN M32576 ACTA BIOCHIM. POL. 34, 21-27 (1987) LUPNOSP PLN M32571 ------------------------------------------------------------------------------ Table 13. Part of the gene name index file in 'ddbjgen.idx'. This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ AACC8 STMAACC8 BCT M55426 AACC9 MPUAACC9 BCT M55427 AACT HUMA1ACM PRI K01500 HUMA1ACMA PRI X00947 HUMA1ACMB PRI M18035 HUMAACT1 PRI M18906 HUMAACT2 PRI M22533 HUMAACTA PRI J05176 AAD INTINTORF BCT L06418 LMOMO229D BCT X17478 AAD A1 ENTAAC3VI BCT M88012 AAD9 ENEAAD9A BCT M69221 AADA LMOMO229A BCT X17479 S52249 BCT S52249 SYNAADA SYN M60473 TRNTAAB BCT M55547 TRNTN21CAS BCT M86913 ------------------------------------------------------------------------------ The files in this release are arranged in the following order with non- labeled format. Release note ddbjrel.txt 1119 records Category for bacteria1 18564 entries, 125389435 bases ddbjbct1.seq 4724933 records Category for bacteria2 70605 entries, 107227368 bases ddbjbct2.seq 5207918 records Category for bacteria3 23647 entries, 127352943 bases ddbjbct3.seq 4710265 records Category for bacteria4 22524 entries,47292467 bases ddbjbct4.seq 2055319 records Category for EST1 (expressed sequence tag), 93358 entries, 34679400 bases ddbjest1.seq 5519868 records Category for EST2 (expressed sequence tag), 96169 entries, 39209973 bases ddbjest2.seq 5559699 records Category for EST3 (expressed sequence tag), 97558 entries, 37846057 bases ddbjest3.seq 5557765 records Category for EST4 (expressed sequence tag), 90857 entries, 27856391 bases ddbjest4.seq 5479611 records Category for EST5 (expressed sequence tag), 97174 entries, 38243316 bases ddbjest5.seq 5574125 records Category for EST6 (expressed sequence tag), 101533 entries, 40249207 bases ddbjest6.seq 5624209 records Category for EST7 (expressed sequence tag), 100376 entries, 38827261 bases ddbjest7.seq 5585583 records Category for EST8 (expressed sequence tag), 99373 entries, 38412624 bases ddbjest8.seq 5560602 records Category for EST9 (expressed sequence tag), 100922 entries, 40001398 bases ddbjest9.seq 5613549 records Category for EST10 (expressed sequence tag), 101569 entries, 39781119 bases ddbjest10.seq 5586954 records Category for EST11 (expressed sequence tag), 99233 entries, 41130792 bases ddbjest11.seq 5546696 records Category for EST12 (expressed sequence tag), 101504 entries, 44215680 bases ddbjest12.seq 5592317 records Category for EST13 (expressed sequence tag), 107879 entries, 43195374 bases ddbjest13.seq 5628158 records Category for EST14 (expressed sequence tag), 103264 entries, 41893510 bases ddbjest14.seq 5583429 records Category for EST15 (expressed sequence tag), 99350 entries, 41670964 bases ddbjest15.seq 5545622 records Category for EST16 (expressed sequence tag), 95089 entries, 42087459 bases ddbjest16.seq 5530500 records Category for EST17 (expressed sequence tag), 101285 entries, 41921386 bases ddbjest17.seq 5613554 records Category for EST18 (expressed sequence tag), 99356 entries, 43643266 bases ddbjest18.seq 5584859 records Category for EST19 (expressed sequence tag), 95335 entries, 40145509 bases ddbjest19.seq 5543450 records Category for EST20 (expressed sequence tag), 100035 entries, 42186678 bases ddbjest20.seq 5569823 records Category for EST21 (expressed sequence tag),103074 entries, 48026902 bases ddbjest21.seq 5393494 records Category for EST22 (expressed sequence tag), 105077 entries, 78077640 bases ddbjest22.seq 5334959 records Category for EST23 (expressed sequence tag), 123495 entries, 64179708 bases ddbjest23.seq 5502764 records Category for EST24 (expressed sequence tag), 117784 entries, 59222413 bases ddbjest24.seq 5678172 records Category for EST25 (expressed sequence tag), 98725 entries, 37675380 bases ddbjest25.seq 5555407 records Category for EST26 (expressed sequence tag), 90175 entries, 23798504 bases ddbjest26.seq 5540022 records Category for EST27 (expressed sequence tag), 85903 entries, 25498946 bases ddbjest27.seq 5458932 records Category for EST28 (expressed sequence tag), 58975 entries, 15957931 bases ddbjest28.seq 5205854 records Category for EST29 (expressed sequence tag), 59019 entries, 16287790 bases ddbjest29.seq 5191687 records Category for EST30 (expressed sequence tag), 86702 entries, 32551878 bases ddbjest30.seq 5462440 records Category for EST31 (expressed sequence tag), 118354 entries, 53802655 bases ddbjest31.seq 5715171 records Category for EST32 (expressed sequence tag), 104988 entries, 54145759 bases ddbjest32.seq 5419844 records Category for EST33 (expressed sequence tag), 99109 entries, 47807849 bases ddbjest33.seq 5287120 records Category for EST34 (expressed sequence tag), 127543 entries, 66627913 bases ddbjest34.seq 5672213 records Category for EST35 (expressed sequence tag), 100476 entries, 44076464 bases ddbjest35.seq 5566330 records Category for EST36 (expressed sequence tag), 90680 entries, 39973209 bases ddbjest36.seq 5438654 records Category for EST37 (expressed sequence tag), 95360 entries, 41087993 bases ddbjest37.seq 5499376 records Category for EST38 (expressed sequence tag), 101251 entries,41005949 bases ddbjest38.seq 5630937 records Category for EST39 (expressed sequence tag), 99159 entries, 39004755 bases ddbjest39.seq 5631412 records Category for EST40 (expressed sequence tag), 83177 entries, 37824463 bases ddbjest40.seq 5389915 records Category for EST41 (expressed sequence tag), 97871 entries, 43412442 bases ddbjest41.seq 5590080 records Category for EST42 (expressed sequence tag), 100130 entries, 45095711 bases ddbjest42.seq 5580773 records Category for EST43 (expressed sequence tag), 99507 entries, 35656143 bases ddbjest43.seq 5626251 records Category for EST44 (expressed sequence tag), 111858 entries, 50122608 bases ddbjest44.seq 5735664 records Category for EST45 (expressed sequence tag), 60348 entries, 16987744 bases ddbjest45.seq 5152166 records Category for EST46 (expressed sequence tag), 58472 entries, 17088146 bases ddbjest46.seq 5128609 records Category for EST47 (expressed sequence tag), 58869 entries, 18092700 bases ddbjest47.seq 5113426 records Category for EST48 (expressed sequence tag), 58817 entries, 18389823 bases ddbjest48.seq 5113614 records Category for EST49 (expressed sequence tag), 58868 entries, 18434355 bases ddbjest49.seq 5100540 records Category for EST50 (expressed sequence tag), 58632 entries, 17546804 bases ddbjest50.seq 5142086 records Category for EST51 (expressed sequence tag), 59191 entries, 18268995 bases ddbjest51.seq 5106748 records Category for EST52 (expressed sequence tag), 60236 entries, 17944813 bases ddbjest52.seq 5110405 records Category for EST53 (expressed sequence tag), 59985 entries, 18907466 bases ddbjest53.seq 5089929 records Category for EST54 (expressed sequence tag), 60529 entries, 17669631 bases ddbjest54.seq 5192749 records Category for EST55 (expressed sequence tag), 57357 entries, 30077844 bases ddbjest55.seq 5152866 records Category for EST56 (expressed sequence tag), 53900 entries, 27291877 bases ddbjest56.seq 5066673 records Category for EST57 (expressed sequence tag), 53462 entries, 22140127 bases ddbjest57.seq 5065880 records Category for EST58 (expressed sequence tag), 53052 entries, 22949130 bases ddbjest58.seq 5040017 records Category for EST59 (expressed sequence tag), 52957 entries, 23081278 bases ddbjest59.seq 5044261 records Category for EST60 (expressed sequence tag), 92167 entries, 38128476 bases ddbjest60.seq 5499893 records Category for EST61 (expressed sequence tag), 97691 entries, 36988979 bases ddbjest61.seq 5662145 records Category for EST62 (expressed sequence tag), 97644 entries, 52731687 bases ddbjest62.seq 5487956 records Category for EST63 (expressed sequence tag), 102665 entries, 56424799 bases ddbjest63.seq 5561119 records Category for EST64 (expressed sequence tag), 100782 entries, 50542725 bases ddbjest64.seq 5548458 records Category for EST65 (expressed sequence tag), 99211 entries, 54357919 bases ddbjest65.seq 5527627 records Category for EST66 (expressed sequence tag), 94915 entries, 47112141 bases ddbjest66.seq 5488073 records Category for EST67 (expressed sequence tag), 99201 entries, 53760740 bases ddbjest67.seq 5560233 records Category for EST68 (expressed sequence tag), 95097 entries, 49363612 bases ddbjest68.seq 5486813 records Category for EST69 (expressed sequence tag), 93027 entries, 56278008 bases ddbjest69.seq 5447834 records Category for EST70 (expressed sequence tag), 93251 entries, 45827565 bases ddbjest70.seq 5484160 records Category for EST71 (expressed sequence tag), 97399 entries, 58184532 bases ddbjest71.seq 5506799 records Category for EST72 (expressed sequence tag), 90890 entries, 56023621 bases ddbjest72.seq 5393181 records Category for EST73 (expressed sequence tag), 99810 entries, 54479895 bases ddbjest73.seq 5543518 records Category for EST74 (expressed sequence tag), 93243 entries, 39852232 bases ddbjest74.seq 5578895 records Category for EST75 (expressed sequence tag), 86105 entries, 46183743 bases ddbjest75.seq 5344546 records Category for EST76 (expressed sequence tag), 89330 entries, 49929776 bases ddbjest76.seq 5441060 records Category for EST77 (expressed sequence tag), 94348 entries, 55465178 bases ddbjest77.seq 5473179 records Category for EST78 (expressed sequence tag), 99598 entries, 42202208 bases ddbjest78.seq 5612782 records Category for EST79 (expressed sequence tag), 98963 entries, 36210792 bases ddbjest79.seq 5610674 records Category for EST80 (expressed sequence tag), 96626 entries, 51005384 bases ddbjest80.seq 5508458 records Category for EST81 (expressed sequence tag), 92458 entries, 52186537 bases ddbjest81.seq 5403034 records Category for EST82 (expressed sequence tag), 104757 entries, 54889803 bases ddbjest82.seq 5528772 records Category for EST83 (expressed sequence tag), 95754 entries, 64490300 bases ddbjest83.seq 5451788 records Category for EST84 (expressed sequence tag), 89824 entries, 55066947 bases ddbjest84.seq 5405114 records Category for EST85 (expressed sequence tag), 95141 entries, 61120846 bases ddbjest85.seq 5432933 records Category for EST86 (expressed sequence tag), 94590 entries, 59334685 bases ddbjest86.seq 5398395 records Category for EST87 (expressed sequence tag), 100545 entries, 60928117 bases ddbjest87.seq 5603029 records Category for EST88 (expressed sequence tag), 97403 entries, 62003139 bases ddbjest88.seq 5440819 records Category for EST89 (expressed sequence tag), 96225 entries, 62922476 bases ddbjest89.seq 5454458 records Category for EST90 (expressed sequence tag), 102602 entries, 45137035 bases ddbjest90.seq 5665659 records Category for EST91 (expressed sequence tag), 105086 entries, 51876441 bases ddbjest91.seq 5635655 records Category for EST92 (expressed sequence tag), 101148 entries, 57720452 bases ddbjest92.seq 5539552 records Category for EST93 (expressed sequence tag), 87346 entries, 47263113 bases ddbjest93.seq 5468069 records Category for EST94 (expressed sequence tag), 95947 entries, 52162699 bases ddbjest94.seq 5533954 records Category for EST95 (expressed sequence tag), 86535 entries, 46000844 bases ddbjest95.seq 5364510 records Category for EST96 (expressed sequence tag), 93009 entries, 56895511 bases ddbjest96.seq 5485248 records Category for EST97 (expressed sequence tag), 95002 entries, 59395768 bases ddbjest97.seq 5495219 records Category for EST98 (expressed sequence tag), 88210 entries, 50154537 bases ddbjest98.seq 5335614 records Category for EST99 (expressed sequence tag), 96795 entries, 55926002 bases ddbjest99.seq 5499097 records Category for EST100 (expressed sequence tag), 82168 entries, 49926664 bases ddbjest100.seq 5303297 records Category for EST101 (expressed sequence tag), 107873 entries, 58452294 bases ddbjest101.seq 5547168 records Category for EST102 (expressed sequence tag), 107002 entries, 60658496 bases ddbjest102.seq 5583184 records Category for EST103 (expressed sequence tag), 112854 entries, 59221905 bases ddbjest103.seq 5618377 records Category for EST104 (expressed sequence tag), 97213 entries, 57586361 bases ddbjest104.seq 5471892 records Category for EST105 (expressed sequence tag), 86753 entries, 40634503 bases ddbjest105.seq 5422455 records Category for EST106 (expressed sequence tag), 75190 entries, 38083686 bases ddbjest106.seq 5222603 records Category for EST107 (expressed sequence tag),81957 entries, 40497028 bases ddbjest107.seq 5361190 records Category for EST108 (expressed sequence tag), 79122 entries, 41579643 bases ddbjest108.seq 5294032 records Category for EST109 (expressed sequence tag), 98640 entries, 64424960 bases ddbjest109.seq 5541377 records Category for EST110 (expressed sequence tag), 92414 entries, 61896928 bases ddbjest110.seq 5450627 records Category for EST111 (expressed sequence tag), 90392 entries, 49931655 bases ddbjest111.seq 5535666 records Category for EST112 (expressed sequence tag), 81146 entries, 41112341 bases ddbjest112.seq 5364334 records Category for EST113 (expressed sequence tag), 89898 entries, 49436819 bases ddbjest113.seq 5491545 records Category for EST114 (expressed sequence tag), 83665 entries, 57533463 bases ddbjest114.seq 5279060 records Category for EST115 (expressed sequence tag), 92269 entries, 51857467 bases ddbjest115.seq 5416547 records Category for EST116 (expressed sequence tag), 130024 entries, 48433987 bases ddbjest115.seq 5818024 records Category for EST117 (expressed sequence tag), 110765 entries, 36618304 bases ddbjest117.seq 5753761 records Category for EST118 (expressed sequence tag), 93867 entries, 34600175 bases ddbjest118.seq 5547584 records Category for EST119 (expressed sequence tag), 96529 entries, 34286373 bases ddbjest119.seq 5539279 records Category for EST120 (expressed sequence tag), 103165 entries, 35693628 bases ddbjest120.seq 5690943 records Category for EST121 (expressed sequence tag), 94962 entries, 37044240 bases ddbjest121.seq 5525811 records Category for EST122 (expressed sequence tag), 73498 entries, 27898437 bases ddbjest122.seq 4232057 records Category for GSS1 (genome survey sequence), 102345 entries, 76684314 bases ddbjgss1.seq 5642119 records Category for GSS2 (genome survey sequence), 102426 entries, 72061092 bases ddbjgss2.seq 5646561 records Category for GSS3 (genome survey sequence), 105326 entries, 78627573 bases ddbjgss3.seq 5240662 records Category for GSS4 (genome survey sequence), 85099 entries, 71060626 bases ddbjgss4.seq 5225863 records Category for GSS5 (genome survey sequence), 83106 entries, 74985077 bases ddbjgss5.seq 5197585 records Category for GSS6 (genome survey sequence), 80035 entries, 64902325 bases ddbjgss6.seq 5130974 records Category for GSS7 (genome survey sequence), 117659 entries, 53450580 bases ddbjgss7.seq 5772625 records Category for GSS8 (genome survey sequence), 120035 entries, 52426684 bases ddbjgss8.seq 6006775 records Category for GSS9 (genome survey sequence), 112358 entries, 54895431 bases ddbjgss9.seq 5897146 records Category for GSS10 (genome survey sequence), 105258 entries, 55292186 bases ddbjgss10.seq 5826863 records Category for GSS11 (genome survey sequence), 103635 entries, 51612376 bases ddbjgss11.seq 5794361 records Category for GSS12 (genome survey sequence), 101756 entries, 51952929 bases ddbjgss12.seq 5761328 records Category for GSS13 (genome survey sequence), 97508 entries, 49099576 bases ddbjgss13.seq 5662733 records Category for GSS14 (genome survey sequence), 99994 entries, 56272370 bases ddbjgss14.seq 5674659 records Category for GSS15 (genome survey sequence), 92440 entries, 49460498 bases ddbjgss15.seq 5548780 records Category for GSS16 (genome survey sequence), 97672 entries, 49496633 bases ddbjgss16.seq 5649424 records Category for GSS17 (genome survey sequence), 94846 entries, 42807138 bases ddbjgss17.seq 5663733 records Category for GSS18 (genome survey sequence), 98765 entries, 52131140 bases ddbjgss18.seq 5677836 records Category for GSS19 (genome survey sequence), 94995 entries, 50267462 bases ddbjgss19.seq 5648363 records Category for GSS20 (genome survey sequence), 79285 entries, 38444298 bases ddbjgss20.seq 5407618 records Category for GSS21 (genome survey sequence), 75678 entries, 37219424 bases ddbjgss21.seq 5349402 records Category for GSS22 (genome survey sequence), 78643 entries, 34338281 bases ddbjgss22.seq 5405867 records Category for GSS23 (genome survey sequence), 85109 entries, 49783294 bases ddbjgss23.seq 5404913 records Category for GSS24 (genome survey sequence), 77569 entries, 43030050 bases ddbjgss24.seq 5357301 records Category for GSS25 (genome survey sequence), 93567 entries, 46494502 bases ddbjgss25.seq 5647070 records Category for GSS26 (genome survey sequence), 77339 entries, 32886001 bases ddbjgss26.seq 5380854 records Category for GSS27 (genome survey sequence), 92748 entries, 44237653 bases ddbjgss27.seq 5604827 records Category for GSS28 (genome survey sequence), 81880 entries, 44090195 bases ddbjgss28.seq 5427649 records Category for GSS29 (genome survey sequence), 99151 entries, 53929867 bases ddbjgss29.seq 5782681 records Category for GSS30 (genome survey sequence), 94658 entries, 57943992 bases ddbjgss30.seq 5592715 records Category for GSS31 (genome survey sequence), 104686 entries, 54234047 bases ddbjgss31.seq 5887735 records Category for GSS32 (genome survey sequence), 105249 entries, 57184206 bases ddbjgss32.seq 5825619 records Category for GSS33 (genome survey sequence), 123922 entries, 82324787 bases ddbjgss33.seq 6010642 records Category for GSS34 (genome survey sequence), 117908 entries, 66799881 bases ddbjgss34.seq 5910009 records Category for GSS35 (genome survey sequence), 115619 entries, 67109458 bases ddbjgss35.seq 5881988 records Category for GSS36 (genome survey sequence), 88492 entries, 38882030 bases ddbjgss36.seq 4373835 records Category for HTC (high throughput cDNA), 19619 entries, 24215180 bases ddbjhtc.seq 2429668 records Category for HTG1 (high throughput genome sequence), 1570 entries, 228700919 bases ddbjhtg1.seq 3989366 records Category for HTG2 (high throughput genome sequence), 2317 entries, 225961174 bases ddbjhtg2.seq 4011690 records Category for HTG3 (high throughput genome sequence), 3349 entries, 225232723 bases ddbjhtg3.seq 4021443 records Category for HTG4 (high throughput genome sequence), 2621 entries, 227313534 bases ddbjhtg4.seq 4009823 records Category for HTG5 (high throughput genome sequence), 1542 entries, 225799738 bases ddbjhtg5.seq 4012076 records Category for HTG6 (high throughput genome sequence), 1473 entries, 225958091 bases ddbjhtg6.seq 4011695 records Category for HTG7 (high throughput genome sequence), 1493 entries, 225553400 bases ddbjhtg7.seq 4011693 records Category for HTG8 (high throughput genome sequence), 1488 entries, 225854251 bases ddbjhtg8.seq 4010871 records Category for HTG9 (high throughput genome sequence), 1394 entries,227540023 bases ddbjhtg9.seq 3997586 records Category for HTG10 (high throughput genome sequence), 1462 entries, 226893271 bases ddbjhtg10.seq 4000581 records Category for HTG11 (high throughput genome sequence), 1713 entries, 224907147 bases ddbjhtg11.seq 4009482 records Category for HTG12 (high throughput genome sequence), 1457 entries, 228668348 bases ddbjhtg12.seq 3985766 records Category for HTG13 (high throughput genome sequence), 1662 entries, 220375651 bases ddbjhtg13.seq 4012124 records Category for HTG14 (high throughput genome sequence), 1677 entries, 221904545 bases ddbjhtg14.seq 4006536 records Category for HTG15 (high throughput genome sequence), 1603 entries, 223608449 bases ddbjhtg15.seq 4000501 records Category for HTG16 (high throughput genome sequence), 3207 entries, 205765514 bases ddbjhtg16.seq 4129423 records Category for HTG17 (high throughput genome sequence), 2010 entries, 220273808 bases ddbjhtg17.seq 4032261 records Category for HTG18 (high throughput genome sequence), 1650 entries, 222061701 bases ddbjhtg18.seq 4009889 records Category for HTG19 (high throughput genome sequence), 1823 entries, 220996721 bases ddbjhtg19.seq 4021295 records Category for HTG20 (high throughput genome sequence), 1968 entries, 219303396 bases ddbjhtg20.seq 4033630 records Category for HTG21 (high throughput genome sequence), 1918 entries, 219392254 bases ddbjhtg21.seq 4025243 records Category for HTG22 (high throughput genome sequence), 1977 entries, 220644318 bases ddbjhtg22.seq 4026852 records Category for HTG23 (high throughput genome sequence), 1968 entries, 221620523 bases ddbjhtg23.seq 4030182 records Category for HTG24 (high throughput genome sequence), 1315 entries, 229119056 bases ddbjhtg24.seq 3986493 records Category for HTG25 (high throughput genome sequence), 1256 entries, 232084320 bases ddbjhtg25.seq 3969360 records Category for HTG26 (high throughput genome sequence), 1312 entries, 230482110 bases ddbjhtg26.seq 3981103 records Category for HTG27 (high throughput genome sequence), 1561 entries, 220736817 bases ddbjhtg27.seq 3786857 records Category for human1, 8329 entries, 200016550 bases ddbjhum1.seq 4328481 records Category for human2, 1614 entries, 214811243 bases ddbjhum2.seq 4192063 records Category for human3, 1454 entries, 211142405 bases ddbjhum3.seq 4230303 records Category for human4, 1367 entries, 209725664 bases ddbjhum4.seq 4246682 records Category for human5, 1457 entries, 213348469 bases ddbjhum5.seq 4203242 records Category for human6, 1565 entries, 205586855 bases ddbjhum6.seq 4285768 records Category for human7, 1643 entries, 205039481 bases ddbjhum7.seq 4293181 records Category for human8, 39278 entries, 161072072 bases ddbjhum8.seq 4781503 records Category for human9, 48731 entries, 146052333 base s ddbjhum9.seq 4720929 records Category for human10, 4387 entries, 203643257 bases ddbjhum10.seq 4167389 records Category for human11, 2076 entries, 215433917 bases ddbjhum11.seq 4081695 records Category for human12, 2493 entries, 216223876 bases ddbjhum12.seq 4071641 records Category for human13, 2695 entries, 221020495 bases ddbjhum13.seq 4060957 records Category for human14, 31146 entries, 166653619 bases ddbjhum14.seq 4633460 records Category for human15, 61761 entries, 100780230 bases ddbjhum15.seq 4417697 records Category for invertebrates1, 7669 entries, 216592392 bases ddbjinv1.seq 4085093 records Category for invertebrates2, 27325 entries, 168376966 bases ddbjinv2.seq 4517122 records Category for invertebrates3, 69215 entries, 108735408 bases ddbjinv3.seq 5142429 records Category for invertebrates4, 16362 entries, 73548685 bases ddbjinv4.seq 2239900 records Category for mammals, 38110 entries, 39389782 bases ddbjmam.seq 2227032 records Category for patents1, 233141 entries, 97828436 bases ddbjpat1.seq 6398459 records Category for patents2, 159837 entries, 116345449 bases ddbjpat2.seq 5613367 records Category for patents3, 185692 entries, 93084707 bases ddbjpat3.seq 6186427 records Category for patents4, 19086entries, 4684600 bases ddbjpat4.seq 445447 records Category for phages, 1972 entries, 6547498 bases ddbjphg.seq 282031 records Category for plants1, 33510 entries, 158418188 bases ddbjpln1.seq 4603385 records Category for plants2, 90889 entries, 96492322 bases ddbjpln2.seq 5412757 records Category for plants3, 31257 entries, 148893632 bases ddbjpln3.seq 4611805 records Category for plants4, 52175 entries, 90027727 bases ddbjpln4.seq 3998049 records Category for primates, 14343 entries, 20872786 bases ddbjpri.seq 988656 records Category for rodents1, 32670 entries, 174302213 bases ddbjrod1.seq 4580473 records Category for rodents2, 47273 entries, 64185676 bases ddbjrod2.seq 3267893 records Category for STS (sequence tagged site), 116101 entries, 46596047 bases ddbjsts.seq 6849597 records Category for synthetic DNAs, 6625 entries, 12560736 bases ddbjsyn.seq 520144 records Category for unannotated sequences, 560 entries, 324751 bases ddbjuna.seq 26078 records Category for viruses1, 91633 entries, 75367733 bases ddbjvrl1.seq 5614484 records Category for viruses2, 59417 entries, 57776460 bases ddbjvrl2.seq 3731177 records Category for vertebrates, 71801 entries, 76549672 bases ddbjvrt.seq 4321801 records Accession number index file ddbjacc.idx 16535630 records Keyword phrase index file ddbjkey.idx 5799985 records Journal citation index file ddbjjou.idx 9411925 records Gene name index file ddbjgen.idx 890840 records