DNA Data Bank of Japan DNA Database Release 50, Jun. 2002, including 17,260,693 entries, 20,158,357,982 bases This database may be copied and redistributed without permission on the condition that all the statements in this release note are reproduced in each copy. The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank, and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of May 30, 2002. This unified database was made possible thanks to the international collaboration among the three data banks. All the entries have accordingly been annotated using the feature keys common to them. All the entries designated by the accession numbers with the prefixes "C", "D", "E", "AB", "AG", "AK", "AP", "AT", "AU", "AV", "BA" "BB" "BD" "BJ" and "BP" have been collected and processed by DDBJ, and the rest have been prepared by GenBank and EMBL/EBI. There have been a number of genome projects going on worldwide. Among them human genome projects have probably been most productive and yielded a large number of ordinary sequences, huge amounts of ESTs and quantities of genome sequences. Thus, we have the human(HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. Note that the EST division also contains human sequences. The present release does not have the ORG division. Thus, if you are interested in human mitochondrial sequences, for example, you are now advised to refer to the HUM division. The HUM division in this release was recorded in 17 files each of which had 300 MB storage capacity. Incidentally, the BCT, INV, PLN, PAT, VRL and ROD divisions were recorded in 4, 4, 5, 4, 2, 3 files, respectively. This release also includes a division (PAT) for patent data. The patent data are those which the Japanese Patent Office (JPO), United States Patent and Trademark Office (USPTO), and the European Patent Office (EPO) collected and processed. The accession numbers of the patent data collected by the Japanese Patent Office start with the prefix "E" and "BD", those collected and supplied by USPTO and GenBank respectively start with "I" and "AR", and those collected and supplied by EPO and EMBL/EBI respectively start with "A" and "AX". The entries with the prefixes "I","AR", "A","AX", "E" and "BD" were allocated to four files (ddbjpat1.seq _ ddbjpat4.seq) in the DDBJ format. Note also that unauthorized use of the patent data may cause legal issues for which we take no responsibility. In the present release, the SOURCE in the flat file was revisited and revised if necessary in accordance with the unified taxonomy database common to the three data banks. The number of ESTs has been increasing at an enormous rate and is expected to be growing even more rapidly in the future. Therefore, EST data were stored in 128 files each of which had the same storage capacity as the file of the HUM division. The present release includes the GSS division. GSS stands for the Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. This division was recorded in 37 files similarly to the HUM division. This release also includes the High Throughput Genomic Sequence (HTGS), which comes mainly from genome project teams which deal with a clone as a sequencing unit. HTGS in this release were recorded in 31 files similarly to the HUM division. The index files are not presented in this release except for ddbjacc.idx, ddbjgen.idx, ddbjjou.idx, and ddbjkey.idx. Instead, we have included a program by which to make the index files not presented in this release. For the use of the program, see the files, seq2indexes.doc, seq2indexes.c, and seq2indexes.h in this release. The present release contains amino acid sequences that were translated from the corresponding nucleotide sequences in our database. In the translation we paid much attention to the fact that some species or organella have a codon different from the universal one, and used the proper codon table. If you find an incorrect codon in a translated sequence, please let us know. The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence (see Table 1). It is expressed like AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. We terminated the RNA division. The RNA data were redistributed according to the category of the organism. Therefore, you will find a human RNA sequence, for example, in the HUM division. The present release includes a division, CON. The CON division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. The current number of the entries of this division is 9,897. The present release also includes, HTC (High Throughput cDNA). The definition of the HTC division is as follows. This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. This release is published by the following DDBJ staff. General administration T. Gojobori, Y. Fukuma, Y. Katsube, M. Maruyama, K. Okuda, H. Tsutsui (hold), Y. Ueda, T. Umezawa, A. Watanabe Database construction Y. Tateno, S. Miyazaki, H. Aono, M. Ejima, M. Gojobori, A. Hashizume, M. Hirahata, Y. Maruyama, J. Mashima, N. Murakata, A. Okada, M. Okaneya, T. Okido, M. Suzuki, H. Tsutsui, Y. Yamamoto Database software development and management H. Sugawara, S. Miyazaki (hold), Y. Suzuki, Y. Fujisawa, H. Hashimoto, T. Iizuka, N. Ishizaka, K. Kaneda, T. Kato, T. Koike, S. Kuroda, K. Mamiya, S. Misu, N. Nishimiya, T. Okayama, Y. Shigemoto, Y. Sugiyama, K. Suzuki, N. Takahashi, N. Tanaka, T. Takaki System management K. Nishikawa, K. Ikeo, N. Hoshi, T. Iizuka, A. Kusakabe, M. Nagura, F. Sugiyama, Y. Sugisaki, K. Yoshioka Editorial and public relations N. Saitou, K. Fukami-Kobayashi, H. Ichikawa, K. Ichikawa, T. Kawamoto, J. Kohira, S. Nagira Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Mishima 411-8540, Japan Phone: +81 55 981 6853 FAX: +81 55 981 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp/ (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp/ (for DDBJ sequence data submission system SAKURA) Acknowledgement: We are grateful to NCBI and EMBL/EBI for a firm friendship and an excellent collaboration with us. We also thank the Japanese Patent Office for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ Database Release History Release Date Entries Bases Comments 50 06/02 17,260,693 20,158,357,982 49 04/02 16,503,157 18,579,627,226 48 01/02 15,016,100 16,197,713,855 47 10/01 13,266,610 14,145,671,645 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------------------------------------------------------------ This release covers 18 categories of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct.*** Category for bacteria ddbjest.*** Category for EST (expressed sequence tag) ddbjhtc.*** Category for HTC (high throughput cDNA) ddbjhtg.*** Category for HTG (high throughput genomic sequence) ddbjhum.*** Category for human ddbjgss.*** Category for GSS (Genome Survey Sequence) ddbjinv.*** Category for invertebrates ddbjmam.*** Category for mammals other than primates and rodents ddbjpat.*** Category for patents ddbjphg.*** Category for phages ddbjpln.*** Category for plants ddbjpri.*** Category for primates other than human ddbjrod.*** Category for rodents ddbjsts.*** Category for STS (sequence tagged site) ddbjsyn.*** Category for synthetic DNAs ddbjuna.*** Category for unannotated sequences ddbjvrl.*** Category for viruses ddbjvrt.*** Category for vertebrates other than mammals ------------------------------------------------------------------------------ Each category then has the following nine files. Note that all the files except for ddbj***.seq are created by the user by use of seq2indexes as mentioned in the release note. ------------------------------------------------------------------------------ ddbj***.seq List of an entry in DDBJ format, see Table 1. ddbj***.acc List of the accession numbers, see Table 2 . ddbj***.aut List of the authors, see Table 3. ddbj***.dir List of the short directory in DDBJ style, see Table 4. ddbj***.idx List of indices, see Table 5. ddbj***.jou List of the journals, see Table 6. ddbj***.key List of the key words, see Table 7. ddbj***.org List of the species names, see Table 8. ddbj***.sdr List of the short directory in DDBJ style, see Table 9. ------------------------------------------------------------------------------ The format of LOCUS line in the flat file will be changed as shown below to adjust to the GenBank format from the next release. ------------------------------------------------------------------------------ Present (-rel. 50): LOCUS AB000001 660 bp DNA PLN 01-FEB-2001 New (rel. 51-): LOCUS AB000001 660 bp DNA linear PLN 01-FEB-2001 New format specification: --------- -------- Positions Contents --------- -------- 01-05 'LOCUS' 06-12 spaces 13-28 Locus name 29-29 space 30-40 Length of sequence, right-justified 41-41 space 42-43 bp 44-44 space 45-47 spaces, ss- (single-stranded), ds- (double-stranded), or ms- (mixed-stranded) 48-53 NA, DNA, RNA, tRNA (transfer RNA), rRNA (ribosomal RNA), mRNA (messenger RNA), uRNA (small nuclear RNA), snRNA, snoRNA. Left justified. 54-55 space 56-63 'linear' followed by two spaces, or 'circular' 64-64 space 65-67 The division code 68-68 space 69-79 Date, in the form dd-MMM-yyyy (e.g., 15-MAR-1991) ------------------------------------------------------------------------------ Table 1. Part of the contents in the file 'ddbjbct.seq'. This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA BCT 07-FEB-1999 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli (strain:W3110) cDNA to mRNA. ORGANISM Escherichia coli Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Miki Jishage, National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail:mjishage@lab.nig.ac.jp, Tel:0559-81-6742, Fax:0559-81-6746) REFERENCE 2 (bases 1 to 993) AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 (sites) AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 (sites) AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol Gen Genet 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /organism="Escherichia coli" /sequenced_mol="cDNA to mRNA" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK" /transl_table=11 mutation 75 /citation=[3] /replace="t" mutation 97 /citation=[3] /replace="t" mutation 99 /citation=[3] /replace="t" mutation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t 0 others ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ Table 2. Part of the contents in the file 'ddbjbct.acc'. The first column refers to the secondary accession number, second column to the locus name, and third to the primary accession number. The primary number may be the same as the secondary number. They are arranged in the ascending order of the secondary accession numbers. ------------------------------------------------------------------------------ D00001 -> ECOPBPAA X04516 D00002 -> ECOPYRH X04469 D00006 -> PNS981TET D00006 D00020 -> COLE2LYS D00020 D00021 -> COLE31YS D00021 D00038 -> BRLAM330 D00038 D00066 -> BAC139AC D00066 D00067 -> ECONANA M20207 D00069 -> ECOUVRD2 D00069 D00087 -> BACXYNAA D00087 ------------------------------------------------------------------------------ Table 3. Part of the contents in the file 'ddbjbct.aut'. For each author name given on the left to the arrow, the corresponding locus name and primary accession number are respectively listed on the right. They are arranged in the alphabetical order of the author names. ------------------------------------------------------------------------------ Aan,F. -> STYCRR X05210 Aan,F. -> STYENZI M76176 Aaronson,W. -> ECOKPSD M64977 Aaronson,W. -> ECONEUA J05023 Abad-Lapuebla,M.A. -> VIBTDHI D90238 Abdel-Mawgood,A.L. -> CYAPSBHA X16394 Abdel-Meguid,S.S. -> TRNGDRECM J01843 Abdelal,A. -> STYCARA M36540 Abdelal,A. -> STYCARAB X13200 Abdelal,A.H. -> PSENOSA M60717 ------------------------------------------------------------------------------ Table 4. Part of the short directory in DDBJ style in the file 'ddbjbct.dir'. For each locus name given in the first column, the corresponding primary accession number, molecular type, number of nucleotide pairs, and description for the locus are respectively listed. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ ABCAARAA M34830 ds-DNA 1624 A.aceti acetic acid resistance protein (aarA) gene, complete cds. ABCADHCC D00635 ds-DNA 4230 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. ABCALDH D00521 ds-DNA 2683 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. ABCBCSAA M37202 ds-DNA 9540 A.xylinum bcs B, bcs C and bcs D genes, complete cds and bcs A gene, partial cds. ABCCELA M76548 ds-DNA 1165 Acetobacter xylinum UDP pyrophosphorylase (celA) gene, complete cds. ABCCELSYN X54676 ds-DNA 5363 A. xylinum gene for cellulose biosynthesis ABCIS1380 D10043 ds-DNA 1665 A.pasteurianus insertion sequence IS1380. ACAADH1 D90004 ds-DNA 2467 Acetobacter aceti(K6033) alcohol dehydrogenase subunit gene(adh1). ACCAAC2 M62833 ds-DNA 1123 Acinetobacter baumannii aminoglycoside acetyltr ansferase (aac2) gene, complete cds. ACCACEAA M62822 ds-DNA 1874 A.baumannii chloramphenicol acetyltransferase (cat) gene, complete cds. ------------------------------------------------------------------------------ Table 5. Part of the contents in the file 'ddbjbct.idx'. The first column refers to the locus name, second column to the starting site of the locus in byte, and third to its ending site in byte. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ %***************************** #ABCAARAA 0 3211 #ABCADHCC 3212 10608 #ABCALDH 10609 15864 #ABCBCSAA 15865 29583 #ABCCELA 29584 32289 #ABCCELSYN 32290 40960 #ABCIS1380 40961 44711 #ACAADH1 44712 49357 #ACCAAC2 49358 52395 ------------------------------------------------------------------------------ Table 6. Part of the contents in the file 'ddbjbct.jou'. This gives information on the journal in which sequence data were published. ------------------------------------------------------------------------------ (in) Chaloupka,J. and Krumphanzl,V. (Eds.); Extracellular Enzymes of Microorganisms: 129-137, Plenum Press, New York (1987) -> BACAMYABS M57457 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16S M55011 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SA M55006 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SB M55008 (in) Hoch,J.A. and Setlow,P. (Eds.); Molecular Biology of Microbial Differentiation: 85-94, American Society for Microbiology, Washington, DC (1985) -> BACSPOII M57606 (in) Holmgren,A. (Ed.); Thioredoxin and Glutaredoxin Systems: Structure and Function: 11-19, Unknown name, Unknown city (1986) -> ECOTRXA1 M54881 (in) Kjeldgaard,N.C. and Maaloe,O. (Eds.); Control of ribosome synthesis: 138-143, Academic Press, New York (1976) -> ECOLAC J01636 (in) Losick,R. and Chamberlin,M. (Eds.); RNA polymerase: 455-472, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1976) -> ECOTGY1 K01197 (in) Sikes,C.S. and Wheeler,A.P. (Eds.); Surface reactive peptides and polymers. Discovery and commercialization.: 186-200, American Chemical Society, Washington, D.C. (1991) -> ECOTGP J01714 (in) Sund,H. and Blauer,G. (Eds.); Protein-Ligand Interactions: 193-207, Walter de Gruyter, New York (1975) -> ECOLAC J01636 (in) Wu,R. and Grossman,L. (Eds.); Methods in Enzymology, Recombinant DNA, part E: In press, Academic Press, New York, N.Y. (1986) -> PLMCG M11320 Acta Microbiol. Pol. 35, 175-190 (1986) -> ECOTGG1 M54893 Actinomycetologica 5, 14-17 (1991) -> STMARGG D00799 Adv. Biophys. 21, 115-133 (1986) -> R10REP M26840 Adv. Biophys. 21, 175-192 (1986) -> ECONUSAA M26839 Adv. Enzyme Regul. 21, 225-237 (1983) -> ECOPURFA M26893 Adv. Exp. Med. Biol. 195, 239-246 (1986) -> ECOAPT M14040 Agric. Biol. Chem. 50, 2155-2158 (1986) -> ECONANA M20207 Agric. Biol. Chem. 50, 2771-2778 (1986) -> BRLAM330 D00038 Agric. Biol. Chem. 51, 2019-2022 (1987) -> BACCGT D00129 Agric. Biol. Chem. 51, 2641-2648 (1987) -> STRSAGP D00219 Agric. Biol. Chem. 51, 2807-2809 (1987) -> BACPGECR M35503 Agric. Biol. Chem. 51, 3133-3135 (1987) -> BACXYLAP D00312 Agric. Biol. Chem. 51, 455-463 (1987) -> BACHDCRY D00117 Agric. Biol. Chem. 51, 953-955 (1987) -> BACXYNAA D00087 Agric. Biol. Chem. 52, 1565-1573 (1988) -> BACIP135 D00348 Agric. Biol. Chem. 52, 1785-1789 (1988) -> BACTMR D00343 Agric. Biol. Chem. 52, 2243-2246 (1988) -> PSEGI D00342 Agric. Biol. Chem. 52, 399-406 (1988) -> BACAMYEB M35517 Agric. Biol. Chem. 52, 479-487 (1988) -> ECAPALI D00217 ------------------------------------------------------------------------------ Table 7. Part of the contents in the file 'ddbjbct.key'. For the locus and accession number respectively given on the right to the arrow, the corresponding key words are listed on the left. ------------------------------------------------------------------------------ A.aceti acetic acid resistance protein (aarA) gene, complete cds. -> ABCAARAA M34830 acetic acid resistance protein. -> ABCAARAA M34830 Cloning of genes responsible for acetic acid resistance in acetobacter aceti -> ABCAARAA M34830 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. -> ABCADHCC D00635 alcohol dehydrogenase; cytochrome c. -> ABCADHCC D00635 Cloning and sequencing of the gene cluster encoding two subunits of membrane- bound alcohol dehydrogenase from Acetobacter polyoxogenes -> ABCADHCC D00635 These data kindly submitted in computer readable form by: Toshimi Tamaki Nakano Central Biochemical Institute 2-6 Nakamura-cho Handa-shi, Aichi-ken 475 Japan Phone: 0569-21-3331 Fax: 0569-23-8486 -> ABCADHCC D00635 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. -> ABCALDH D00521 aldehyde dehydrogenase gene; ethanol oxidation; membrane-bound enzyme. -> ABCALDH D00521 Nucleotide sequence of the membrane-bound aldehyde dehydrogenase gene from Acetobacter polyoxogenes -> ABCALDH D00521 ------------------------------------------------------------------------------ Table 8. Part of the contents in the file 'ddbjbct.org'. For the locus and accession number respectively given on the right to the arrow, the corresponding taxonomic names are listed on the left. They are arranged in the alphabetical order of the species names. ------------------------------------------------------------------------------ A. nidulans 6301 DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRUBPS X00019 A. nidulans DNA, clone pAN4. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGGX X00343 A. nidulans DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGG X00512 A. polyoxogenes genomic DNA. Acetobacter polyoxogenes Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. - > ABCADHCC D00635 A. quadruplicatum (strain PR-6) DNA, clone pAQPR1. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUPCAB K02660 A. quadruplicatum (strain PR6) DNA. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUCPCAB K02659 A. vinelandii DNA. Azotobacter vinelandii Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> AVINIFUSV M17349 A.aceti (strain 10-8) DNA, clone pAR1611. Acetobacter aceti Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> ABCAARAA M34830 A.actinomycetemcomitans (strain JP2) DNA, clone lambda-OP8. Actinobacillus actinomycetemcomitans Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Pasteurellaceae. -> ACNLKTXN M27399 A.anitratum DNA, clone pLJD1. Acinetobacter anitratum Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Neisseriaceae. -> ACCCITSYN M33037 ------------------------------------------------------------------------------ Table 9. Part of the short directory file in DDBJ style in the file 'ddbjbct.sdr'. The short directory file contains brief descriptions of all of the sequence entries contained in the DDBJ style. ------------------------------------------------------------------------------ ABCAARAA A.aceti acetic acid resistance protein (aarA) gene, complete 1624bp ABCADHCC A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and 4230bp ABCALDH A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, 2683bp ABCBCSABCD A.xylinum bcs A, B, C and D genes, complete cds's. 9540bp ABCCELA Acetobacter xylinum UDP pyrophosphorylase (celA) gene, 1165bp ABCCELSYN A. xylinum gene for cellulose biosynthesis 5363bp ABCIS1380 A.pasteurianus insertion sequence IS1380. 1665bp ACAADH1 Acetobacter aceti(K6033) alcohol dehydrogenase subunit 2467bp ACCAAC2 Acinetobacter baumannii aminoglycoside acetyltransferase 1123bp ACCACEAA A.baumannii chloramphenicol acetyltransferase (cat) gene, 1874bp ACCAPHA6 Acinetobacter baumannii aphA-6 gene. 1170bp ACCBENABCA A.calcoaceticus BenA, BenB, BenC, BenD, and BenE proteins 15922bp ACCCAT Acinetobacter calcoaceticus cat operon. 15922bp ACCCATAM A.calcoaceticus catA and catM genes, encoding catechol 1, 5537bp ACCCHMO Acinetobacter sp. cyclohexanone monooxygenase gene, complete 2128bp ACCCITSYN A.anitratum citrate synthase gene, complete cds. 1895bp ------------------------------------------------------------------------------ In addition to the 9 tables the four following index files are included in this release. These files were prepared irrespective of the 10 categories of taxonomic divisions. Accession number index file Keyword phrase index file Journal citation index file Gene name index file A brief description is given for each file in the following. Table 10. Part of the accession number index file in the 'ddbjacc.idx'. The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00100 PSEASPAA BCT D00100 D00101 RABNP450R MAM D00101 D00102 HUMLTX HUM D00102 D00103 AFARRN5SA BCT D00103 AFRRN5SA BCT X05517 D00104 AFARRN5SB BCT D00104 AFRRN5SB BCT X05518 D00105 AFARRN5S BCT D00105 ASRRN5S BCT X05524 D00106 ACH5SRR BCT D00106 AXRRN5S BCT X05522 AXRRN5SA BCT X05523 D00107 ACH5SRRX BCT D00107 ACRRN5S BCT X05521 ------------------------------------------------------------------------------ Table 11. Part of the keyword phrase index file in the 'ddbjkey.idx'. Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ A CHANNEL DROCHA INV M17155 A COMPONENT SQLCVEA VRL M38183 A LOCUS GORGOGOA3 PRI X54375 GORGOGOA4 PRI X54376 A LOCUS ALLELE GORA0101 PRI X60258 GORA0201 PRI X60259 GORA0401 PRI X60257 GORA0501 PRI X60256 A MULTI-GENE FAMILY RICGLUTE PLN D00584 A PROTEIN MS2AAR PHG M25187 ST1APCS PHG M25396 A SEQUENCE HS5TOA30 VRL D00148 HS5TOA31 VRL D00147 ------------------------------------------------------------------------------ Table 12. Part of the journal citation index file in 'ddbjjou.idx'. The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ ACTA BIOCHIM. BIOPHYS. SIN. 23, 246-253 (1992) HUMPLASINS HUM M98056 ACTA BIOCHIM. BIOPHYS. SIN. 28, 233-239(1996) TKTII PLN X82230 ACTA BIOCHIM. POL. 24, 301-318 (1977) LUPTRFJ PLN K00345 LUPTRFN PLN K00346 ACTA BIOCHIM. POL. 26, 369-381(1979) HVTRNPHE PLN X02683 ACTA BIOCHIM. POL. 29, 143-149 (1982) EMEMTA PLN M32572 EMEMTB PLN M32573 EMEMTC PLN M32574 EMEMTD PLN M32575 EMEMTE PLN M32576 ACTA BIOCHIM. POL. 34, 21-27 (1987) LUPNOSP PLN M32571 ------------------------------------------------------------------------------ Table 13. Part of the gene name index file in 'ddbjgen.idx'. This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ AACC8 STMAACC8 BCT M55426 AACC9 MPUAACC9 BCT M55427 AACT HUMA1ACM PRI K01500 HUMA1ACMA PRI X00947 HUMA1ACMB PRI M18035 HUMAACT1 PRI M18906 HUMAACT2 PRI M22533 HUMAACTA PRI J05176 AAD INTINTORF BCT L06418 LMOMO229D BCT X17478 AAD A1 ENTAAC3VI BCT M88012 AAD9 ENEAAD9A BCT M69221 AADA LMOMO229A BCT X17479 S52249 BCT S52249 SYNAADA SYN M60473 TRNTAAB BCT M55547 TRNTN21CAS BCT M86913 ------------------------------------------------------------------------------ The files in this release are arranged in the following order with non- labeled format. Release note ddbjrel.txt 1185 records Category for bacteria1 19615 entries, 124590948 bases ddbjbct1.seq 4735450 records Category for bacteria2 64357 entries, 111349798 bases ddbjbct2.seq 5179469 records Category for bacteria3 22780 entries, 124867840 bases ddbjbct3.seq 4659980 records Category for bacteria4 37258 entries, 81575073 bases ddbjbct4.seq 3520385 records Category for EST1 (expressed sequence tag), 93358 entries, 34679400 bases ddbjest1.seq 5519868 records Category for EST2 (expressed sequence tag), 96169 entries, 39209973 bases ddbjest2.seq 5559699 records Category for EST3 (expressed sequence tag), 97558 entries, 37846057 bases ddbjest3.seq 5557765 records Category for EST4 (expressed sequence tag), 90861 entries, 27857346 bases ddbjest4.seq 5479856 records Category for EST5 (expressed sequence tag), 97174 entries, 38244028 bases ddbjest5.seq 5574115 records Category for EST6 (expressed sequence tag), 101534 entries, 40249290 bases ddbjest6.seq 5624227 records Category for EST7 (expressed sequence tag), 100376 entries, 38827134 bases ddbjest7.seq 5585614 records Category for EST8 (expressed sequence tag), 99374 entries, 38412825 bases ddbjest8.seq 5560603 records Category for EST9 (expressed sequence tag), 100921 entries, 40001450 bases ddbjest9.seq 5613522 records Category for EST10 (expressed sequence tag), 101568 entries, 39781318 bases ddbjest10.seq 5586961 records Category for EST11 (expressed sequence tag), 99261 entries, 41138185 bases ddbjest11.seq 5546857 records Category for EST12 (expressed sequence tag), 101505 entries, 44213352 bases ddbjest12.seq 5592216 records Category for EST13 (expressed sequence tag), 107858 entries, 43204403 bases ddbjest13.seq 5627910 records Category for EST14 (expressed sequence tag), 103278 entries, 41884421 bases ddbjest14.seq 5583790 records Category for EST15 (expressed sequence tag), 99354 entries, 41670190 bases ddbjest15.seq 5545572 records Category for EST16 (expressed sequence tag), 95099 entries, 42091245 bases ddbjest16.seq 5530551 records Category for EST17 (expressed sequence tag), 101276 entries, 41917529 bases ddbjest17.seq 5613517 records Category for EST18 (expressed sequence tag), 99339 entries, 43647548 bases ddbjest18.seq 5583742 records Category for EST19 (expressed sequence tag), 95336 entries, 40131646 bases ddbjest19.seq 5543433 records Category for EST20 (expressed sequence tag), 100021 entries, 42188436 bases ddbjest20.seq 5569405 records Category for EST21 (expressed sequence tag), 123518 entries, 57325474 bases ddbjest21.seq 5607778 records Category for EST22 (expressed sequence tag), 95104 entries, 70826939 bases ddbjest22.seq 5271150 records Category for EST23 (expressed sequence tag), 121810 entries, 69176853 bases ddbjest23.seq 5375932 records Category for EST24 (expressed sequence tag), 122484 entries, 57628516 bases ddbjest24.seq 5739964 records Category for EST25 (expressed sequence tag), 116856 entries, 55061879 bases ddbjest25.seq 5669194 records Category for EST26 (expressed sequence tag), 89500 entries, 24120982 bases ddbjest26.seq 5541115 records Category for EST27 (expressed sequence tag), 94845 entries, 26137936 bases ddbjest27.seq 5568302 records Category for EST28 (expressed sequence tag), 66777 entries, 19476835 bases ddbjest28.seq 5260405 records Category for EST29 (expressed sequence tag), 59098 entries, 16458825 bases ddbjest29.seq 5205486 records Category for EST30 (expressed sequence tag), 58890 entries, 15557543 bases ddbjest30.seq 5203010 records Category for EST31 (expressed sequence tag), 115711 entries, 50209036 bases ddbjest31.seq 5722069 records Category for EST32 (expressed sequence tag), 112307 entries, 53513219 bases ddbjest32.seq 5540742 records Category for EST33 (expressed sequence tag), 95428 entries, 48900102 bases ddbjest33.seq 5296204 records Category for EST34 (expressed sequence tag), 117125 entries, 60387599 bases ddbjest34.seq 5532084 records Category for EST35 (expressed sequence tag), 115342 entries, 56469300 bases ddbjest35.seq 5605079 records Category for EST36 (expressed sequence tag), 91869 entries, 38630673 bases ddbjest36.seq 5469829 records Category for EST37 (expressed sequence tag), 95526 entries, 42631532 bases ddbjest37.seq 5499390 records Category for EST38 (expressed sequence tag), 94650 entries, 39578155 bases ddbjest38.seq 5499144 records Category for EST39 (expressed sequence tag), 107775 entries, 42781577 bases ddbjest39.seq 5751017 records Category for EST40 (expressed sequence tag), 91718 entries, 37058897 bases ddbjest40.seq 5522267 records Category for EST41 (expressed sequence tag), 88576 entries, 40085197 bases ddbjest41.seq 5418762 records Category for EST42 (expressed sequence tag), 101331 entries, 45974152 bases ddbjest42.seq 5656288 records Category for EST43 (expressed sequence tag), 97654 entries, 40460610 bases ddbjest43.seq 5568210 records Category for EST44 (expressed sequence tag), 101377 entries, 38072308 bases ddbjest44.seq 5640237 records Category for EST45 (expressed sequence tag), 90811 entries, 38336862 bases ddbjest45.seq 5476512 records Category for EST46 (expressed sequence tag), 59265 entries, 16546440 bases ddbjest46.seq 5146709 records Category for EST47 (expressed sequence tag), 58087 entries, 18063032 bases ddbjest47.seq 5118536 records Category for EST48 (expressed sequence tag), 59043 entries, 17705563 bases ddbjest48.seq 5104466 records Category for EST49 (expressed sequence tag), 58759 entries, 18819198 bases ddbjest49.seq 5111786 records Category for EST50 (expressed sequence tag), 58670 entries, 18000621 bases ddbjest50.seq 5124261 records Category for EST51 (expressed sequence tag), 58854 entries, 17868296 bases ddbjest51.seq 5116940 records Category for EST52 (expressed sequence tag), 59833 entries, 17536129 bases ddbjest52.seq 5111035 records Category for EST53 (expressed sequence tag), 60204 entries, 18999879 bases ddbjest53.seq 5095957 records Category for EST54 (expressed sequence tag), 59714 entries, 19174531 bases ddbjest54.seq 5103511 records Category for EST55 (expressed sequence tag), 60273 entries, 19808183 bases ddbjest55.seq 5237632 records Category for EST56 (expressed sequence tag), 55646 entries, 33712858 bases ddbjest56.seq 5103523 records Category for EST57 (expressed sequence tag), 53149 entries, 22039795 bases ddbjest57.seq 5056015 records Category for EST58 (expressed sequence tag), 53055 entries, 24065253 bases ddbjest58.seq 5042896 records Category for EST59 (expressed sequence tag), 53326 entries, 22176333 bases ddbjest59.seq 5052756 records Category for EST60 (expressed sequence tag), 64727 entries, 26528236 bases ddbjest60.seq 5165893 records Category for EST61 (expressed sequence tag), 99284 entries, 42088906 bases ddbjest61.seq 5665523 records Category for EST62 (expressed sequence tag), 97435 entries, 40588452 bases ddbjest62.seq 5558044 records Category for EST63 (expressed sequence tag), 101614 entries, 56965469 bases ddbjest63.seq 5533722 records Category for EST64 (expressed sequence tag), 102518 entries, 56238592 bases ddbjest64.seq 5529600 records Category for EST65 (expressed sequence tag), 101596 entries, 48821271 bases ddbjest65.seq 5597127 records Category for EST66 (expressed sequence tag), 95005 entries, 54109669 bases ddbjest66.seq 5447012 records Category for EST67 (expressed sequence tag), 96105 entries, 45214361 bases ddbjest67.seq 5528173 records Category for EST68 (expressed sequence tag), 94157 entries, 51076699 bases ddbjest68.seq 5477726 records Category for EST69 (expressed sequence tag), 102087 entries, 59640907 bases ddbjest69.seq 5563072 records Category for EST70 (expressed sequence tag), 87498 entries, 44427440 bases ddbjest70.seq 5415758 records Category for EST71 (expressed sequence tag), 96989 entries, 50691730 bases ddbjest71.seq 5519802 records Category for EST72 (expressed sequence tag), 95350 entries, 61504267 bases ddbjest72.seq 5453331 records Category for EST73 (expressed sequence tag), 93053 entries, 60374959 bases ddbjest73.seq 5403664 records Category for EST74 (expressed sequence tag), 94860 entries, 42035334 bases ddbjest74.seq 5577819 records Category for EST75 (expressed sequence tag), 91605 entries, 42325933 bases ddbjest75.seq 5481325 records Category for EST76 (expressed sequence tag), 87360 entries, 49782315 bases ddbjest76.seq 5360205 records Category for EST77 (expressed sequence tag), 91174 entries, 54733085 bases ddbjest77.seq 5442311 records Category for EST78 (expressed sequence tag), 97629 entries, 45714126 bases ddbjest78.seq 5572454 records Category for EST79 (expressed sequence tag), 98080 entries, 40522585 bases ddbjest79.seq 5583263 records Category for EST80 (expressed sequence tag), 97957 entries, 43706744 bases ddbjest80.seq 5570059 records Category for EST81 (expressed sequence tag), 92058 entries, 45154744 bases ddbjest81.seq 5438959 records Category for EST82 (expressed sequence tag), 100097 entries, 59502601 bases ddbjest82.seq 5487189 records Category for EST83 (expressed sequence tag), 104543 entries, 58202127 bases ddbjest83.seq 5531252 records Category for EST84 (expressed sequence tag), 89613 entries, 57004972 bases ddbjest84.seq 5388192 records Category for EST85 (expressed sequence tag), 95774 entries, 61832762 bases ddbjest85.seq 5467976 records Category for EST86 (expressed sequence tag), 91772 entries, 58046085 bases ddbjest86.seq 5351126 records Category for EST87 (expressed sequence tag), 96989 entries, 57060109 bases ddbjest87.seq 5472618 records Category for EST88 (expressed sequence tag), 98442 entries, 64464109 bases ddbjest88.seq 5542798 records Category for EST89 (expressed sequence tag), 96148 entries, 64657726 bases ddbjest89.seq 5409456 records Category for EST90 (expressed sequence tag), 102332 entries, 55190662 bases ddbjest90.seq 5618451 records Category for EST91 (expressed sequence tag), 100123 entries, 37989325 bases ddbjest91.seq 5630043 records Category for EST92 (expressed sequence tag), 106311 entries, 62829177 bases ddbjest92.seq 5579176 records Category for EST93 (expressed sequence tag), 99312 entries, 58911851 bases ddbjest93.seq 5545731 records Category for EST94 (expressed sequence tag), 85906 entries, 41931864 bases ddbjest94.seq 5459979 records Category for EST95 (expressed sequence tag), 92537 entries, 52022362 bases ddbjest95.seq 5443709 records Category for EST96 (expressed sequence tag), 88643 entries, 49274246 bases ddbjest96.seq 5431892 records Category for EST97 (expressed sequence tag), 94660 entries, 56330376 bases ddbjest97.seq 5510839 records Category for EST98 (expressed sequence tag), 90803 entries, 56611181 bases ddbjest98.seq 5394635 records Category for EST99 (expressed sequence tag), 94736 entries, 53717676 bases ddbjest99.seq 5433229 records Category for EST100 (expressed sequence tag), 90755 entries, 55654844 bases ddbjest100.seq 5418133 records Category for EST101 (expressed sequence tag), 84393 entries, 47636585 bases ddbjest101.seq 5288419 records Category for EST102 (expressed sequence tag), 119486 entries, 65287215 bases ddbjest102.seq 5733457 records Category for EST103 (expressed sequence tag), 96461 entries, 52990262 bases ddbjest103.seq 5443277 records Category for EST104 (expressed sequence tag), 122496 entries, 64215957 bases ddbjest104.seq 5696915 records Category for EST105 (expressed sequence tag), 110784 entries, 63921967 bases ddbjest105.seq 5563858 records Category for EST106 (expressed sequence tag), 87712 entries, 45942589 bases ddbjest106.seq 5428627 records Category for EST107 (expressed sequence tag), 81508 entries, 37789074 bases ddbjest107.seq 5334913 records Category for EST108 (expressed sequence tag), 76755 entries, 39155302 bases ddbjest108.seq 5255640 records Category for EST109 (expressed sequence tag), 82405 entries, 40390609 bases ddbjest109.seq 5366486 records Category for EST110 (expressed sequence tag), 90589 entries, 60257087 bases ddbjest110.seq 5418921 records Category for EST111 (expressed sequence tag), 89109 entries, 58597237 bases ddbjest111.seq 5397180 records Category for EST112 (expressed sequence tag), 102726 entries, 59701395 bases ddbjest112.seq 5701606 records Category for EST113 (expressed sequence tag), 78091 entries, 40078789 bases ddbjest113.seq 5329794 records Category for EST114 (expressed sequence tag), 85796 entries, 50383381 bases ddbjest114.seq 5421589 records Category for EST115 (expressed sequence tag), 87320 entries, 48134974 bases ddbjest115.seq 5416049 records Category for EST116 (expressed sequence tag), 81966 entries, 52853785 bases ddbjest116.seq 5315807 records Category for EST117 (expressed sequence tag), 93743 entries, 59108868 bases ddbjest117.seq 5363127 records Category for EST118 (expressed sequence tag), 90159 entries, 50224827 bases ddbjest118.seq 5421186 records Category for EST119 (expressed sequence tag), 81999 entries, 53148295 bases ddbjest119.seq 5343005 records Category for EST120 (expressed sequence tag), 91864 entries, 40541864 bases ddbjest120.seq 5499592 records Category for EST121 (expressed sequence tag), 99776 entries, 52264498 bases ddbjest121.seq 5590775 records Category for EST122 (expressed sequence tag), 123350 entries, 48515445 bases ddbjest122.seq 5716847 records Category for EST123 (expressed sequence tag), 113512 entries, 37400602 bases ddbjest123.seq 5773317 records Category for EST124 (expressed sequence tag), 94654 entries, 34674979 bases ddbjest124.seq 5563476 records Category for EST125 (expressed sequence tag), 96633 entries, 34450335 bases ddbjest125.seq 5536504 records Category for EST126 (expressed sequence tag), 102844 entries, 35454350 bases ddbjest126.seq 5690006 records Category for EST127 (expressed sequence tag), 95457 entries, 37015367 bases ddbjest127.seq 5534663 records Category for EST128 (expressed sequence tag), 80770 entries, 30871101 bases ddbjest128.seq 4663472 records Category for GSS1 (genome survey sequence), 102378 entries, 76710624 bases ddbjgss1.seq 5644018 records Category for GSS2 (genome survey sequence), 102527 entries, 72048789 bases ddbjgss2.seq 5647358 records Category for GSS3 (genome survey sequence), 105483 entries, 78614147 bases ddbjgss3.seq 5242013 records Category for GSS4 (genome survey sequence), 85096 entries, 71067495 bases ddbjgss4.seq 5225840 records Category for GSS5 (genome survey sequence), 83119 entries, 74959616 bases ddbjgss5.seq 5197767 records Category for GSS6 (genome survey sequence), 79940 entries, 64985859 bases ddbjgss6.seq 5130815 records Category for GSS7 (genome survey sequence), 117637 entries, 53459488 bases ddbjgss7.seq 5770708 records Category for GSS8 (genome survey sequence), 120132 entries, 52430800 bases ddbjgss8.seq 6010840 records Category for GSS9 (genome survey sequence), 112401 entries, 54921069 bases ddbjgss9.seq 5899371 records Category for GSS10 (genome survey sequence), 105312 entries, 55318896 bases ddbjgss10.seq 5828415 records Category for GSS11 (genome survey sequence), 103656 entries, 51611550 bases ddbjgss11.seq 5795843 records Category for GSS12 (genome survey sequence), 101803 entries, 51978115 bases ddbjgss12.seq 5763697 records Category for GSS13 (genome survey sequence), 97543 entries, 49119516 bases ddbjgss13.seq 5664832 records Category for GSS14 (genome survey sequence), 100063 entries, 56307987 bases ddbjgss14.seq 5678411 records Category for GSS15 (genome survey sequence), 92469 entries, 49493897 bases ddbjgss15.seq 5550764 records Category for GSS16 (genome survey sequence), 97673 entries, 49468808 bases ddbjgss16.seq 5649516 records Category for GSS17 (genome survey sequence), 94846 entries, 42808810 bases ddbjgss17.seq 5663760 records Category for GSS18 (genome survey sequence), 98805 entries, 52185717 bases ddbjgss18.seq 5679921 records Category for GSS19 (genome survey sequence), 95001 entries, 50238372 bases ddbjgss19.seq 5649117 records Category for GSS20 (genome survey sequence), 79264 entries, 38426879 bases ddbjgss20.seq 5407259 records Category for GSS21 (genome survey sequence), 75680 entries, 37216569 bases ddbjgss21.seq 5349482 records Category for GSS22 (genome survey sequence), 78678 entries, 34375338 bases ddbjgss22.seq 5406578 records Category for GSS23 (genome survey sequence), 85009 entries, 49724827 bases ddbjgss23.seq 5402060 records Category for GSS24 (genome survey sequence), 77572 entries, 43051656 bases ddbjgss24.seq 5357307 records Category for GSS25 (genome survey sequence), 93549 entries, 46464135 bases ddbjgss25.seq 5649569 records Category for GSS26 (genome survey sequence), 77337 entries, 32890095 bases ddbjgss26.seq 5380798 records Category for GSS27 (genome survey sequence), 92736 entries, 44229932 bases ddbjgss27.seq 5603946 records Category for GSS28 (genome survey sequence), 81883 entries, 44092999 bases ddbjgss28.seq 5427714 records Category for GSS29 (genome survey sequence), 99152 entries, 53929655 bases ddbjgss29.seq 5782697 records Category for GSS30 (genome survey sequence), 94657 entries, 57940927 bases ddbjgss30.seq 5592655 records Category for GSS31 (genome survey sequence), 104685 entries, 54235133 bases ddbjgss31.seq 5887693 records Category for GSS32 (genome survey sequence), 105237 entries, 57178390 bases ddbjgss32.seq 5825753 records Category for GSS33 (genome survey sequence), 123922 entries, 82324688 bases ddbjgss33.seq 6010639 records Category for GSS34 (genome survey sequence), 117909 entries, 66798193 bases ddbjgss34.seq 5910038 records Category for GSS35 (genome survey sequence), 116918 entries, 64923579 bases ddbjgss35.seq 5864389 records Category for GSS36 (genome survey sequence), 120118 entries, 56456614 bases ddbjgss36.seq 6043146 records Category for GSS37 (genome survey sequence), 34782 entries, 15216368 bases ddbjgss37.seq 1716437 records Category for HTC (high throughput cDNA), 29019 entries, 33465774 bases ddbjhtc.seq 2949459 records Category for HTG1 (high throughput genome sequence), 1576 entries, 228399640 bases ddbjhtg1.seq 3991889 records Category for HTG2 (high throughput genome sequence), 3357 entries, 225620691 bases ddbjhtg2.seq 4019627 records Category for HTG3 (high throughput genome sequence), 2534 entries, 225296749 bases ddbjhtg3.seq 4017998 records Category for HTG4 (high throughput genome sequence), 2406 entries, 227064551 bases ddbjhtg4.seq 4008358 records Category for HTG5 (high throughput genome sequence), 1548 entries, 225626172 bases ddbjhtg5.seq 4010971 records Category for HTG6 (high throughput genome sequence), 1472 entries, 225785925 bases ddbjhtg6.seq 4011340 records Category for HTG7 (high throughput genome sequence), 1481 entries, 225362492 bases ddbjhtg7.seq 4014221 records Category for HTG8 (high throughput genome sequence), 1535 entries, 225300360 bases ddbjhtg8.seq 4014553 records Category for HTG9 (high throughput genome sequence), 1306 entries, 228691475 bases ddbjhtg9.seq 3991916 records Category for HTG10 (high throughput genome sequence), 1680 entries, 224884583 bases ddbjhtg10.seq 4014303 records Category for HTG11 (high throughput genome sequence), 1574 entries, 227025103 bases ddbjhtg11.seq 3995241 records Category for HTG12 (high throughput genome sequence), 1533 entries, 222462246 bases ddbjhtg12.seq 4004609 records Category for HTG13 (high throughput genome sequence), 1618 entries, 221547414 bases ddbjhtg13.seq 4007768 records Category for HTG14 (high throughput genome sequence), 1638 entries, 222081161 bases ddbjhtg14.seq 4007860 records Category for HTG15 (high throughput genome sequence), 2625 entries, 212199619 bases ddbjhtg15.seq 4083755 records Category for HTG16 (high throughput genome sequence), 2316 entries, 215318763 bases ddbjhtg16.seq 4063054 records Category for HTG17 (high throughput genome sequence), 1705 entries, 221755570 bases ddbjhtg17.seq 4013866 records Category for HTG18 (high throughput genome sequence), 1601 entries, 222392775 bases ddbjhtg18.seq 4011170 records Category for HTG19 (high throughput genome sequence), 1616 entries, 222377981 bases ddbjhtg19.seq 4011905 records Category for HTG20 (high throughput genome sequence), 1614 entries, 221503191 bases ddbjhtg20.seq 4013933 records Category for HTG21 (high throughput genome sequence), 1705 entries, 220861477 bases ddbjhtg21.seq 4019867 records Category for HTG22 (high throughput genome sequence), 1990 entries, 219182925 bases ddbjhtg22.seq 4033715 records Category for HTG23 (high throughput genome sequence), 1914 entries, 220025821 bases ddbjhtg23.seq 4029577 records Category for HTG24 (high throughput genome sequence), 1856 entries, 220126463 bases ddbjhtg24.seq 4026198 records Category for HTG25 (high throughput genome sequence), 1748 entries, 222656014 bases ddbjhtg25.seq 4015101 records Category for HTG26 (high throughput genome sequence), 1560 entries, 225168108 bases ddbjhtg26.seq 4004905 records Category for HTG27 (high throughput genome sequence), 1495 entries, 227393128 bases ddbjhtg27.seq 4004691 records Category for HTG28 (high throughput genome sequence), 1227 entries, 231890555 bases ddbjhtg28.seq 3970220 records Category for HTG29 (high throughput genome sequence), 1321 entries, 230883166 bases ddbjhtg29.seq 3976235 records Category for HTG30 (high throughput genome sequence), 1566 entries, 231574343 bases ddbjhtg30.seq 3972613 records Category for HTG31 (high throughput genome sequence), 220 entries, 24832489 bases ddbjhtg31.seq 426291 records Category for human1, 8843 entries, 199244520 bases ddbjhum1.seq 4337732 records Category for human2, 1602 entries, 214507522 bases ddbjhum2.seq 4193415 records Category for human3, 1492 entries, 213142000 bases ddbjhum3.seq 4204102 records Category for human4, 1370 entries, 209023331 bases ddbjhum4.seq 4259651 records Category for human5, 1450 entries, 214881018 bases ddbjhum5.seq 4189792 records Category for human6, 1528 entries, 202057430 bases ddbjhum6.seq 4326312 records Category for human7, 1636 entries, 210431121 bases ddbjhum7.seq 4242284 records Category for human8, 1678 entries, 207761142 bases ddbjhum8.seq 4273898 records Category for human9, 35586 entries, 167257487 bases ddbjhum9.seq 4713609 records Category for human10, 53844 entries, 140501360 bases ddbjhum10.seq 4802840 records Category for human11, 3907 entries, 203514308 bases ddbjhum11.seq 4167580 records Category for human12, 2591 entries, 214402640 bases ddbjhum12.seq 4087822 records Category for human13, 2403 entries, 216807099 bases ddbjhum13.seq 4068233 records Category for human14, 2731 entries, 219777335 bases ddbjhum14.seq 4056339 records Category for human15, 12649 entries, 201334991 bases ddbjhum15.seq 4297677 records Category for human16, 79351 entries, 104388683 bases ddbjhum16.seq 5360536 records Category for human17, 2988 entries, 29884925 bases ddbjhum17.seq 708111 records Category for invertebrates1, 7929 entries, 215654987 bases ddbjinv1.seq 4093006 records Category for invertebrates2, 25249 entries, 170251889 bases ddbjinv2.seq 4486366 records Category for invertebrates3, 72387 entries, 104797371 bases ddbjinv3.seq 5186424 records Category for invertebrates4, 20837 entries, 85174462 bases ddbjinv4.seq 2709201 records Category for mammals, 40075 entries, 42354588 bases ddbjmam.seq 2358589 records Category for patents1, 241275 entries, 96944988 bases ddbjpat1.seq 6478734 records Category for patents2, 174708 entries, 104949940 bases ddbjpat2.seq 5770145 records Category for patents3, 158289 entries, 105852160 bases ddbjpat3.seq 5893465 records Category for patents4, 51735 entries, 12328256 bases ddbjpat4.seq 1195793 records Category for phages, 2137 entries, 6804613 bases ddbjphg.seq 298049 records Category for plants1, 29761 entries, 161637105 bases ddbjpln1.seq 4557886 records Category for plants2, 90277 entries, 97888520 bases ddbjpln2.seq 5410922 records Category for plants3, 32350 entries, 158635037 bases ddbjpln3.seq 4593233 records Category for plants4, 65918 entries, 103591303 bases ddbjpln4.seq 5122395 records Category for plants5, 1563 entries, 5465332 bases ddbjpln5.seq 195890 records Category for primates, 15071 entries, 23440784 bases ddbjpri.seq 1064210 records Category for rodents1, 33437 entries, 172900050 bases ddbjrod1.seq 4597599 records Category for rodents2, 31764 entries, 177335547 bases ddbjrod2.seq 4507684 records Category for rodents3, 18181 entries, 22430547 bases ddbjrod3.seq 1198537 records Category for STS (sequence tagged site), 117735 entries, 47202170 bases ddbjsts.seq 6968383 records Category for synthetic DNAs, 6700 entries, 12693128 bases ddbjsyn.seq 528488 records Category for unannotated sequences, 557 entries, 323150 bases ddbjuna.seq 26082 records Category for viruses1, 91445 entries, 75579117 bases ddbjvrl1.seq 5618304 records Category for viruses2, 63194 entries, 61079089 bases ddbjvrl2.seq 3978001 records Category for vertebrates, 75957 entries, 84721516 bases ddbjvrt.seq 4644347 records Accession number index file ddbjacc.idx 17294390 records Keyword phrase index file ddbjkey.idx 6073127 records Journal citation index file ddbjjou.idx 9805102 records Gene name index file ddbjgen.idx 961626 records