DNA Data Bank of Japan DNA Database Release 52, Dec. 2002, including 20,354,812 entries, 26,931,456,316 bases This database may be copied and redistributed without permission on the condition that all the statements in this release note are reproduced in each copy. The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank, and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of Nov. 17, 2002. This unified database was made possible thanks to the international collaboration among the three data banks. All the entries have accordingly been annotated using the feature keys common to them. All the entries designated by the accession numbers with the prefixes "C", "D", "E", "AB", "AG", "AK", "AP", "AT", "AU", "AV", "BA", "BB", "BD", "BJ", "BP" and "BW" have been collected and processed by DDBJ, and the rest have been prepared by GenBank and EMBL/EBI. There have been a number of genome projects going on worldwide. Among them human genome projects have probably been most productive and yielded a large number of ordinary sequences, huge amounts of ESTs and quantities of genome sequences. Thus, we have the human(HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. Note that the EST division also contains human sequences. The present release does not have the ORG division. Thus, if you are interested in human mitochondrial sequences, for example, you are now advised to refer to the HUM division. The HUM division in this release was recorded in 19 files each of which had 300 MB storage capacity. Incidentally, the BCT, INV, PLN, PAT, VRL and ROD divisions were recorded in 5, 4, 5, 5, 2, 5 files, respectively. This release also includes a division (PAT) for patent data. The patent data are those which the Japanese Patent Office (JPO), United States Patent and Trademark Office (USPTO), and the European Patent Office (EPO) collected and processed. The accession numbers of the patent data collected by the Japanese Patent Office start with the prefix "E" and "BD", those collected and supplied by USPTO and GenBank respectively start with "I" and "AR", and those collected and supplied by EPO and EMBL/EBI respectively start with "A" and "AX". The entries with the prefixes "I", "AR", "A", "AX", "E" and "BD" were allocated to five files (ddbjpat1.seq _ ddbjpat5.seq) in the DDBJ format. Note also that unauthorized use of the patent data may cause legal issues for which we take no responsibility. In the present release, the SOURCE in the flat file was revisited and revised if necessary in accordance with the unified taxonomy database common to the three data banks. The number of ESTs has been increasing at an enormous rate and is expected to be growing even more rapidly in the future. Therefore, EST data were stored in 150 files each of which had the same storage capacity as the file of the HUM division. The present release includes the GSS division. GSS stands for the Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. This division was recorded in 43 files similarly to the HUM division. This release also includes the High Throughput Genomic Sequence (HTGS), which comes mainly from genome project teams which deal with a clone as a sequencing unit. HTGS in this release were recorded in 47 files similarly to the HUM division. The index files are not presented in this release except for ddbjacc.idx, ddbjgen.idx, ddbjjou.idx, and ddbjkey.idx. Instead, we have included a program by which to make the index files not presented in this release. For the use of the program, see the files, seq2indexes.doc, seq2indexes.c, and seq2indexes.h in this release. The present release contains amino acid sequences that were translated from the corresponding nucleotide sequences in our database. In the translation we paid much attention to the fact that some species or organella have a codon different from the universal one, and used the proper codon table. If you find an incorrect codon in a translated sequence, please let us know. The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence (see Table 1). It is expressed like AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. We terminated the RNA division. The RNA data were redistributed according to the category of the organism. Therefore, you will find a human RNA sequence, for example, in the HUM division. The present release includes a division, CON. The CON division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. The current number of the entries of this division is 10,229. The present release also includes, HTC (High Throughput cDNA). The definition of the HTC division is as follows. This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. From this release 51, TPA (Third Party Annotation) data were available. According to international collaborative meeting of three data banks, '/sequenced_mol' qualifier will be changed into '/mol_type' one which is required for all entries. From now, we are retrofitting all of entries by degree, and it will be completed at DDBJ release 54 (May 2003). This release is published by the following DDBJ staff. General administration T. Gojobori, Y. Fukuma, Y. Katsube, C. Maruyama, K. Okuda, K. Okuno, H. Tsutsui (hold), Y. Ueda, T. Umezawa, A. Watanabe Database construction Y. Tateno, S. Miyazaki, Y. Suzuki, H. Aono, M. Ejima, N. Endo, M. Gojobori, A. Hashizume, T. Kosuge, J. Mashima, N. Murakata, M. Okaneya, T. Okido, K. Sakai, M. Suzuki, H. Tsutsui, T. Yazaki Database software development and management H. Sugawara, S. Miyazaki (hold), Y. Fujisawa, H. Hashimoto, T. Iizuka (hold), N. Ishizaka, T. Kato, Ta. Koike, To. Koike, S. Kuroda, K. Mamiya, M. Matsuo, K. Mimura, S. Misu, N. Nishinomiya, Y. Shigemoto, Y. Sugiyama, T. Takaki, K. Watanabe, M. Yamaguchi System management K. Nishikawa, K. Ikeo, N. Hoshi, T. Iizuka, A. Kusakabe, M. Nagura, F. Sugiyama, Y. Sugisaki, K. Yoshioka Editorial and public relations N. Saitou, K. Fukami-Kobayashi, S. Fukuchi, H. Ichikawa, K. Ichikawa, T. Kawamoto, J. Kohira, S. Nagira, Y. Yamamoto Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Mishima 411-8540, Japan Phone: +81 55 981 6853 FAX: +81 55 981 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp/ (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp/ (for DDBJ sequence data submission system) Acknowledgement: We are grateful to NCBI and EMBL/EBI for a firm friendship and an excellent collaboration with us. We also thank the Japanese Patent Office for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ Database Release History Release Date Entries Bases Comments 52 12/02 20,354,812 26,931,456,316 51 09/02 18,401,358 22,782,404,136 50 06/02 17,260,693 20,158,357,982 49 04/02 16,503,157 18,579,627,226 48 01/02 15,016,100 16,197,713,855 47 10/01 13,266,610 14,145,671,645 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------------------------------------------------------------ This release covers 20 categories of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct.*** Category for bacteria ddbjest.*** Category for EST (expressed sequence tag) ddbjcon.*** Category for CON (Contig sequences) ddbjhtc.*** Category for HTC (high throughput cDNA) ddbjhtg.*** Category for HTG (high throughput genomic sequence) ddbjhum.*** Category for human ddbjgss.*** Category for GSS (Genome Survey Sequence) ddbjinv.*** Category for invertebrates ddbjmam.*** Category for mammals other than primates and rodents ddbjpat.*** Category for patents ddbjphg.*** Category for phages ddbjpln.*** Category for plants ddbjpri.*** Category for primates other than human ddbjrod.*** Category for rodents ddbjsts.*** Category for STS (sequence tagged site) ddbjsyn.*** Category for synthetic DNAs ddbjtpa.*** Category for TPA (Third Party Annotation) ddbjuna.*** Category for unannotated sequences ddbjvrl.*** Category for viruses ddbjvrt.*** Category for vertebrates other than mammals ------------------------------------------------------------------------------ Each category then has the following nine files. Note that all the files except for ddbj***.seq are created by the user by use of seq2indexes as mentioned in the release note. ------------------------------------------------------------------------------ ddbj***.seq List of an entry in DDBJ format, see Table 1. ddbj***.acc List of the accession numbers, see Table 2 . ddbj***.aut List of the authors, see Table 3. ddbj***.dir List of the short directory in DDBJ style, see Table 4. ddbj***.idx List of indices, see Table 5. ddbj***.jou List of the journals, see Table 6. ddbj***.key List of the key words, see Table 7. ddbj***.org List of the species names, see Table 8. ddbj***.sdr List of the short directory in DDBJ style, see Table 9. ------------------------------------------------------------------------------ The format of LOCUS line in the flat file was changed as shown below to adjust to the GenBank format from release 51. ------------------------------------------------------------------------------ Old (-rel. 50): LOCUS AB000001 660 bp DNA PLN 01-FEB-2001 Present (rel. 51-): LOCUS AB000001 660 bp DNA linear PLN 01-FEB-2001 New format specification: --------- -------- Positions Contents --------- -------- 01-05 'LOCUS' 06-12 spaces 13-28 Locus name 29-29 space 30-40 Length of sequence, right-justified 41-41 space 42-43 bp 44-44 space 45-47 spaces, ss- (single-stranded), ds- (double-stranded), or ms- (mixed-stranded) 48-53 NA, DNA, RNA, tRNA (transfer RNA), rRNA (ribosomal RNA), mRNA (messenger RNA), uRNA (small nuclear RNA), snRNA, snoRNA. Left justified. 54-55 space 56-63 'linear' followed by two spaces, or 'circular' 64-64 space 65-67 The division code 68-68 space 69-79 Date, in the form dd-MMM-yyyy (e.g., 15-MAR-1991) ------------------------------------------------------------------------------ Table 1. Part of the contents in the file 'ddbjbct.seq'. This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA linear BCT 14-APR-2000 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, Truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli (strain:W3110) cDNA to mRNA. ORGANISM Escherichia coli Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Miki Jishage, National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail:mjishage@lab.nig.ac.jp, Tel:0559-81-6742, Fax:0559-81-6746) REFERENCE 2 (bases 1 to 993) AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol. Gen. Genet. 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /organism="Escherichia coli" /sequenced_mol="cDNA to mRNA" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /transl_table=11 /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK" variation 75 /citation=[3] /replace="t" variation 97 /citation=[3] /replace="t" variation 99 /citation=[3] /replace="t" variation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t 0 others ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ Table 2. Part of the contents in the file 'ddbjbct.acc'. The first column refers to the secondary accession number, second column to the locus name, and third to the primary accession number. The primary number may be the same as the secondary number. They are arranged in the ascending order of the secondary accession numbers. ------------------------------------------------------------------------------ D00001 -> ECOPBPAA X04516 D00002 -> ECOPYRH X04469 D00006 -> PNS981TET D00006 D00020 -> COLE2LYS D00020 D00021 -> COLE31YS D00021 D00038 -> BRLAM330 D00038 D00066 -> BAC139AC D00066 D00067 -> ECONANA M20207 D00069 -> ECOUVRD2 D00069 D00087 -> BACXYNAA D00087 ------------------------------------------------------------------------------ Table 3. Part of the contents in the file 'ddbjbct.aut'. For each author name given on the left to the arrow, the corresponding locus name and primary accession number are respectively listed on the right. They are arranged in the alphabetical order of the author names. ------------------------------------------------------------------------------ Aan,F. -> STYCRR X05210 Aan,F. -> STYENZI M76176 Aaronson,W. -> ECOKPSD M64977 Aaronson,W. -> ECONEUA J05023 Abad-Lapuebla,M.A. -> VIBTDHI D90238 Abdel-Mawgood,A.L. -> CYAPSBHA X16394 Abdel-Meguid,S.S. -> TRNGDRECM J01843 Abdelal,A. -> STYCARA M36540 Abdelal,A. -> STYCARAB X13200 Abdelal,A.H. -> PSENOSA M60717 ------------------------------------------------------------------------------ Table 4. Part of the short directory in DDBJ style in the file 'ddbjbct.dir'. For each locus name given in the first column, the corresponding primary accession number, molecular type, number of nucleotide pairs, and description for the locus are respectively listed. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ ABCAARAA M34830 ds-DNA 1624 A.aceti acetic acid resistance protein (aarA) gene, complete cds. ABCADHCC D00635 ds-DNA 4230 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. ABCALDH D00521 ds-DNA 2683 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. ABCBCSAA M37202 ds-DNA 9540 A.xylinum bcs B, bcs C and bcs D genes, complete cds and bcs A gene, partial cds. ABCCELA M76548 ds-DNA 1165 Acetobacter xylinum UDP pyrophosphorylase (celA) gene, complete cds. ABCCELSYN X54676 ds-DNA 5363 A. xylinum gene for cellulose biosynthesis ABCIS1380 D10043 ds-DNA 1665 A.pasteurianus insertion sequence IS1380. ACAADH1 D90004 ds-DNA 2467 Acetobacter aceti(K6033) alcohol dehydrogenase subunit gene(adh1). ACCAAC2 M62833 ds-DNA 1123 Acinetobacter baumannii aminoglycoside acetyltr ansferase (aac2) gene, complete cds. ACCACEAA M62822 ds-DNA 1874 A.baumannii chloramphenicol acetyltransferase (cat) gene, complete cds. ------------------------------------------------------------------------------ Table 5. Part of the contents in the file 'ddbjbct.idx'. The first column refers to the locus name, second column to the starting site of the locus in byte, and third to its ending site in byte. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ %***************************** #ABCAARAA 0 3211 #ABCADHCC 3212 10608 #ABCALDH 10609 15864 #ABCBCSAA 15865 29583 #ABCCELA 29584 32289 #ABCCELSYN 32290 40960 #ABCIS1380 40961 44711 #ACAADH1 44712 49357 #ACCAAC2 49358 52395 ------------------------------------------------------------------------------ Table 6. Part of the contents in the file 'ddbjbct.jou'. This gives information on the journal in which sequence data were published. ------------------------------------------------------------------------------ (in) Chaloupka,J. and Krumphanzl,V. (Eds.); Extracellular Enzymes of Microorganisms: 129-137, Plenum Press, New York (1987) -> BACAMYABS M57457 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16S M55011 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SA M55006 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SB M55008 (in) Hoch,J.A. and Setlow,P. (Eds.); Molecular Biology of Microbial Differentiation: 85-94, American Society for Microbiology, Washington, DC (1985) -> BACSPOII M57606 (in) Holmgren,A. (Ed.); Thioredoxin and Glutaredoxin Systems: Structure and Function: 11-19, Unknown name, Unknown city (1986) -> ECOTRXA1 M54881 (in) Kjeldgaard,N.C. and Maaloe,O. (Eds.); Control of ribosome synthesis: 138-143, Academic Press, New York (1976) -> ECOLAC J01636 (in) Losick,R. and Chamberlin,M. (Eds.); RNA polymerase: 455-472, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1976) -> ECOTGY1 K01197 (in) Sikes,C.S. and Wheeler,A.P. (Eds.); Surface reactive peptides and polymers. Discovery and commercialization.: 186-200, American Chemical Society, Washington, D.C. (1991) -> ECOTGP J01714 (in) Sund,H. and Blauer,G. (Eds.); Protein-Ligand Interactions: 193-207, Walter de Gruyter, New York (1975) -> ECOLAC J01636 (in) Wu,R. and Grossman,L. (Eds.); Methods in Enzymology, Recombinant DNA, part E: In press, Academic Press, New York, N.Y. (1986) -> PLMCG M11320 Acta Microbiol. Pol. 35, 175-190 (1986) -> ECOTGG1 M54893 Actinomycetologica 5, 14-17 (1991) -> STMARGG D00799 Adv. Biophys. 21, 115-133 (1986) -> R10REP M26840 Adv. Biophys. 21, 175-192 (1986) -> ECONUSAA M26839 Adv. Enzyme Regul. 21, 225-237 (1983) -> ECOPURFA M26893 Adv. Exp. Med. Biol. 195, 239-246 (1986) -> ECOAPT M14040 Agric. Biol. Chem. 50, 2155-2158 (1986) -> ECONANA M20207 Agric. Biol. Chem. 50, 2771-2778 (1986) -> BRLAM330 D00038 Agric. Biol. Chem. 51, 2019-2022 (1987) -> BACCGT D00129 Agric. Biol. Chem. 51, 2641-2648 (1987) -> STRSAGP D00219 Agric. Biol. Chem. 51, 2807-2809 (1987) -> BACPGECR M35503 Agric. Biol. Chem. 51, 3133-3135 (1987) -> BACXYLAP D00312 Agric. Biol. Chem. 51, 455-463 (1987) -> BACHDCRY D00117 Agric. Biol. Chem. 51, 953-955 (1987) -> BACXYNAA D00087 Agric. Biol. Chem. 52, 1565-1573 (1988) -> BACIP135 D00348 Agric. Biol. Chem. 52, 1785-1789 (1988) -> BACTMR D00343 Agric. Biol. Chem. 52, 2243-2246 (1988) -> PSEGI D00342 Agric. Biol. Chem. 52, 399-406 (1988) -> BACAMYEB M35517 Agric. Biol. Chem. 52, 479-487 (1988) -> ECAPALI D00217 ------------------------------------------------------------------------------ Table 7. Part of the contents in the file 'ddbjbct.key'. For the locus and accession number respectively given on the right to the arrow, the corresponding key words are listed on the left. ------------------------------------------------------------------------------ A.aceti acetic acid resistance protein (aarA) gene, complete cds. -> ABCAARAA M34830 acetic acid resistance protein. -> ABCAARAA M34830 Cloning of genes responsible for acetic acid resistance in acetobacter aceti -> ABCAARAA M34830 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. -> ABCADHCC D00635 alcohol dehydrogenase; cytochrome c. -> ABCADHCC D00635 Cloning and sequencing of the gene cluster encoding two subunits of membrane- bound alcohol dehydrogenase from Acetobacter polyoxogenes -> ABCADHCC D00635 These data kindly submitted in computer readable form by: Toshimi Tamaki Nakano Central Biochemical Institute 2-6 Nakamura-cho Handa-shi, Aichi-ken 475 Japan Phone: 0569-21-3331 Fax: 0569-23-8486 -> ABCADHCC D00635 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. -> ABCALDH D00521 aldehyde dehydrogenase gene; ethanol oxidation; membrane-bound enzyme. -> ABCALDH D00521 Nucleotide sequence of the membrane-bound aldehyde dehydrogenase gene from Acetobacter polyoxogenes -> ABCALDH D00521 ------------------------------------------------------------------------------ Table 8. Part of the contents in the file 'ddbjbct.org'. For the locus and accession number respectively given on the right to the arrow, the corresponding taxonomic names are listed on the left. They are arranged in the alphabetical order of the species names. ------------------------------------------------------------------------------ A. nidulans 6301 DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRUBPS X00019 A. nidulans DNA, clone pAN4. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGGX X00343 A. nidulans DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGG X00512 A. polyoxogenes genomic DNA. Acetobacter polyoxogenes Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. - > ABCADHCC D00635 A. quadruplicatum (strain PR-6) DNA, clone pAQPR1. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUPCAB K02660 A. quadruplicatum (strain PR6) DNA. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUCPCAB K02659 A. vinelandii DNA. Azotobacter vinelandii Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> AVINIFUSV M17349 A.aceti (strain 10-8) DNA, clone pAR1611. Acetobacter aceti Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> ABCAARAA M34830 A.actinomycetemcomitans (strain JP2) DNA, clone lambda-OP8. Actinobacillus actinomycetemcomitans Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Pasteurellaceae. -> ACNLKTXN M27399 A.anitratum DNA, clone pLJD1. Acinetobacter anitratum Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Neisseriaceae. -> ACCCITSYN M33037 ------------------------------------------------------------------------------ Table 9. Part of the short directory file in DDBJ style in the file 'ddbjbct.sdr'. The short directory file contains brief descriptions of all of the sequence entries contained in the DDBJ style. ------------------------------------------------------------------------------ ABCAARAA A.aceti acetic acid resistance protein (aarA) gene, complete 1624bp ABCADHCC A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and 4230bp ABCALDH A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, 2683bp ABCBCSABCD A.xylinum bcs A, B, C and D genes, complete cds's. 9540bp ABCCELA Acetobacter xylinum UDP pyrophosphorylase (celA) gene, 1165bp ABCCELSYN A. xylinum gene for cellulose biosynthesis 5363bp ABCIS1380 A.pasteurianus insertion sequence IS1380. 1665bp ACAADH1 Acetobacter aceti(K6033) alcohol dehydrogenase subunit 2467bp ACCAAC2 Acinetobacter baumannii aminoglycoside acetyltransferase 1123bp ACCACEAA A.baumannii chloramphenicol acetyltransferase (cat) gene, 1874bp ACCAPHA6 Acinetobacter baumannii aphA-6 gene. 1170bp ACCBENABCA A.calcoaceticus BenA, BenB, BenC, BenD, and BenE proteins 15922bp ACCCAT Acinetobacter calcoaceticus cat operon. 15922bp ACCCATAM A.calcoaceticus catA and catM genes, encoding catechol 1, 5537bp ACCCHMO Acinetobacter sp. cyclohexanone monooxygenase gene, complete 2128bp ACCCITSYN A.anitratum citrate synthase gene, complete cds. 1895bp ------------------------------------------------------------------------------ In addition to the 9 tables the four following index files are included in this release. These files were prepared irrespective of the 10 categories of taxonomic divisions. Accession number index file Keyword phrase index file Journal citation index file Gene name index file A brief description is given for each file in the following. Table 10. Part of the accession number index file in the 'ddbjacc.idx'. The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00100 PSEASPAA BCT D00100 D00101 RABNP450R MAM D00101 D00102 HUMLTX HUM D00102 D00103 AFARRN5SA BCT D00103 AFRRN5SA BCT X05517 D00104 AFARRN5SB BCT D00104 AFRRN5SB BCT X05518 D00105 AFARRN5S BCT D00105 ASRRN5S BCT X05524 D00106 ACH5SRR BCT D00106 AXRRN5S BCT X05522 AXRRN5SA BCT X05523 D00107 ACH5SRRX BCT D00107 ACRRN5S BCT X05521 ------------------------------------------------------------------------------ Table 11. Part of the keyword phrase index file in the 'ddbjkey.idx'. Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ A CHANNEL DROCHA INV M17155 A COMPONENT SQLCVEA VRL M38183 A LOCUS GORGOGOA3 PRI X54375 GORGOGOA4 PRI X54376 A LOCUS ALLELE GORA0101 PRI X60258 GORA0201 PRI X60259 GORA0401 PRI X60257 GORA0501 PRI X60256 A MULTI-GENE FAMILY RICGLUTE PLN D00584 A PROTEIN MS2AAR PHG M25187 ST1APCS PHG M25396 A SEQUENCE HS5TOA30 VRL D00148 HS5TOA31 VRL D00147 ------------------------------------------------------------------------------ Table 12. Part of the journal citation index file in 'ddbjjou.idx'. The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ ACTA BIOCHIM. BIOPHYS. SIN. 23, 246-253 (1992) HUMPLASINS HUM M98056 ACTA BIOCHIM. BIOPHYS. SIN. 28, 233-239(1996) TKTII PLN X82230 ACTA BIOCHIM. POL. 24, 301-318 (1977) LUPTRFJ PLN K00345 LUPTRFN PLN K00346 ACTA BIOCHIM. POL. 26, 369-381(1979) HVTRNPHE PLN X02683 ACTA BIOCHIM. POL. 29, 143-149 (1982) EMEMTA PLN M32572 EMEMTB PLN M32573 EMEMTC PLN M32574 EMEMTD PLN M32575 EMEMTE PLN M32576 ACTA BIOCHIM. POL. 34, 21-27 (1987) LUPNOSP PLN M32571 ------------------------------------------------------------------------------ Table 13. Part of the gene name index file in 'ddbjgen.idx'. This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ AACC8 STMAACC8 BCT M55426 AACC9 MPUAACC9 BCT M55427 AACT HUMA1ACM PRI K01500 HUMA1ACMA PRI X00947 HUMA1ACMB PRI M18035 HUMAACT1 PRI M18906 HUMAACT2 PRI M22533 HUMAACTA PRI J05176 AAD INTINTORF BCT L06418 LMOMO229D BCT X17478 AAD A1 ENTAAC3VI BCT M88012 AAD9 ENEAAD9A BCT M69221 AADA LMOMO229A BCT X17479 S52249 BCT S52249 SYNAADA SYN M60473 TRNTAAB BCT M55547 TRNTN21CAS BCT M86913 ------------------------------------------------------------------------------ The files in this release are arranged in the following order with non-labeled format. Category number of number of file name file size entries bases Release note ddbjrel.txt 59069 bacteria1 21665 124146229 ddbjbct1.seq 299020207 bacteria2 41754 118078502 ddbjbct2.seq 299009705 bacteria3 49011 112263422 ddbjbct3.seq 299159025 bacteria4 37706 125958099 ddbjbct4.seq 299034190 bacteria5 14601 32153837 ddbjbct5.seq 81786008 CON 10229 0 ddbjcon.seq 15005546 EST1 92524 34472071 ddbjest1.seq 299001062 EST2 95791 38929903 ddbjest2.seq 299002240 EST3 97003 37637071 ddbjest3.seq 299002734 EST4 90418 27911108 ddbjest4.seq 299002260 EST5 96363 37729916 ddbjest5.seq 299002889 EST6 100463 39928303 ddbjest6.seq 299001415 EST7 99844 38587021 ddbjest7.seq 299000708 EST8 98638 38083271 ddbjest8.seq 299000373 EST9 100192 39657893 ddbjest9.seq 299002192 EST10 101391 39680901 ddbjest10.seq 299000158 EST11 98487 40786763 ddbjest11.seq 299001006 EST12 99308 43050277 ddbjest12.seq 299001577 EST13 108126 43886592 ddbjest13.seq 299001897 EST14 103273 40834377 ddbjest14.seq 299000054 EST15 97601 40921319 ddbjest15.seq 299002349 EST16 95957 43431739 ddbjest16.seq 299000372 EST17 99489 40940946 ddbjest17.seq 299002390 EST18 99260 43057159 ddbjest18.seq 299000525 EST19 96457 40616105 ddbjest19.seq 299000824 EST20 96144 40527516 ddbjest20.seq 299001324 EST21 125736 59372398 ddbjest21.seq 299000159 EST22 94440 60435758 ddbjest22.seq 299000257 EST23 112208 72017295 ddbjest23.seq 299001583 EST24 126687 65441341 ddbjest24.seq 299000949 EST25 129315 61920937 ddbjest25.seq 299001453 EST26 117026 60188299 ddbjest26.seq 299002011 EST27 105530 39857828 ddbjest27.seq 299001011 EST28 89766 24073456 ddbjest28.seq 299002505 EST29 91425 26523663 ddbjest29.seq 299001594 EST30 58778 16227046 ddbjest30.seq 299002783 EST31 58932 16148085 ddbjest31.seq 299000112 EST32 73719 26719797 ddbjest32.seq 299001671 EST33 120969 53398009 ddbjest33.seq 299001202 EST34 106287 54374613 ddbjest34.seq 299001416 EST35 93422 43693172 ddbjest35.seq 299001911 EST36 127326 66505761 ddbjest36.seq 299000402 EST37 106118 48922352 ddbjest37.seq 299004096 EST38 89954 38830799 ddbjest38.seq 299001685 EST39 94533 41427919 ddbjest39.seq 299002063 EST40 97839 40717754 ddbjest40.seq 299001478 EST41 101122 39708971 ddbjest41.seq 299001429 EST42 87282 37360227 ddbjest42.seq 299003635 EST43 91567 40983429 ddbjest43.seq 299002254 EST44 103479 46500654 ddbjest44.seq 299002380 EST45 95984 37184308 ddbjest45.seq 299001755 EST46 108188 44707633 ddbjest46.seq 299002062 EST47 73832 26747727 ddbjest47.seq 299001895 EST48 58661 16685286 ddbjest48.seq 299000168 EST49 58513 18049516 ddbjest49.seq 299003700 EST50 58875 18057344 ddbjest50.seq 299001738 EST51 58762 18565615 ddbjest51.seq 299004119 EST52 58495 17751088 ddbjest52.seq 299004446 EST53 58835 18121390 ddbjest53.seq 299003639 EST54 60263 17585408 ddbjest54.seq 299004175 EST55 59777 18851715 ddbjest55.seq 299000737 EST56 60229 18739929 ddbjest56.seq 299002374 EST57 58617 24854090 ddbjest57.seq 299002529 EST58 54808 30090658 ddbjest58.seq 299001454 EST59 53364 21921478 ddbjest59.seq 299002870 EST60 52826 24198092 ddbjest60.seq 299003819 EST61 53470 21962583 ddbjest61.seq 299004749 EST62 78792 35914947 ddbjest62.seq 299000753 EST63 96342 36618526 ddbjest63.seq 299002883 EST64 96472 42357439 ddbjest64.seq 299000044 EST65 101746 57183175 ddbjest65.seq 299000105 EST66 99523 55119337 ddbjest66.seq 299002769 EST67 100733 51476741 ddbjest67.seq 299003115 EST68 92467 49411902 ddbjest68.seq 299001550 EST69 97926 49435691 ddbjest69.seq 299001591 EST70 94670 46196146 ddbjest70.seq 299000024 EST71 97369 57935656 ddbjest71.seq 299000107 EST72 89423 50695459 ddbjest72.seq 299000998 EST73 95195 51244433 ddbjest73.seq 299000802 EST74 96064 56759227 ddbjest74.seq 299002930 EST75 91857 57984900 ddbjest75.seq 299000239 EST76 92728 41819369 ddbjest76.seq 299001273 EST77 89213 41428066 ddbjest77.seq 299003828 EST78 89563 50658487 ddbjest78.seq 299002101 EST79 89406 58330072 ddbjest79.seq 299000972 EST80 98387 45918589 ddbjest80.seq 299001064 EST81 97945 35373319 ddbjest81.seq 299000624 EST82 97316 43264513 ddbjest82.seq 299002643 EST83 88841 45820029 ddbjest83.seq 299003752 EST84 102928 60820895 ddbjest84.seq 299001698 EST85 102712 59690337 ddbjest85.seq 299002617 EST86 87918 53058181 ddbjest86.seq 299002165 EST87 95699 63966934 ddbjest87.seq 299000926 EST88 91053 57391198 ddbjest88.seq 299002657 EST89 96653 55465078 ddbjest89.seq 299001612 EST90 95955 63939342 ddbjest90.seq 299002980 EST91 95472 64146438 ddbjest91.seq 299002516 EST92 101908 54702632 ddbjest92.seq 299000547 EST93 99414 37224205 ddbjest93.seq 299001825 EST94 105643 62573198 ddbjest94.seq 299002368 EST95 98689 58624129 ddbjest95.seq 299002607 EST96 85057 41418999 ddbjest96.seq 299002495 EST97 92090 51548388 ddbjest97.seq 299000633 EST98 88226 48864825 ddbjest98.seq 299000830 EST99 93782 56229533 ddbjest99.seq 299001488 EST100 90368 55769223 ddbjest100.seq 299000670 EST101 93984 53744882 ddbjest101.seq 299000733 EST102 90195 55846464 ddbjest102.seq 299001116 EST103 82447 46836682 ddbjest103.seq 299002107 EST104 118410 64602955 ddbjest104.seq 299001711 EST105 96153 53328561 ddbjest105.seq 299001471 EST106 119435 63025998 ddbjest106.seq 299000934 EST107 122122 66531352 ddbjest107.seq 299001141 EST108 107897 60808151 ddbjest108.seq 299001165 EST109 89790 49294277 ddbjest109.seq 299000501 EST110 85151 40098246 ddbjest110.seq 299000688 EST111 75352 38558762 ddbjest111.seq 299001636 EST112 79057 39651477 ddbjest112.seq 299003510 EST113 88081 46494621 ddbjest113.seq 299000554 EST114 91273 60030637 ddbjest114.seq 299000758 EST115 96523 66002824 ddbjest115.seq 299001082 EST116 86133 46011960 ddbjest116.seq 299000952 EST117 82404 42401786 ddbjest117.seq 299000888 EST118 88392 48026400 ddbjest118.seq 299001346 EST119 84238 58388154 ddbjest119.seq 299002605 EST120 90577 50418253 ddbjest120.seq 299002565 EST121 89343 56695238 ddbjest121.seq 299003028 EST122 78121 45070403 ddbjest122.seq 299003058 EST123 91294 54645642 ddbjest123.seq 299003582 EST124 97292 37258573 ddbjest124.seq 299000722 EST125 93705 56540442 ddbjest125.seq 299001534 EST126 92446 47781572 ddbjest126.seq 299000738 EST127 90666 59981611 ddbjest127.seq 299001174 EST128 89961 58280061 ddbjest128.seq 299002251 EST129 87792 49516699 ddbjest129.seq 299002412 EST130 91592 70212170 ddbjest130.seq 299002572 EST131 93296 48080431 ddbjest131.seq 299000391 EST132 91801 65728352 ddbjest132.seq 299000875 EST133 84139 62051685 ddbjest133.seq 299000385 EST134 84490 49924469 ddbjest134.seq 299000594 EST135 77584 43684414 ddbjest135.seq 299002204 EST136 113019 65952238 ddbjest136.seq 299003219 EST137 93436 58278083 ddbjest137.seq 299000544 EST138 125647 78934763 ddbjest138.seq 299000829 EST139 129249 77473910 ddbjest139.seq 299000044 EST140 134772 60050543 ddbjest140.seq 299000868 EST141 103766 55238042 ddbjest141.seq 299001358 EST142 100138 57678374 ddbjest142.seq 299003062 EST143 83274 60265215 ddbjest143.seq 299003824 EST144 119811 42965856 ddbjest144.seq 299001101 EST145 91399 33256603 ddbjest145.seq 299000985 EST146 97326 35724216 ddbjest146.seq 299000687 EST147 94423 34321950 ddbjest147.seq 299000375 EST148 103664 35668903 ddbjest148.seq 299002317 EST149 89612 37696412 ddbjest149.seq 299001421 EST150 21762 6542235 ddbjest150.seq 53904807 GSS1 102947 76148400 ddbjgss1.seq 299000308 GSS2 100337 71512637 ddbjgss2.seq 299000045 GSS3 108879 78300840 ddbjgss3.seq 299002622 GSS4 84773 70889516 ddbjgss4.seq 299003011 GSS5 83103 74191858 ddbjgss5.seq 299002264 GSS6 77321 66762204 ddbjgss6.seq 299001560 GSS7 111899 46027500 ddbjgss7.seq 299001813 GSS8 118930 47534019 ddbjgss8.seq 299000688 GSS9 116881 54697663 ddbjgss9.seq 299002109 GSS10 105108 54700363 ddbjgss10.seq 299000315 GSS11 104615 53207756 ddbjgss11.seq 299000782 GSS12 101452 51071475 ddbjgss12.seq 299000360 GSS13 101901 51169442 ddbjgss13.seq 299002859 GSS14 95377 49193593 ddbjgss14.seq 299000488 GSS15 99745 55302724 ddbjgss15.seq 299001966 GSS16 89265 47332029 ddbjgss16.seq 299000637 GSS17 97467 49341767 ddbjgss17.seq 299003146 GSS18 94383 42186237 ddbjgss18.seq 299000489 GSS19 98733 58409658 ddbjgss19.seq 299001321 GSS20 92738 42794458 ddbjgss20.seq 299000228 GSS21 74924 38042093 ddbjgss21.seq 299000245 GSS22 75633 36152067 ddbjgss22.seq 299000265 GSS23 81024 41330105 ddbjgss23.seq 299003440 GSS24 81979 42317852 ddbjgss24.seq 299001631 GSS25 80285 48999036 ddbjgss25.seq 299001912 GSS26 90604 38752613 ddbjgss26.seq 299003725 GSS27 76086 34969906 ddbjgss27.seq 299003690 GSS28 92303 44248313 ddbjgss28.seq 299000178 GSS29 86635 46930373 ddbjgss29.seq 299002175 GSS30 97154 56013823 ddbjgss30.seq 299002391 GSS31 98081 54369445 ddbjgss31.seq 299002154 GSS32 101486 54227893 ddbjgss32.seq 299000662 GSS33 109226 62554441 ddbjgss33.seq 299001916 GSS34 123662 82158488 ddbjgss34.seq 299000794 GSS35 118582 66616835 ddbjgss35.seq 299000396 GSS36 113218 57198318 ddbjgss36.seq 299000990 GSS37 112714 45644623 ddbjgss37.seq 299001724 GSS38 106475 74613312 ddbjgss38.seq 299000489 GSS39 100453 70384573 ddbjgss39.seq 299000122 GSS40 94836 62848404 ddbjgss40.seq 299002868 GSS41 101128 59471462 ddbjgss41.seq 299000138 GSS42 114726 53822313 ddbjgss42.seq 299002471 GSS43 23455 10487975 ddbjgss43.seq 56246895 HTC 41320 52468049 ddbjhtc.seq 231135125 HTG1 1573 227883588 ddbjhtg1.seq 299129735 HTG2 3394 224783323 ddbjhtg2.seq 299025789 HTG3 2473 225965834 ddbjhtg3.seq 299154689 HTG4 2477 226502612 ddbjhtg4.seq 299157768 HTG5 1550 224560598 ddbjhtg5.seq 299122010 HTG6 1496 225178060 ddbjhtg6.seq 299139857 HTG7 1539 224818144 ddbjhtg7.seq 299118069 HTG8 1403 226962271 ddbjhtg8.seq 299012289 HTG9 1618 225404702 ddbjhtg9.seq 299238199 HTG10 1509 226984290 ddbjhtg10.seq 299162535 HTG11 893 230332568 ddbjhtg11.seq 299221012 HTG12 864 230393311 ddbjhtg12.seq 299023202 HTG13 859 230492565 ddbjhtg13.seq 299359213 HTG14 950 230251340 ddbjhtg14.seq 299172138 HTG15 882 230539806 ddbjhtg15.seq 299203206 HTG16 1907 220148537 ddbjhtg16.seq 299001358 HTG17 1695 221202866 ddbjhtg17.seq 299211336 HTG18 1289 226765505 ddbjhtg18.seq 299011933 HTG19 1135 228254585 ddbjhtg19.seq 299276327 HTG20 921 230056501 ddbjhtg20.seq 299247825 HTG21 1201 227743139 ddbjhtg21.seq 299286676 HTG22 1142 228228652 ddbjhtg22.seq 299221859 HTG23 1043 228705355 ddbjhtg23.seq 299079331 HTG24 931 230124418 ddbjhtg24.seq 299239197 HTG25 1139 228218081 ddbjhtg25.seq 299194119 HTG26 1087 228797554 ddbjhtg26.seq 299043808 HTG27 1373 225839414 ddbjhtg27.seq 299178103 HTG28 1217 227267296 ddbjhtg28.seq 299296728 HTG29 1243 227408430 ddbjhtg29.seq 299250806 HTG30 1353 225863753 ddbjhtg30.seq 299236215 HTG31 1239 228790684 ddbjhtg31.seq 299252739 HTG32 1269 227423624 ddbjhtg32.seq 299034613 HTG33 1243 229091375 ddbjhtg33.seq 299231253 HTG34 1074 229540896 ddbjhtg34.seq 299098159 HTG35 1037 230139190 ddbjhtg35.seq 299154269 HTG36 1001 229721784 ddbjhtg36.seq 299075401 HTG37 1114 228826740 ddbjhtg37.seq 299014324 HTG38 1287 227649480 ddbjhtg38.seq 299085637 HTG39 1100 229927772 ddbjhtg39.seq 299115506 HTG40 1473 225949662 ddbjhtg40.seq 299151796 HTG41 1800 223915746 ddbjhtg41.seq 299048789 HTG42 1739 225052521 ddbjhtg42.seq 299184733 HTG43 1318 230292912 ddbjhtg43.seq 299016177 HTG44 1184 230637831 ddbjhtg44.seq 299216048 HTG45 1335 230315310 ddbjhtg45.seq 299142416 HTG46 1560 231659571 ddbjhtg46.seq 299127516 HTG47 506 65893614 ddbjhtg47.seq 84653732 human1 10840 195730545 ddbjhum1.seq 299189098 human2 1571 213025468 ddbjhum2.seq 299223223 human3 1560 215974320 ddbjhum3.seq 299061613 human4 1360 207319484 ddbjhum4.seq 299097495 human5 1453 215196380 ddbjhum5.seq 299122770 human6 1466 206250028 ddbjhum6.seq 299190279 human7 1466 205620024 ddbjhum7.seq 299018669 human8 1677 210453340 ddbjhum8.seq 299272968 human9 1564 209590096 ddbjhum9.seq 299113834 human10 1929 211352466 ddbjhum10.seq 299011092 human11 35030 166882489 ddbjhum11.seq 299003931 human12 68196 118540471 ddbjhum12.seq 299045677 human13 3415 201649578 ddbjhum13.seq 299053887 human14 3077 212016242 ddbjhum14.seq 299034224 human15 2239 217631797 ddbjhum15.seq 299136542 human16 2531 217882044 ddbjhum16.seq 299038312 human17 4812 218893298 ddbjhum17.seq 299351001 human18 36421 156570860 ddbjhum18.seq 299002241 human19 63109 103005664 ddbjhum19.seq 259856994 invertebrates1 8812 213665477 ddbjinv1.seq 299115366 invertebrates2 13927 174704952 ddbjinv2.seq 299001884 invertebrates3 79059 105980189 ddbjinv3.seq 299000449 invertebrates4 45532 123155545 ddbjinv4.seq 292995426 mammals 43240 49494934 ddbjmam.seq 144186511 patens1 248113 97244871 ddbjpat1.seq 299000111 patens2 177681 100519186 ddbjpat2.seq 299002205 patens3 135430 135738310 ddbjpat3.seq 299000082 patens4 174136 64013633 ddbjpat4.seq 299000449 patens5 137961 52486749 ddbjpat5.seq 214891043 phages 2219 7285060 ddbjphg.seq 18820299 plants1 23681 168588260 ddbjpln1.seq 299001937 plants2 90582 97077388 ddbjpln2.seq 299000029 plants3 46408 140319188 ddbjpln3.seq 299064846 plants4 39424 137282326 ddbjpln4.seq 299003047 plants5 54116 92723425 ddbjpln5.seq 245562658 primates 16576 31926971 ddbjpri.seq 74662095 rodents1 6517 219269715 ddbjrod1.seq 299033701 rodents2 30088 183679126 ddbjrod2.seq 299164923 rodents3 1465 233017851 ddbjrod3.seq 299246906 rodents4 48549 146402365 ddbjrod4.seq 299005747 rodents5 5473 6316487 ddbjrod5.seq 19502051 STS 155176 65830126 ddbjsts.seq 418218594 synthetic DNAs 7269 13573611 ddbjsyn.seq 33052351 TPA 114 2783051 ddbjtpa.seq 4043373 unannotated sequences 613 325550 ddbjuna.seq 1394328 viruses1 89666 75992516 ddbjvrl1.seq 299002348 viruses2 79454 74516367 ddbjvrl2.seq 269776859 vertebrates 88247 120164415 ddbjvrt.seq 329359206 Accession number index file 0 0 ddbjacc.idx 793152874 Gene name index file 0 0 ddbjgen.idx 44223628 Journal citation index file 0 0 ddbjjou.idx 853222787 Keyword phrase index file 0 0 ddbjkey.idx 748857497 ------------------------------------------------------- EST: expressed sequence tag CON: Contig sequences GSS: genome survey sequence HTC: high throughput cDNA HTG: high throughput genome sequence STS: sequence tagged site TPA: third party annotation