DNA Data Bank of Japan DNA Database Release 53, Mar. 2003, including 23,250,813 entries, 29,711,299,332 bases This database may be copied and redistributed without permission on the condition that all the statements in this release note are reproduced in each copy. The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank, and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of Feb. 26, 2003. This unified database was made possible thanks to the international collaboration among the three data banks. All the entries have accordingly been annotated using the feature keys common to them. All the entries designated by the accession numbers with the prefixes "C", "D", "E", "AB", "AG", "AK", "AP", "AT", "AU", "AV", "BA", "BB", "BD", "BJ", "BP" and "BW" have been collected and processed by DDBJ, and the rest have been prepared by GenBank and EMBL/EBI. There have been a number of genome projects going on worldwide. Among them human genome projects have probably been most productive and yielded a large number of ordinary sequences, huge amounts of ESTs and quantities of genome sequences. Thus, we have the human(HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. The HUM division in this release was recorded in 20 files each of which had 300 MB storage capacity. Incidentally, the BCT, INV, PLN, PAT, VRL and ROD divisions were recorded in 5, 5, 6, 6, 2, 6 files, respectively. Note that the EST division also contains human sequences. The present release does not have the ORG division. Thus, if you are interested in human mitochondrial sequences, for example, you are now advised to refer to the HUM division. This release also includes a division (PAT) for patent data. The patent data are those which the Japanese Patent Office (JPO), United States Patent and Trademark Office (USPTO), and the European Patent Office (EPO) collected and processed. The accession numbers of the patent data collected by the Japanese Patent Office start with the prefix "E" and "BD", those collected and supplied by USPTO and GenBank respectively start with "I" and "AR", and those collected and supplied by EPO and EMBL/EBI respectively start with "A" and "AX". The entries with the prefixes "I", "AR", "A", "AX", "E" and "BD" were allocated to six files (ddbjpat1.seq ŽÐ ddbjpat6.seq) in the DDBJ format. Note also that unauthorized use of the patent data may cause legal issues for which we take no responsibility. In the present release, the SOURCE in the flat file was revisited and revised if necessary in accordance with the unified taxonomy database common to the three data banks. The number of ESTs has been increasing at an enormous rate and is expected to be growing even more rapidly in the future. Therefore, EST data were stored in 177 files each of which had the same storage capacity as the file of the HUM division. The present release includes the GSS division. GSS stands for the Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. This division was recorded in 47 files similarly to the HUM division. This release also includes the High Throughput Genomic Sequence (HTGS), which comes mainly from genome project teams which deal with a clone as a sequencing unit. HTGS in this release were recorded in 49 files similarly to the HUM division. The index files are not presented in this release except for ddbjacc.idx, ddbjgen.idx, ddbjjou.idx, and ddbjkey.idx. Instead, we have included a program by which to make the index files not presented in this release. For the use of the program, see the files, seq2indexes.doc, seq2indexes.c, and seq2indexes.h in this release. The present release contains amino acid sequences that were translated from the corresponding nucleotide sequences in our database. In the translation we paid much attention to the fact that some species or organella have a codon different from the universal one, and used the proper codon table. If you find an incorrect codon in a translated sequence, please let us know. The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence (see Table 1). It is expressed like AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. We terminated the RNA division. The RNA data were redistributed according to the category of the organism. Therefore, you will find a human RNA sequence, for example, in the HUM division. The present release includes a division, CON. The CON division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. The current number of the entries of this division is 10,833. The present release also includes, HTC (High Throughput cDNA). The definition of the HTC division is as follows. This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. From release 51, TPA (Third Party Annotation) data were available. According to the international collaborative meeting of the three data banks held in 2002, '/sequenced_mol' qualifier will be changed to '/mol_type' one that is required for all entries. We are now retrofitting it to all entries, and it will be completed by May 2003. This release is published by the following DDBJ staff. T. Gojobori, Y. Tateno, K. Nishikawa, H. Sugawara, N. Saitou, S. Miyazaki, K. Ikeo, K. Fukami-Kobayashi, Y. Suzuki, S. Fukuchi, H. Aono, M. Ejima, N. Endo, Y. Fujisawa, M. Gojobori, H. Hashimoto, A. Hashizume, T. Hirai, N. Hoshi, H. Ichikawa, K. Ichikawa, T. Iizuka, N. Ishizaka, T. Kato, T. Kawamoto, J. Kohira, Ta. Koike, To. Koike, T. Kosuge, A. Kusakabe, K. Mamiya, J. Mashima, M. Matsuo, K. Mimura, S. Misu, N. Murakata, S. Nagira, M. Nagura, N. Nishinomiya, T. Okido, K. Sakai, Y. Shigemoto, Y. Sugisaki, F. Sugiyama, Y. Sugiyama, M. Suzuki, T. Takaki, H. Tsutsui, M.Tuboi, K. Watanabe, M. Yamaguchi, Y. Yamamoto, T. Yazaki, K. Yoshioka Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Mishima 411-8540, Japan Phone: +81 55 981 6853 FAX: +81 55 981 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp/ (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp/ (for DDBJ sequence data submission system) Acknowledgement: We are grateful to NCBI and EMBL/EBI for a firm friendship and an excellent collaboration with us. We also thank the Japanese Patent Office for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ Database Release History Release Date Entries Bases Comments 53 02/03 23,250,813 29,711,299,332 52 12/02 20,354,812 26,931,456,316 51 09/02 18,401,358 22,782,404,136 TPA started 50 06/02 17,260,693 20,158,357,982 49 04/02 16,503,157 18,579,627,226 48 01/02 15,016,100 16,197,713,855 47 10/01 13,266,610 14,145,671,645 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------------------------------------------------------------ This release covers 20 categories of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct.*** Category for bacteria ddbjest.*** Category for EST (expressed sequence tag) ddbjcon.*** Category for CON (Contig sequences) ddbjhtc.*** Category for HTC (high throughput cDNA) ddbjhtg.*** Category for HTG (high throughput genomic sequence) ddbjhum.*** Category for human ddbjgss.*** Category for GSS (Genome Survey Sequence) ddbjinv.*** Category for invertebrates ddbjmam.*** Category for mammals other than primates and rodents ddbjpat.*** Category for patents ddbjphg.*** Category for phages ddbjpln.*** Category for plants ddbjpri.*** Category for primates other than human ddbjrod.*** Category for rodents ddbjsts.*** Category for STS (sequence tagged site) ddbjsyn.*** Category for synthetic DNAs ddbjtpa.*** Category for TPA (Third Party Annotation) ddbjuna.*** Category for unannotated sequences ddbjvrl.*** Category for viruses ddbjvrt.*** Category for vertebrates other than mammals ------------------------------------------------------------------------------ Each category then has the following nine files. Note that all the files except for ddbj***.seq are created by the user by use of seq2indexes as mentioned in the release note. ------------------------------------------------------------------------------ ddbj***.seq List of an entry in DDBJ format, see Table 1. ddbj***.acc List of the accession numbers, see Table 2 . ddbj***.aut List of the authors, see Table 3. ddbj***.dir List of the short directory in DDBJ style, see Table 4. ddbj***.idx List of indices, see Table 5. ddbj***.jou List of the journals, see Table 6. ddbj***.key List of the key words, see Table 7. ddbj***.org List of the species names, see Table 8. ddbj***.sdr List of the short directory in DDBJ style, see Table 9. ------------------------------------------------------------------------------ The format of LOCUS line in the flat file was changed as shown below to adjust to the GenBank format from release 51. ------------------------------------------------------------------------------ Old (-rel. 50): LOCUS AB000001 660 bp DNA PLN 01-FEB-2001 Present (rel. 51-): LOCUS AB000001 660 bp DNA linear PLN 01-FEB-2001 New format specification: --------- -------- Positions Contents --------- -------- 01-05 'LOCUS' 06-12 spaces 13-28 Locus name 29-29 space 30-40 Length of sequence, right-justified 41-41 space 42-43 bp 44-44 space 45-47 spaces, ss- (single-stranded), ds- (double-stranded), or ms- (mixed-stranded) 48-53 DNA, RNA, tRNA (transfer RNA), rRNA (ribosomal RNA), mRNA (messenger RNA), uRNA (small nuclear RNA), scRNA, snRNA, snoRNA. Left justified. 54-55 space 56-63 'linear' followed by two spaces, or 'circular' 64-64 space 65-67 The division code 68-68 space 69-79 Date, in the form dd-MMM-yyyy (e.g., 15-MAR-1991) ------------------------------------------------------------------------------ Table 1. Part of the contents in the file 'ddbjbct.seq'. This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA linear BCT 14-APR-2000 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, Truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli (strain:W3110) cDNA to mRNA. ORGANISM Escherichia coli Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Miki Jishage, National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail:mjishage@lab.nig.ac.jp, Tel:0559-81-6742, Fax:0559-81-6746) REFERENCE 2 (bases 1 to 993) AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol. Gen. Genet. 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /organism="Escherichia coli" /sequenced_mol="cDNA to mRNA" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /transl_table=11 /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK" variation 75 /citation=[3] /replace="t" variation 97 /citation=[3] /replace="t" variation 99 /citation=[3] /replace="t" variation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t 0 others ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ Table 2. Part of the contents in the file 'ddbjbct.acc'. The first column refers to the secondary accession number, second column to the locus name, and third to the primary accession number. The primary number may be the same as the secondary number. They are arranged in the ascending order of the secondary accession numbers. ------------------------------------------------------------------------------ D00001 -> ECOPBPAA X04516 D00002 -> ECOPYRH X04469 D00006 -> PNS981TET D00006 D00020 -> COLE2LYS D00020 D00021 -> COLE31YS D00021 D00038 -> BRLAM330 D00038 D00066 -> BAC139AC D00066 D00067 -> ECONANA M20207 D00069 -> ECOUVRD2 D00069 D00087 -> BACXYNAA D00087 ------------------------------------------------------------------------------ Table 3. Part of the contents in the file 'ddbjbct.aut'. For each author name given on the left to the arrow, the corresponding locus name and primary accession number are respectively listed on the right. They are arranged in the alphabetical order of the author names. ------------------------------------------------------------------------------ Aan,F. -> STYCRR X05210 Aan,F. -> STYENZI M76176 Aaronson,W. -> ECOKPSD M64977 Aaronson,W. -> ECONEUA J05023 Abad-Lapuebla,M.A. -> VIBTDHI D90238 Abdel-Mawgood,A.L. -> CYAPSBHA X16394 Abdel-Meguid,S.S. -> TRNGDRECM J01843 Abdelal,A. -> STYCARA M36540 Abdelal,A. -> STYCARAB X13200 Abdelal,A.H. -> PSENOSA M60717 ------------------------------------------------------------------------------ Table 4. Part of the short directory in DDBJ style in the file 'ddbjbct.dir'. For each locus name given in the first column, the corresponding primary accession number, molecular type, number of nucleotide pairs, and description for the locus are respectively listed. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ ABCAARAA M34830 ds-DNA 1624 A.aceti acetic acid resistance protein (aarA) gene, complete cds. ABCADHCC D00635 ds-DNA 4230 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. ABCALDH D00521 ds-DNA 2683 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. ABCBCSAA M37202 ds-DNA 9540 A.xylinum bcs B, bcs C and bcs D genes, complete cds and bcs A gene, partial cds. ABCCELA M76548 ds-DNA 1165 Acetobacter xylinum UDP pyrophosphorylase (celA) gene, complete cds. ABCCELSYN X54676 ds-DNA 5363 A. xylinum gene for cellulose biosynthesis ABCIS1380 D10043 ds-DNA 1665 A.pasteurianus insertion sequence IS1380. ACAADH1 D90004 ds-DNA 2467 Acetobacter aceti(K6033) alcohol dehydrogenase subunit gene(adh1). ACCAAC2 M62833 ds-DNA 1123 Acinetobacter baumannii aminoglycoside acetyltr ansferase (aac2) gene, complete cds. ACCACEAA M62822 ds-DNA 1874 A.baumannii chloramphenicol acetyltransferase (cat) gene, complete cds. ------------------------------------------------------------------------------ Table 5. Part of the contents in the file 'ddbjbct.idx'. The first column refers to the locus name, second column to the starting site of the locus in byte, and third to its ending site in byte. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ %***************************** #ABCAARAA 0 3211 #ABCADHCC 3212 10608 #ABCALDH 10609 15864 #ABCBCSAA 15865 29583 #ABCCELA 29584 32289 #ABCCELSYN 32290 40960 #ABCIS1380 40961 44711 #ACAADH1 44712 49357 #ACCAAC2 49358 52395 ------------------------------------------------------------------------------ Table 6. Part of the contents in the file 'ddbjbct.jou'. This gives information on the journal in which sequence data were published. ------------------------------------------------------------------------------ (in) Chaloupka,J. and Krumphanzl,V. (Eds.); Extracellular Enzymes of Microorganisms: 129-137, Plenum Press, New York (1987) -> BACAMYABS M57457 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16S M55011 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SA M55006 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SB M55008 (in) Hoch,J.A. and Setlow,P. (Eds.); Molecular Biology of Microbial Differentiation: 85-94, American Society for Microbiology, Washington, DC (1985) -> BACSPOII M57606 (in) Holmgren,A. (Ed.); Thioredoxin and Glutaredoxin Systems: Structure and Function: 11-19, Unknown name, Unknown city (1986) -> ECOTRXA1 M54881 (in) Kjeldgaard,N.C. and Maaloe,O. (Eds.); Control of ribosome synthesis: 138-143, Academic Press, New York (1976) -> ECOLAC J01636 (in) Losick,R. and Chamberlin,M. (Eds.); RNA polymerase: 455-472, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1976) -> ECOTGY1 K01197 (in) Sikes,C.S. and Wheeler,A.P. (Eds.); Surface reactive peptides and polymers. Discovery and commercialization.: 186-200, American Chemical Society, Washington, D.C. (1991) -> ECOTGP J01714 (in) Sund,H. and Blauer,G. (Eds.); Protein-Ligand Interactions: 193-207, Walter de Gruyter, New York (1975) -> ECOLAC J01636 (in) Wu,R. and Grossman,L. (Eds.); Methods in Enzymology, Recombinant DNA, part E: In press, Academic Press, New York, N.Y. (1986) -> PLMCG M11320 Acta Microbiol. Pol. 35, 175-190 (1986) -> ECOTGG1 M54893 Actinomycetologica 5, 14-17 (1991) -> STMARGG D00799 Adv. Biophys. 21, 115-133 (1986) -> R10REP M26840 Adv. Biophys. 21, 175-192 (1986) -> ECONUSAA M26839 Adv. Enzyme Regul. 21, 225-237 (1983) -> ECOPURFA M26893 Adv. Exp. Med. Biol. 195, 239-246 (1986) -> ECOAPT M14040 Agric. Biol. Chem. 50, 2155-2158 (1986) -> ECONANA M20207 Agric. Biol. Chem. 50, 2771-2778 (1986) -> BRLAM330 D00038 Agric. Biol. Chem. 51, 2019-2022 (1987) -> BACCGT D00129 Agric. Biol. Chem. 51, 2641-2648 (1987) -> STRSAGP D00219 Agric. Biol. Chem. 51, 2807-2809 (1987) -> BACPGECR M35503 Agric. Biol. Chem. 51, 3133-3135 (1987) -> BACXYLAP D00312 Agric. Biol. Chem. 51, 455-463 (1987) -> BACHDCRY D00117 Agric. Biol. Chem. 51, 953-955 (1987) -> BACXYNAA D00087 Agric. Biol. Chem. 52, 1565-1573 (1988) -> BACIP135 D00348 Agric. Biol. Chem. 52, 1785-1789 (1988) -> BACTMR D00343 Agric. Biol. Chem. 52, 2243-2246 (1988) -> PSEGI D00342 Agric. Biol. Chem. 52, 399-406 (1988) -> BACAMYEB M35517 Agric. Biol. Chem. 52, 479-487 (1988) -> ECAPALI D00217 ------------------------------------------------------------------------------ Table 7. Part of the contents in the file 'ddbjbct.key'. For the locus and accession number respectively given on the right to the arrow, the corresponding key words are listed on the left. ------------------------------------------------------------------------------ A.aceti acetic acid resistance protein (aarA) gene, complete cds. -> ABCAARAA M34830 acetic acid resistance protein. -> ABCAARAA M34830 Cloning of genes responsible for acetic acid resistance in acetobacter aceti -> ABCAARAA M34830 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. -> ABCADHCC D00635 alcohol dehydrogenase; cytochrome c. -> ABCADHCC D00635 Cloning and sequencing of the gene cluster encoding two subunits of membrane- bound alcohol dehydrogenase from Acetobacter polyoxogenes -> ABCADHCC D00635 These data kindly submitted in computer readable form by: Toshimi Tamaki Nakano Central Biochemical Institute 2-6 Nakamura-cho Handa-shi, Aichi-ken 475 Japan Phone: 0569-21-3331 Fax: 0569-23-8486 -> ABCADHCC D00635 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. -> ABCALDH D00521 aldehyde dehydrogenase gene; ethanol oxidation; membrane-bound enzyme. -> ABCALDH D00521 Nucleotide sequence of the membrane-bound aldehyde dehydrogenase gene from Acetobacter polyoxogenes -> ABCALDH D00521 ------------------------------------------------------------------------------ Table 8. Part of the contents in the file 'ddbjbct.org'. For the locus and accession number respectively given on the right to the arrow, the corresponding taxonomic names are listed on the left. They are arranged in the alphabetical order of the species names. ------------------------------------------------------------------------------ A. nidulans 6301 DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRUBPS X00019 A. nidulans DNA, clone pAN4. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGGX X00343 A. nidulans DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGG X00512 A. polyoxogenes genomic DNA. Acetobacter polyoxogenes Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. - > ABCADHCC D00635 A. quadruplicatum (strain PR-6) DNA, clone pAQPR1. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUPCAB K02660 A. quadruplicatum (strain PR6) DNA. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUCPCAB K02659 A. vinelandii DNA. Azotobacter vinelandii Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> AVINIFUSV M17349 A.aceti (strain 10-8) DNA, clone pAR1611. Acetobacter aceti Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> ABCAARAA M34830 A.actinomycetemcomitans (strain JP2) DNA, clone lambda-OP8. Actinobacillus actinomycetemcomitans Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Pasteurellaceae. -> ACNLKTXN M27399 A.anitratum DNA, clone pLJD1. Acinetobacter anitratum Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Neisseriaceae. -> ACCCITSYN M33037 ------------------------------------------------------------------------------ Table 9. Part of the short directory file in DDBJ style in the file 'ddbjbct.sdr'. The short directory file contains brief descriptions of all of the sequence entries contained in the DDBJ style. ------------------------------------------------------------------------------ ABCAARAA A.aceti acetic acid resistance protein (aarA) gene, complete 1624bp ABCADHCC A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and 4230bp ABCALDH A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, 2683bp ABCBCSABCD A.xylinum bcs A, B, C and D genes, complete cds's. 9540bp ABCCELA Acetobacter xylinum UDP pyrophosphorylase (celA) gene, 1165bp ABCCELSYN A. xylinum gene for cellulose biosynthesis 5363bp ABCIS1380 A.pasteurianus insertion sequence IS1380. 1665bp ACAADH1 Acetobacter aceti(K6033) alcohol dehydrogenase subunit 2467bp ACCAAC2 Acinetobacter baumannii aminoglycoside acetyltransferase 1123bp ACCACEAA A.baumannii chloramphenicol acetyltransferase (cat) gene, 1874bp ACCAPHA6 Acinetobacter baumannii aphA-6 gene. 1170bp ACCBENABCA A.calcoaceticus BenA, BenB, BenC, BenD, and BenE proteins 15922bp ACCCAT Acinetobacter calcoaceticus cat operon. 15922bp ACCCATAM A.calcoaceticus catA and catM genes, encoding catechol 1, 5537bp ACCCHMO Acinetobacter sp. cyclohexanone monooxygenase gene, complete 2128bp ACCCITSYN A.anitratum citrate synthase gene, complete cds. 1895bp ------------------------------------------------------------------------------ In addition to the 9 tables the four following index files are included in this release. These files were prepared irrespective of the 10 categories of taxonomic divisions. Accession number index file Keyword phrase index file Journal citation index file Gene name index file A brief description is given for each file in the following. Table 10. Part of the accession number index file in the 'ddbjacc.idx'. The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00100 PSEASPAA BCT D00100 D00101 RABNP450R MAM D00101 D00102 HUMLTX HUM D00102 D00103 AFARRN5SA BCT D00103 AFRRN5SA BCT X05517 D00104 AFARRN5SB BCT D00104 AFRRN5SB BCT X05518 D00105 AFARRN5S BCT D00105 ASRRN5S BCT X05524 D00106 ACH5SRR BCT D00106 AXRRN5S BCT X05522 AXRRN5SA BCT X05523 D00107 ACH5SRRX BCT D00107 ACRRN5S BCT X05521 ------------------------------------------------------------------------------ Table 11. Part of the keyword phrase index file in the 'ddbjkey.idx'. Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ A CHANNEL DROCHA INV M17155 A COMPONENT SQLCVEA VRL M38183 A LOCUS GORGOGOA3 PRI X54375 GORGOGOA4 PRI X54376 A LOCUS ALLELE GORA0101 PRI X60258 GORA0201 PRI X60259 GORA0401 PRI X60257 GORA0501 PRI X60256 A MULTI-GENE FAMILY RICGLUTE PLN D00584 A PROTEIN MS2AAR PHG M25187 ST1APCS PHG M25396 A SEQUENCE HS5TOA30 VRL D00148 HS5TOA31 VRL D00147 ------------------------------------------------------------------------------ Table 12. Part of the journal citation index file in 'ddbjjou.idx'. The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ ACTA BIOCHIM. BIOPHYS. SIN. 23, 246-253 (1992) HUMPLASINS HUM M98056 ACTA BIOCHIM. BIOPHYS. SIN. 28, 233-239(1996) TKTII PLN X82230 ACTA BIOCHIM. POL. 24, 301-318 (1977) LUPTRFJ PLN K00345 LUPTRFN PLN K00346 ACTA BIOCHIM. POL. 26, 369-381(1979) HVTRNPHE PLN X02683 ACTA BIOCHIM. POL. 29, 143-149 (1982) EMEMTA PLN M32572 EMEMTB PLN M32573 EMEMTC PLN M32574 EMEMTD PLN M32575 EMEMTE PLN M32576 ACTA BIOCHIM. POL. 34, 21-27 (1987) LUPNOSP PLN M32571 ------------------------------------------------------------------------------ Table 13. Part of the gene name index file in 'ddbjgen.idx'. This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ AACC8 STMAACC8 BCT M55426 AACC9 MPUAACC9 BCT M55427 AACT HUMA1ACM PRI K01500 HUMA1ACMA PRI X00947 HUMA1ACMB PRI M18035 HUMAACT1 PRI M18906 HUMAACT2 PRI M22533 HUMAACTA PRI J05176 AAD INTINTORF BCT L06418 LMOMO229D BCT X17478 AAD A1 ENTAAC3VI BCT M88012 AAD9 ENEAAD9A BCT M69221 AADA LMOMO229A BCT X17479 S52249 BCT S52249 SYNAADA SYN M60473 TRNTAAB BCT M55547 TRNTN21CAS BCT M86913 ------------------------------------------------------------------------------ The files in this release are arranged in the following order with non-labeled format. Category number of number of file name file size entries bases Release note ddbjrel.txt 61762 bacteria1 22820 122483404 ddbjbct1.seq 299018022 bacteria2 25324 123941289 ddbjbct2.seq 299000523 bacteria3 71579 106372393 ddbjbct3.seq 299153005 bacteria4 20231 130487593 ddbjbct4.seq 299001648 bacteria5 38214 84437281 ddbjbct5.seq 217423061 CON 10833 0 ddbjcon.seq 16080918 EST1 92143 34380370 ddbjest1.seq 299000792 EST2 95685 38805207 ddbjest2.seq 299001286 EST3 96917 37634695 ddbjest3.seq 298999994 EST4 89981 27829886 ddbjest4.seq 299000030 EST5 96291 37567513 ddbjest5.seq 299001297 EST6 100266 39862631 ddbjest6.seq 299001445 EST7 99939 38654208 ddbjest7.seq 299001791 EST8 98631 38048104 ddbjest8.seq 299000864 EST9 99979 39647956 ddbjest9.seq 299000662 EST10 101397 39405099 ddbjest10.seq 299001669 EST11 98860 41193252 ddbjest11.seq 299002611 EST12 98016 42370406 ddbjest12.seq 299000283 EST13 108792 44238237 ddbjest13.seq 299000101 EST14 103195 41001826 ddbjest14.seq 299000723 EST15 97721 40872493 ddbjest15.seq 299002749 EST16 96133 43536899 ddbjest16.seq 299002729 EST17 98903 40447196 ddbjest17.seq 299000250 EST18 99235 43007691 ddbjest18.seq 299001254 EST19 96336 40862191 ddbjest19.seq 299001641 EST20 96256 40499263 ddbjest20.seq 298999988 EST21 125544 58649802 ddbjest21.seq 299002308 EST22 95324 59248138 ddbjest22.seq 299001096 EST23 111262 72707633 ddbjest23.seq 299002565 EST24 126041 65000861 ddbjest24.seq 299000292 EST25 128982 61962291 ddbjest25.seq 299001312 EST26 116762 59296099 ddbjest26.seq 299000674 EST27 110483 45150394 ddbjest27.seq 299000172 EST28 89588 23965879 ddbjest28.seq 299000430 EST29 95353 27483216 ddbjest29.seq 299004152 EST30 59141 16372178 ddbjest30.seq 299004913 EST31 58966 16336072 ddbjest31.seq 299003537 EST32 65716 20381219 ddbjest32.seq 299001964 EST33 121025 54447646 ddbjest33.seq 299000812 EST34 108377 53606257 ddbjest34.seq 299002807 EST35 91830 44493613 ddbjest35.seq 299002054 EST36 123960 64780324 ddbjest36.seq 299001746 EST37 109963 51698307 ddbjest37.seq 299002300 EST38 91528 39152759 ddbjest38.seq 299001036 EST39 94634 41502272 ddbjest39.seq 299002373 EST40 96508 40974302 ddbjest40.seq 299000916 EST41 104037 40830861 ddbjest41.seq 299001953 EST42 88943 36456279 ddbjest42.seq 299000678 EST43 91173 41034427 ddbjest43.seq 299001538 EST44 100140 46122829 ddbjest44.seq 299001710 EST45 95369 37777895 ddbjest45.seq 299000593 EST46 102263 39013312 ddbjest46.seq 299001967 EST47 85241 35061985 ddbjest47.seq 299002492 EST48 59009 16486973 ddbjest48.seq 299004812 EST49 58175 18094777 ddbjest49.seq 299003012 EST50 58942 18009586 ddbjest50.seq 299003198 EST51 58733 18531038 ddbjest51.seq 299002634 EST52 58523 17939248 ddbjest52.seq 299001957 EST53 58848 17863269 ddbjest53.seq 299000957 EST54 60030 17519423 ddbjest54.seq 299001663 EST55 59970 19179681 ddbjest55.seq 299003303 EST56 59808 18898615 ddbjest56.seq 299002112 EST57 59546 21877666 ddbjest57.seq 299004733 EST58 55368 32132823 ddbjest58.seq 299001846 EST59 53114 21956349 ddbjest59.seq 299003437 EST60 52925 24117889 ddbjest60.seq 299001493 EST61 53353 22020837 ddbjest61.seq 299002867 EST62 70707 31862312 ddbjest62.seq 299000636 EST63 97134 38480785 ddbjest63.seq 299000031 EST64 96345 40420030 ddbjest64.seq 299003006 EST65 100307 56478295 ddbjest65.seq 299002376 EST66 100446 55445359 ddbjest66.seq 299000544 EST67 102333 50448239 ddbjest67.seq 299002247 EST68 94159 52662381 ddbjest68.seq 298999978 EST69 94577 45029581 ddbjest69.seq 299000554 EST70 93527 49543518 ddbjest70.seq 299002452 EST71 101259 59268754 ddbjest71.seq 299002357 EST72 86213 44112385 ddbjest72.seq 299000484 EST73 96148 50206070 ddbjest73.seq 299000955 EST74 94400 60841632 ddbjest74.seq 299000933 EST75 92130 59910315 ddbjest75.seq 299002973 EST76 94217 42344423 ddbjest76.seq 299001945 EST77 90753 41222490 ddbjest77.seq 299000586 EST78 85912 49835005 ddbjest78.seq 299002181 EST79 91006 52367043 ddbjest79.seq 299002374 EST80 96194 44459322 ddbjest80.seq 299002863 EST81 96857 43903398 ddbjest81.seq 299002357 EST82 97261 40099303 ddbjest82.seq 299001836 EST83 93625 47202585 ddbjest83.seq 299000748 EST84 96938 54692848 ddbjest84.seq 299000360 EST85 102959 60314734 ddbjest85.seq 299001740 EST86 92036 58614857 ddbjest86.seq 299000113 EST87 91298 58911378 ddbjest87.seq 299002510 EST88 91642 59381685 ddbjest88.seq 299000036 EST89 98496 58048268 ddbjest89.seq 299002390 EST90 95477 57662732 ddbjest90.seq 299000797 EST91 96707 64846413 ddbjest91.seq 299000435 EST92 98468 60582125 ddbjest92.seq 299002714 EST93 98998 38549102 ddbjest93.seq 299000590 EST94 106111 56109941 ddbjest94.seq 299002742 EST95 97396 56947729 ddbjest95.seq 299002860 EST96 84282 44694038 ddbjest96.seq 299001844 EST97 94940 51529886 ddbjest97.seq 299002144 EST98 86706 49351969 ddbjest98.seq 299000292 EST99 93507 55034164 ddbjest99.seq 299001139 EST100 92228 56784984 ddbjest100.seq 299003301 EST101 90986 51888101 ddbjest101.seq 299001196 EST102 93921 55891862 ddbjest102.seq 299000043 EST103 79420 48343555 ddbjest103.seq 299002468 EST104 113981 61695193 ddbjest104.seq 299000930 EST105 101820 57437788 ddbjest105.seq 299000516 EST106 113576 59622721 ddbjest106.seq 299000783 EST107 123046 65779109 ddbjest107.seq 299001119 EST108 111865 62442704 ddbjest108.seq 299001056 EST109 99244 58408668 ddbjest109.seq 299002146 EST110 86510 42281735 ddbjest110.seq 299001520 EST111 78232 38168064 ddbjest111.seq 299002464 EST112 81553 41025510 ddbjest112.seq 298999988 EST113 72448 36712131 ddbjest113.seq 299006184 EST114 100922 69018097 ddbjest114.seq 299002940 EST115 86504 54344538 ddbjest115.seq 299000882 EST116 100163 58019686 ddbjest116.seq 299001293 EST117 79673 39876251 ddbjest117.seq 299002092 EST118 85062 50290594 ddbjest118.seq 299001723 EST119 86250 54497745 ddbjest119.seq 299001924 EST120 88735 49841605 ddbjest120.seq 299000566 EST121 89558 54800739 ddbjest121.seq 299000155 EST122 89213 50815533 ddbjest122.seq 299000410 EST123 79933 52090679 ddbjest123.seq 299000223 EST124 91038 41037180 ddbjest124.seq 299001885 EST125 98977 50104421 ddbjest125.seq 299001192 EST126 98249 52572983 ddbjest126.seq 299000547 EST127 85690 43639371 ddbjest127.seq 299003652 EST128 90950 66668666 ddbjest128.seq 299000550 EST129 89150 52340580 ddbjest129.seq 299002610 EST130 88824 54910305 ddbjest130.seq 299001463 EST131 90959 63983404 ddbjest131.seq 299001279 EST132 92419 47894472 ddbjest132.seq 299000955 EST133 90713 71553231 ddbjest133.seq 299002498 EST134 85918 64821417 ddbjest134.seq 299000120 EST135 83049 60444098 ddbjest135.seq 298999971 EST136 84215 60574766 ddbjest136.seq 299002290 EST137 85573 63467731 ddbjest137.seq 299000436 EST138 82481 56024786 ddbjest138.seq 299001768 EST139 82261 46378754 ddbjest139.seq 299000932 EST140 86822 49862879 ddbjest140.seq 299001455 EST141 115391 64749795 ddbjest141.seq 299001851 EST142 93607 61320466 ddbjest142.seq 299000600 EST143 121647 75522456 ddbjest143.seq 299002122 EST144 128925 77803022 ddbjest144.seq 299001015 EST145 113282 67312074 ddbjest145.seq 299002519 EST146 73323 35012217 ddbjest146.seq 299001097 EST147 56603 21273485 ddbjest147.seq 299001429 EST148 55554 19549250 ddbjest148.seq 299003383 EST149 55377 20057801 ddbjest149.seq 299005212 EST150 54841 21002730 ddbjest150.seq 299000632 EST151 54566 22849031 ddbjest151.seq 299001483 EST152 56379 19134562 ddbjest152.seq 299001662 EST153 57052 22331641 ddbjest153.seq 299000788 EST154 55578 23149108 ddbjest154.seq 299003358 EST155 53876 22582190 ddbjest155.seq 299004097 EST156 54039 23121317 ddbjest156.seq 299002310 EST157 54797 22242170 ddbjest157.seq 299002105 EST158 54675 21365361 ddbjest158.seq 299001404 EST159 52749 32656198 ddbjest159.seq 299002057 EST160 94494 40033197 ddbjest160.seq 299001989 EST161 106333 55147638 ddbjest161.seq 299003106 EST162 100337 57699401 ddbjest162.seq 299000985 EST163 82896 60627852 ddbjest163.seq 299002954 EST164 80233 40080185 ddbjest164.seq 299000084 EST165 124776 60721010 ddbjest165.seq 299000940 EST166 106723 56988737 ddbjest166.seq 299000051 EST167 83231 41483163 ddbjest167.seq 299002010 EST168 91737 56070971 ddbjest168.seq 299001623 EST169 95204 45353324 ddbjest169.seq 299002150 EST170 90450 51532533 ddbjest170.seq 299002865 EST171 113685 52891923 ddbjest171.seq 299001974 EST172 98191 33242272 ddbjest172.seq 298999972 EST173 94240 35044896 ddbjest173.seq 299002294 EST174 96490 34329326 ddbjest174.seq 299001448 EST175 101734 34840408 ddbjest175.seq 299002074 EST176 92876 37541149 ddbjest176.seq 298999977 EST177 55544 20328178 ddbjest177.seq 168748867 GSS1 102791 76032817 ddbjgss1.seq 299000297 GSS2 99822 70800096 ddbjgss2.seq 299002029 GSS3 117919 68480105 ddbjgss3.seq 299001710 GSS4 94495 76029441 ddbjgss4.seq 299002463 GSS5 84605 71222425 ddbjgss5.seq 299000343 GSS6 76947 73531496 ddbjgss6.seq 299000867 GSS7 106120 59342551 ddbjgss7.seq 299000855 GSS8 109960 42044445 ddbjgss8.seq 299002109 GSS9 118652 50991242 ddbjgss9.seq 299000144 GSS10 113746 54424519 ddbjgss10.seq 299000810 GSS11 103203 54705932 ddbjgss11.seq 299001359 GSS12 102708 51372643 ddbjgss12.seq 299001025 GSS13 100651 51371123 ddbjgss13.seq 299000881 GSS14 97361 48951055 ddbjgss14.seq 299000557 GSS15 97823 55042149 ddbjgss15.seq 298999925 GSS16 90889 47246658 ddbjgss16.seq 299001876 GSS17 98039 51345981 ddbjgss17.seq 299003160 GSS18 94194 43775323 ddbjgss18.seq 299002424 GSS19 95151 46699900 ddbjgss19.seq 299002356 GSS20 97379 54561933 ddbjgss20.seq 299001118 GSS21 84040 39204196 ddbjgss21.seq 299002367 GSS22 74704 38589564 ddbjgss22.seq 299002022 GSS23 76742 33289472 ddbjgss23.seq 299001107 GSS24 86037 50912282 ddbjgss24.seq 299001621 GSS25 76097 34903239 ddbjgss25.seq 299000996 GSS26 92083 54853661 ddbjgss26.seq 299001830 GSS27 79463 31124991 ddbjgss27.seq 299002472 GSS28 84745 41157921 ddbjgss28.seq 299000012 GSS29 81967 42248273 ddbjgss29.seq 299000988 GSS30 98354 52805797 ddbjgss30.seq 299002360 GSS31 93336 60968694 ddbjgss31.seq 299000794 GSS32 103956 50216325 ddbjgss32.seq 299003060 GSS33 100978 55151869 ddbjgss33.seq 299001227 GSS34 119167 74100347 ddbjgss34.seq 299001306 GSS35 119576 71836163 ddbjgss35.seq 299000701 GSS36 120352 70240460 ddbjgss36.seq 299002469 GSS37 113582 47531072 ddbjgss37.seq 299000127 GSS38 106247 57860601 ddbjgss38.seq 299001420 GSS39 123844 81607269 ddbjgss39.seq 299002038 GSS40 112342 78268669 ddbjgss40.seq 299003044 GSS41 95879 64167648 ddbjgss41.seq 299001868 GSS42 94978 62587625 ddbjgss42.seq 299001619 GSS43 103759 53754989 ddbjgss43.seq 298999925 GSS44 115378 76943681 ddbjgss44.seq 299001460 GSS45 110613 79194381 ddbjgss45.seq 299001004 GSS46 121601 74087478 ddbjgss46.seq 299000025 GSS47 78624 33714587 ddbjgss47.seq 189560812 HTC 150553 197568685 ddbjhtc.seq 739084556 HTG1 1576 227745719 ddbjhtg1.seq 299066979 HTG2 3386 224527397 ddbjhtg2.seq 299028573 HTG3 2890 226035382 ddbjhtg3.seq 299068665 HTG4 2065 226264825 ddbjhtg4.seq 299064385 HTG5 1538 224721738 ddbjhtg5.seq 299119500 HTG6 1504 224984200 ddbjhtg6.seq 299016168 HTG7 1536 224748864 ddbjhtg7.seq 299224208 HTG8 1376 227658776 ddbjhtg8.seq 299219995 HTG9 1727 224019162 ddbjhtg9.seq 299014809 HTG10 1299 228703905 ddbjhtg10.seq 299210224 HTG11 865 230466388 ddbjhtg11.seq 299304762 HTG12 878 230293917 ddbjhtg12.seq 299142639 HTG13 909 230266409 ddbjhtg13.seq 299111725 HTG14 908 230282011 ddbjhtg14.seq 299181999 HTG15 904 230464702 ddbjhtg15.seq 299183878 HTG16 2348 215404797 ddbjhtg16.seq 299104812 HTG17 1203 227133253 ddbjhtg17.seq 299254754 HTG18 1455 225476933 ddbjhtg18.seq 299110991 HTG19 935 229968629 ddbjhtg19.seq 299312115 HTG20 1090 228609994 ddbjhtg20.seq 299102784 HTG21 1120 228363120 ddbjhtg21.seq 299053362 HTG22 1107 228586501 ddbjhtg22.seq 299181583 HTG23 948 229882146 ddbjhtg23.seq 299411480 HTG24 1064 229157233 ddbjhtg24.seq 299198580 HTG25 1032 229197374 ddbjhtg25.seq 299129959 HTG26 1189 227821277 ddbjhtg26.seq 299004279 HTG27 1257 226999745 ddbjhtg27.seq 299212764 HTG28 1202 227873329 ddbjhtg28.seq 299247530 HTG29 1238 227579829 ddbjhtg29.seq 299250685 HTG30 1177 227858348 ddbjhtg30.seq 299048651 HTG31 1095 230139258 ddbjhtg31.seq 299281409 HTG32 1289 227709955 ddbjhtg32.seq 299121551 HTG33 1082 229727447 ddbjhtg33.seq 299184396 HTG34 1069 229874266 ddbjhtg34.seq 299142496 HTG35 1031 229476262 ddbjhtg35.seq 299080237 HTG36 1067 229445849 ddbjhtg36.seq 299114745 HTG37 1145 228911111 ddbjhtg37.seq 299239752 HTG38 1187 228962963 ddbjhtg38.seq 299098161 HTG39 1129 229412894 ddbjhtg39.seq 299168739 HTG40 1247 228457064 ddbjhtg40.seq 299214926 HTG41 1425 227017782 ddbjhtg41.seq 299144281 HTG42 1395 227585115 ddbjhtg42.seq 299088773 HTG43 1638 226196439 ddbjhtg43.seq 299009996 HTG44 1414 229165386 ddbjhtg44.seq 299302012 HTG45 1341 230694616 ddbjhtg45.seq 299154878 HTG46 1202 230526082 ddbjhtg46.seq 299252101 HTG47 1531 230691405 ddbjhtg47.seq 299080067 HTG48 1417 232343351 ddbjhtg48.seq 299089450 HTG49 931 153179010 ddbjhtg49.seq 198241752 human1 11031 195383544 ddbjhum1.seq 299078172 human2 1578 212678056 ddbjhum2.seq 299181055 human3 1567 216446208 ddbjhum3.seq 299122555 human4 1348 206443512 ddbjhum4.seq 299077473 human5 1459 214476812 ddbjhum5.seq 299024029 human6 1453 208480948 ddbjhum6.seq 299117554 human7 1527 203845307 ddbjhum7.seq 299043356 human8 1643 211503302 ddbjhum8.seq 299092384 human9 1509 208388524 ddbjhum9.seq 299182026 human10 1804 210628180 ddbjhum10.seq 299106146 human11 4053 209056726 ddbjhum11.seq 299190692 human12 57449 137902775 ddbjhum12.seq 299000981 human13 44947 144259230 ddbjhum13.seq 299052977 human14 4378 203636712 ddbjhum14.seq 299018645 human15 2090 215670314 ddbjhum15.seq 299063485 human16 2417 217279866 ddbjhum16.seq 299132419 human17 2797 221447232 ddbjhum17.seq 299061156 human18 4266 219157282 ddbjhum18.seq 299103776 human19 51754 130536393 ddbjhum19.seq 299000584 human20 51765 90951718 ddbjhum20.seq 222625647 invertebrates1 9471 212405529 ddbjinv1.seq 299128650 invertebrates2 13200 175991699 ddbjinv2.seq 299002263 invertebrates3 80413 104542199 ddbjinv3.seq 299007548 invertebrates4 53082 118671721 ddbjinv4.seq 299031225 invertebrates5 1794 22613814 ddbjinv5.seq 41743240 mammals 47231 54318638 ddbjmam.seq 158539508 patens1 265315 93815536 ddbjpat1.seq 299005245 patens2 167527 107624233 ddbjpat2.seq 299001647 patens3 139999 132222897 ddbjpat3.seq 299000437 patens4 187408 90905435 ddbjpat4.seq 299001262 patens5 139332 68645418 ddbjpat5.seq 299000449 patens6 120050 43535057 ddbjpat6.seq 177648662 phages 2283 7503379 ddbjphg.seq 19440421 plants1 19514 173924951 ddbjpln1.seq 299001982 plants2 90239 97482675 ddbjpln2.seq 299001126 plants3 76424 100392395 ddbjpln3.seq 299128623 plants4 16210 188509941 ddbjpln4.seq 299004605 plants5 71135 88503656 ddbjpln5.seq 299007147 plants6 21117 46628866 ddbjpln6.seq 114476101 primates 17781 39472904 ddbjpri.seq 86711327 rodents1 7038 218137900 ddbjrod1.seq 299241772 rodents2 29727 184631955 ddbjrod2.seq 299000005 rodents3 2543 230516997 ddbjrod3.seq 299235870 rodents4 1480 232094721 ddbjrod4.seq 299016178 rodents5 54358 135244956 ddbjrod5.seq 299002552 rodents6 3054 3522958 ddbjrod6.seq 11031273 STS 159150 67402928 ddbjsts.seq 429695167 synthetic DNAs 7851 14200645 ddbjsyn.seq 34899371 TPA 193 3971823 ddbjtpa.seq 6625488 unannotated sequences 628 336087 ddbjuna.seq 1433060 viruses1 88899 76425454 ddbjvrl1.seq 299000179 viruses2 88371 81639650 ddbjvrl2.seq 297816612 vertebrates 98163 183302692 ddbjvrt.seq 438098160 Accession number index file 0 0 ddbjacc.idx 906125233 Gene name index file 0 0 ddbjgen.idx 47506169 Journal citation index file 0 0 ddbjjou.idx 1069135603 Keyword phrase index file 0 0 ddbjkey.idx 853760185 ------------------------------------------------------- EST: expressed sequence tag CON: Contig sequences GSS: genome survey sequence HTC: high throughput cDNA HTG: high throughput genome sequence STS: sequence tagged site TPA: third party annotation