DNA Data Bank of Japan DNA Database Release 54, Jun. 2003, including 25,149,821 entries, 32,162,041,177 bases This database may be copied and redistributed without permission on the condition that all the statements in this release note are reproduced in each copy. The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank, and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of May 29, 2003. This unified database was made possible thanks to the international collaboration among the three data banks. All the entries have accordingly been annotated using the feature keys common to them. All the entries designated by the accession numbers with the prefixes "C", "D", "E", "AB", "AG", "AK", "AP", "AT", "AU", "AV", "BA", "BB", "BD", "BJ", "BP", "BW" and "BY" have been collected and processed by DDBJ, and the rest have been prepared by GenBank and EMBL/EBI. There have been a number of genome projects going on worldwide. Among them human genome projects have probably been most productive and yielded a large number of ordinary sequences, huge amounts of ESTs and quantities of genome sequences. Thus, we have the human(HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. The HUM division in this release was recorded in 21 files each of which had 300 MB storage capacity. Incidentally, the BCT, HTC, INV, PLN, ROD, STS, VRL and VRT divisions were recorded in 6, 3, 5, 6, 6, 2, 3, 2 files, respectively. Note that the EST division also contains human sequences. The present release does not have the ORG division. Thus, if you are interested in human mitochondrial sequences, for example, you are now advised to refer to the HUM division. This release also includes a division (PAT) for patent data. The patent data are those which the Japanese Patent Office (JPO), United States Patent and Trademark Office (USPTO), and the European Patent Office (EPO) collected and processed. The accession numbers of the patent data collected by the Japanese Patent Office start with the prefix "E" and "BD", those collected and supplied by USPTO and GenBank respectively start with "I" and "AR", and those collected and supplied by EPO and EMBL/EBI respectively start with "A" and "AX". The entries with the prefixes "I", "AR", "A", "AX", "E" and "BD" were allocated to seven files (ddbjpat1.seq - ddbjpat7.seq) in the DDBJ format. Note also that unauthorized use of the patent data may cause legal issues for which we take no responsibility. In the present release, the SOURCE in the flat file was revisited and revised if necessary in accordance with the unified taxonomy database common to the three data banks. The number of ESTs has been increasing at an enormous rate and is expected to be growing even more rapidly in the future. Therefore, EST data were stored in 185 files each of which had the same storage capacity as the file of the HUM division. The present release includes the GSS division. GSS stands for the Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. This division was recorded in 53 files similarly to the HUM division. This release also includes the High Throughput Genomic Sequence (HTGS), which comes mainly from genome project teams which deal with a clone as a sequencing unit. HTGS in this release were recorded in 52 files similarly to the HUM division. The index files are not presented in this release except for ddbjacc.idx, ddbjgen.idx, ddbjjou.idx, and ddbjkey.idx. Instead, we have included a program by which to make the index files not presented in this release. For the use of the program, see the files, seq2indexes.doc, seq2indexes.c, and seq2indexes.h in this release. The present release contains amino acid sequences that were translated from the corresponding nucleotide sequences in our database. In the translation we paid much attention to the fact that some species or organella have a codon different from the universal one, and used the proper codon table. If you find an incorrect codon in a translated sequence, please let us know. The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence (see Table 1). It is expressed like AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. We terminated the RNA division. The RNA data were redistributed according to the category of the organism. Therefore, you will find a human RNA sequence, for example, in the HUM division. The present release includes a division, CON. The CON division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. The current number of the entries of this division is 11079. The present release also includes, HTC (High Throughput cDNA). The definition of the HTC division is as follows. This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. From release 51, TPA (Third Party Annotation) data were available. From this release, '/sequenced_mol' qualifier was changed to '/mol_type' qualifier. We accordingly completed retrofitting the pertinent entries. This change was made on the agreement at the INSD international collaborative meeting in 2002. /mol_type qualifier Definition: in vivo molecule type Value format: molecule type where molecule type is limited to followings; "genomic DNA", "genomic RNA", "mRNA" (incl. EST), "tRNA", "rRNA", "snoRNA", "snRNA", "scRNA", "pre-mRNA", "other RNA" (incl. synthetic), "other DNA" (incl. synthetic), "unassigned DNA" (incl. unknown), "unassigned RNA" (incl. unknown) This release is published by the following DDBJ staff. T. Gojobori, Y. Tateno, K. Nishikawa, H. Sugawara, N. Saitou, S. Miyazaki, K. Ikeo, K. Fukami-Kobayashi, Y. Suzuki, S. Fukuchi, A. Kinjo, H. Aono, M. Ejima, N. Endo, Y. Fujisawa, M. Gojobori, H. Hashimoto, A. Hashizume, T. Hirai, N. Hoshi, H. Ichikawa, K. Ichikawa, T. Iizuka, N. Ishizaka, T. Kato, T. Kawamoto, J. Kohira, Ta. Koike, To. Koike, T. Kosuge, A. Kusakabe, K. Mamiya, N. Maruyama, J. Mashima, M. Matsuo, K. Mimura, S. Misu, N. Murakata, S. Nagira, M. Nagura, N. Nishinomiya, T. Okido, K. Sakai, Y. Shigemoto, Y. Sugisaki, F. Sugiyama, M. Suzuki, T. Takaki, H. Tsutsui, M. Tuboi, K. Watanabe, M. Yamaguchi, Y. Yamamoto, E. Yokoyama, K. Yoshioka Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Mishima 411-8540, Japan Phone: +81 55 981 6853 FAX: +81 55 981 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp/ (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp/ (for DDBJ sequence data submission system) Acknowledgement: We are grateful to NCBI and EMBL/EBI for a firm friendship and an excellent collaboration with us. We also thank the Japanese Patent Office for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ Database Release History Release Date Entries Bases Comments 54 06/03 25,149,821 32,162,041,177 53 02/03 23,250,813 29,711,299,332 52 12/02 20,354,812 26,931,456,316 51 09/02 18,401,358 22,782,404,136 TPA started 50 06/02 17,260,693 20,158,357,982 49 04/02 16,503,157 18,579,627,226 48 01/02 15,016,100 16,197,713,855 47 10/01 13,266,610 14,145,671,645 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------------------------------------------------------------ This release covers 20 categories of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct.*** Category for bacteria ddbjest.*** Category for EST (expressed sequence tag) ddbjcon.*** Category for CON (Contig sequences) ddbjhtc.*** Category for HTC (high throughput cDNA) ddbjhtg.*** Category for HTG (high throughput genomic sequence) ddbjhum.*** Category for human ddbjgss.*** Category for GSS (Genome Survey Sequence) ddbjinv.*** Category for invertebrates ddbjmam.*** Category for mammals other than primates and rodents ddbjpat.*** Category for patents ddbjphg.*** Category for phages ddbjpln.*** Category for plants ddbjpri.*** Category for primates other than human ddbjrod.*** Category for rodents ddbjsts.*** Category for STS (sequence tagged site) ddbjsyn.*** Category for synthetic DNAs ddbjtpa.*** Category for TPA (Third Party Annotation) ddbjuna.*** Category for unannotated sequences ddbjvrl.*** Category for viruses ddbjvrt.*** Category for vertebrates other than mammals ------------------------------------------------------------------------------ Each category then has the following nine files. Note that all the files except for ddbj***.seq are created by the user by use of seq2indexes as mentioned in the release note. ------------------------------------------------------------------------------ ddbj***.seq List of an entry in DDBJ format, see Table 1. ddbj***.acc List of the accession numbers, see Table 2 . ddbj***.aut List of the authors, see Table 3. ddbj***.dir List of the short directory in DDBJ style, see Table 4. ddbj***.idx List of indices, see Table 5. ddbj***.jou List of the journals, see Table 6. ddbj***.key List of the key words, see Table 7. ddbj***.org List of the species names, see Table 8. ddbj***.sdr List of the short directory in DDBJ style, see Table 9. ------------------------------------------------------------------------------ The format of LOCUS line in the flat file was changed as shown below to adjust to the GenBank format from release 51. ------------------------------------------------------------------------------ Old (-rel. 50): LOCUS AB000001 660 bp DNA PLN 01-FEB-2001 Present (rel. 51-): LOCUS AB000001 660 bp DNA linear PLN 01-FEB-2001 New format specification: --------- -------- Positions Contents --------- -------- 01-05 'LOCUS' 06-12 spaces 13-28 Locus name 29-29 space 30-40 Length of sequence, right-justified 41-41 space 42-43 bp 44-44 space 45-47 spaces, ss- (single-stranded), ds- (double-stranded), or ms- (mixed-stranded) 48-53 DNA, RNA, tRNA (transfer RNA), rRNA (ribosomal RNA), mRNA (messenger RNA), uRNA (small nuclear RNA), scRNA, snRNA, snoRNA. Left justified. 54-55 space 56-63 'linear' followed by two spaces, or 'circular' 64-64 space 65-67 The division code 68-68 space 69-79 Date, in the form dd-MMM-yyyy (e.g., 15-MAR-1991) ------------------------------------------------------------------------------ Table 1. Part of the contents in the file 'ddbjbct.seq'. This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA linear BCT 14-APR-2000 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, Truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli (strain:W3110) cDNA to mRNA. ORGANISM Escherichia coli Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Miki Jishage, National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail:mjishage@lab.nig.ac.jp, Tel:0559-81-6742, Fax:0559-81-6746) REFERENCE 2 (bases 1 to 993) AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol. Gen. Genet. 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /organism="Escherichia coli" /sequenced_mol="cDNA to mRNA" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /transl_table=11 /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK" variation 75 /citation=[3] /replace="t" variation 97 /citation=[3] /replace="t" variation 99 /citation=[3] /replace="t" variation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t 0 others ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ Table 2. Part of the contents in the file 'ddbjbct.acc'. The first column refers to the secondary accession number, second column to the locus name, and third to the primary accession number. The primary number may be the same as the secondary number. They are arranged in the ascending order of the secondary accession numbers. ------------------------------------------------------------------------------ D00001 -> ECOPBPAA X04516 D00002 -> ECOPYRH X04469 D00006 -> PNS981TET D00006 D00020 -> COLE2LYS D00020 D00021 -> COLE31YS D00021 D00038 -> BRLAM330 D00038 D00066 -> BAC139AC D00066 D00067 -> ECONANA M20207 D00069 -> ECOUVRD2 D00069 D00087 -> BACXYNAA D00087 ------------------------------------------------------------------------------ Table 3. Part of the contents in the file 'ddbjbct.aut'. For each author name given on the left to the arrow, the corresponding locus name and primary accession number are respectively listed on the right. They are arranged in the alphabetical order of the author names. ------------------------------------------------------------------------------ Aan,F. -> STYCRR X05210 Aan,F. -> STYENZI M76176 Aaronson,W. -> ECOKPSD M64977 Aaronson,W. -> ECONEUA J05023 Abad-Lapuebla,M.A. -> VIBTDHI D90238 Abdel-Mawgood,A.L. -> CYAPSBHA X16394 Abdel-Meguid,S.S. -> TRNGDRECM J01843 Abdelal,A. -> STYCARA M36540 Abdelal,A. -> STYCARAB X13200 Abdelal,A.H. -> PSENOSA M60717 ------------------------------------------------------------------------------ Table 4. Part of the short directory in DDBJ style in the file 'ddbjbct.dir'. For each locus name given in the first column, the corresponding primary accession number, molecular type, number of nucleotide pairs, and description for the locus are respectively listed. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ ABCAARAA M34830 ds-DNA 1624 A.aceti acetic acid resistance protein (aarA) gene, complete cds. ABCADHCC D00635 ds-DNA 4230 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. ABCALDH D00521 ds-DNA 2683 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. ABCBCSAA M37202 ds-DNA 9540 A.xylinum bcs B, bcs C and bcs D genes, complete cds and bcs A gene, partial cds. ABCCELA M76548 ds-DNA 1165 Acetobacter xylinum UDP pyrophosphorylase (celA) gene, complete cds. ABCCELSYN X54676 ds-DNA 5363 A. xylinum gene for cellulose biosynthesis ABCIS1380 D10043 ds-DNA 1665 A.pasteurianus insertion sequence IS1380. ACAADH1 D90004 ds-DNA 2467 Acetobacter aceti(K6033) alcohol dehydrogenase subunit gene(adh1). ACCAAC2 M62833 ds-DNA 1123 Acinetobacter baumannii aminoglycoside acetyltr ansferase (aac2) gene, complete cds. ACCACEAA M62822 ds-DNA 1874 A.baumannii chloramphenicol acetyltransferase (cat) gene, complete cds. ------------------------------------------------------------------------------ Table 5. Part of the contents in the file 'ddbjbct.idx'. The first column refers to the locus name, second column to the starting site of the locus in byte, and third to its ending site in byte. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ %***************************** #ABCAARAA 0 3211 #ABCADHCC 3212 10608 #ABCALDH 10609 15864 #ABCBCSAA 15865 29583 #ABCCELA 29584 32289 #ABCCELSYN 32290 40960 #ABCIS1380 40961 44711 #ACAADH1 44712 49357 #ACCAAC2 49358 52395 ------------------------------------------------------------------------------ Table 6. Part of the contents in the file 'ddbjbct.jou'. This gives information on the journal in which sequence data were published. ------------------------------------------------------------------------------ (in) Chaloupka,J. and Krumphanzl,V. (Eds.); Extracellular Enzymes of Microorganisms: 129-137, Plenum Press, New York (1987) -> BACAMYABS M57457 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16S M55011 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SA M55006 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SB M55008 (in) Hoch,J.A. and Setlow,P. (Eds.); Molecular Biology of Microbial Differentiation: 85-94, American Society for Microbiology, Washington, DC (1985) -> BACSPOII M57606 (in) Holmgren,A. (Ed.); Thioredoxin and Glutaredoxin Systems: Structure and Function: 11-19, Unknown name, Unknown city (1986) -> ECOTRXA1 M54881 (in) Kjeldgaard,N.C. and Maaloe,O. (Eds.); Control of ribosome synthesis: 138-143, Academic Press, New York (1976) -> ECOLAC J01636 (in) Losick,R. and Chamberlin,M. (Eds.); RNA polymerase: 455-472, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1976) -> ECOTGY1 K01197 (in) Sikes,C.S. and Wheeler,A.P. (Eds.); Surface reactive peptides and polymers. Discovery and commercialization.: 186-200, American Chemical Society, Washington, D.C. (1991) -> ECOTGP J01714 (in) Sund,H. and Blauer,G. (Eds.); Protein-Ligand Interactions: 193-207, Walter de Gruyter, New York (1975) -> ECOLAC J01636 (in) Wu,R. and Grossman,L. (Eds.); Methods in Enzymology, Recombinant DNA, part E: In press, Academic Press, New York, N.Y. (1986) -> PLMCG M11320 Acta Microbiol. Pol. 35, 175-190 (1986) -> ECOTGG1 M54893 Actinomycetologica 5, 14-17 (1991) -> STMARGG D00799 Adv. Biophys. 21, 115-133 (1986) -> R10REP M26840 Adv. Biophys. 21, 175-192 (1986) -> ECONUSAA M26839 Adv. Enzyme Regul. 21, 225-237 (1983) -> ECOPURFA M26893 Adv. Exp. Med. Biol. 195, 239-246 (1986) -> ECOAPT M14040 Agric. Biol. Chem. 50, 2155-2158 (1986) -> ECONANA M20207 Agric. Biol. Chem. 50, 2771-2778 (1986) -> BRLAM330 D00038 Agric. Biol. Chem. 51, 2019-2022 (1987) -> BACCGT D00129 Agric. Biol. Chem. 51, 2641-2648 (1987) -> STRSAGP D00219 Agric. Biol. Chem. 51, 2807-2809 (1987) -> BACPGECR M35503 Agric. Biol. Chem. 51, 3133-3135 (1987) -> BACXYLAP D00312 Agric. Biol. Chem. 51, 455-463 (1987) -> BACHDCRY D00117 Agric. Biol. Chem. 51, 953-955 (1987) -> BACXYNAA D00087 Agric. Biol. Chem. 52, 1565-1573 (1988) -> BACIP135 D00348 Agric. Biol. Chem. 52, 1785-1789 (1988) -> BACTMR D00343 Agric. Biol. Chem. 52, 2243-2246 (1988) -> PSEGI D00342 Agric. Biol. Chem. 52, 399-406 (1988) -> BACAMYEB M35517 Agric. Biol. Chem. 52, 479-487 (1988) -> ECAPALI D00217 ------------------------------------------------------------------------------ Table 7. Part of the contents in the file 'ddbjbct.key'. For the locus and accession number respectively given on the right to the arrow, the corresponding key words are listed on the left. ------------------------------------------------------------------------------ A.aceti acetic acid resistance protein (aarA) gene, complete cds. -> ABCAARAA M34830 acetic acid resistance protein. -> ABCAARAA M34830 Cloning of genes responsible for acetic acid resistance in acetobacter aceti -> ABCAARAA M34830 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. -> ABCADHCC D00635 alcohol dehydrogenase; cytochrome c. -> ABCADHCC D00635 Cloning and sequencing of the gene cluster encoding two subunits of membrane- bound alcohol dehydrogenase from Acetobacter polyoxogenes -> ABCADHCC D00635 These data kindly submitted in computer readable form by: Toshimi Tamaki Nakano Central Biochemical Institute 2-6 Nakamura-cho Handa-shi, Aichi-ken 475 Japan Phone: 0569-21-3331 Fax: 0569-23-8486 -> ABCADHCC D00635 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. -> ABCALDH D00521 aldehyde dehydrogenase gene; ethanol oxidation; membrane-bound enzyme. -> ABCALDH D00521 Nucleotide sequence of the membrane-bound aldehyde dehydrogenase gene from Acetobacter polyoxogenes -> ABCALDH D00521 ------------------------------------------------------------------------------ Table 8. Part of the contents in the file 'ddbjbct.org'. For the locus and accession number respectively given on the right to the arrow, the corresponding taxonomic names are listed on the left. They are arranged in the alphabetical order of the species names. ------------------------------------------------------------------------------ A. nidulans 6301 DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRUBPS X00019 A. nidulans DNA, clone pAN4. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGGX X00343 A. nidulans DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGG X00512 A. polyoxogenes genomic DNA. Acetobacter polyoxogenes Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. - > ABCADHCC D00635 A. quadruplicatum (strain PR-6) DNA, clone pAQPR1. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUPCAB K02660 A. quadruplicatum (strain PR6) DNA. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUCPCAB K02659 A. vinelandii DNA. Azotobacter vinelandii Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> AVINIFUSV M17349 A.aceti (strain 10-8) DNA, clone pAR1611. Acetobacter aceti Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> ABCAARAA M34830 A.actinomycetemcomitans (strain JP2) DNA, clone lambda-OP8. Actinobacillus actinomycetemcomitans Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Pasteurellaceae. -> ACNLKTXN M27399 A.anitratum DNA, clone pLJD1. Acinetobacter anitratum Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Neisseriaceae. -> ACCCITSYN M33037 ------------------------------------------------------------------------------ Table 9. Part of the short directory file in DDBJ style in the file 'ddbjbct.sdr'. The short directory file contains brief descriptions of all of the sequence entries contained in the DDBJ style. ------------------------------------------------------------------------------ ABCAARAA A.aceti acetic acid resistance protein (aarA) gene, complete 1624bp ABCADHCC A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and 4230bp ABCALDH A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, 2683bp ABCBCSABCD A.xylinum bcs A, B, C and D genes, complete cds's. 9540bp ABCCELA Acetobacter xylinum UDP pyrophosphorylase (celA) gene, 1165bp ABCCELSYN A. xylinum gene for cellulose biosynthesis 5363bp ABCIS1380 A.pasteurianus insertion sequence IS1380. 1665bp ACAADH1 Acetobacter aceti(K6033) alcohol dehydrogenase subunit 2467bp ACCAAC2 Acinetobacter baumannii aminoglycoside acetyltransferase 1123bp ACCACEAA A.baumannii chloramphenicol acetyltransferase (cat) gene, 1874bp ACCAPHA6 Acinetobacter baumannii aphA-6 gene. 1170bp ACCBENABCA A.calcoaceticus BenA, BenB, BenC, BenD, and BenE proteins 15922bp ACCCAT Acinetobacter calcoaceticus cat operon. 15922bp ACCCATAM A.calcoaceticus catA and catM genes, encoding catechol 1, 5537bp ACCCHMO Acinetobacter sp. cyclohexanone monooxygenase gene, complete 2128bp ACCCITSYN A.anitratum citrate synthase gene, complete cds. 1895bp ------------------------------------------------------------------------------ In addition to the 9 tables the four following index files are included in this release. These files were prepared irrespective of the 10 categories of taxonomic divisions. Accession number index file Keyword phrase index file Journal citation index file Gene name index file A brief description is given for each file in the following. Table 10. Part of the accession number index file in the 'ddbjacc.idx'. The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00100 PSEASPAA BCT D00100 D00101 RABNP450R MAM D00101 D00102 HUMLTX HUM D00102 D00103 AFARRN5SA BCT D00103 AFRRN5SA BCT X05517 D00104 AFARRN5SB BCT D00104 AFRRN5SB BCT X05518 D00105 AFARRN5S BCT D00105 ASRRN5S BCT X05524 D00106 ACH5SRR BCT D00106 AXRRN5S BCT X05522 AXRRN5SA BCT X05523 D00107 ACH5SRRX BCT D00107 ACRRN5S BCT X05521 ------------------------------------------------------------------------------ Table 11. Part of the keyword phrase index file in the 'ddbjkey.idx'. Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ A CHANNEL DROCHA INV M17155 A COMPONENT SQLCVEA VRL M38183 A LOCUS GORGOGOA3 PRI X54375 GORGOGOA4 PRI X54376 A LOCUS ALLELE GORA0101 PRI X60258 GORA0201 PRI X60259 GORA0401 PRI X60257 GORA0501 PRI X60256 A MULTI-GENE FAMILY RICGLUTE PLN D00584 A PROTEIN MS2AAR PHG M25187 ST1APCS PHG M25396 A SEQUENCE HS5TOA30 VRL D00148 HS5TOA31 VRL D00147 ------------------------------------------------------------------------------ Table 12. Part of the journal citation index file in 'ddbjjou.idx'. The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ ACTA BIOCHIM. BIOPHYS. SIN. 23, 246-253 (1992) HUMPLASINS HUM M98056 ACTA BIOCHIM. BIOPHYS. SIN. 28, 233-239(1996) TKTII PLN X82230 ACTA BIOCHIM. POL. 24, 301-318 (1977) LUPTRFJ PLN K00345 LUPTRFN PLN K00346 ACTA BIOCHIM. POL. 26, 369-381(1979) HVTRNPHE PLN X02683 ACTA BIOCHIM. POL. 29, 143-149 (1982) EMEMTA PLN M32572 EMEMTB PLN M32573 EMEMTC PLN M32574 EMEMTD PLN M32575 EMEMTE PLN M32576 ACTA BIOCHIM. POL. 34, 21-27 (1987) LUPNOSP PLN M32571 ------------------------------------------------------------------------------ Table 13. Part of the gene name index file in 'ddbjgen.idx'. This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ AACC8 STMAACC8 BCT M55426 AACC9 MPUAACC9 BCT M55427 AACT HUMA1ACM PRI K01500 HUMA1ACMA PRI X00947 HUMA1ACMB PRI M18035 HUMAACT1 PRI M18906 HUMAACT2 PRI M22533 HUMAACTA PRI J05176 AAD INTINTORF BCT L06418 LMOMO229D BCT X17478 AAD A1 ENTAAC3VI BCT M88012 AAD9 ENEAAD9A BCT M69221 AADA LMOMO229A BCT X17479 S52249 BCT S52249 SYNAADA SYN M60473 TRNTAAB BCT M55547 TRNTN21CAS BCT M86913 ------------------------------------------------------------------------------ The files in this release are arranged in the following order with non-labeled format. Category number of number of file name file size entries bases Release note ddbjrel.txt 72652 bacteria1 23804 122067221 ddbjbct1.seq 298999986 bacteria2 6405 131897722 ddbjbct2.seq 299192387 bacteria3 77263 104880029 ddbjbct3.seq 299000933 bacteria4 16572 128459064 ddbjbct4.seq 299456757 bacteria5 52702 116549304 ddbjbct5.seq 299000467 bacteria6 13900 30993581 ddbjbct6.seq 79539340 CON 11079 0 ddbjcon.seq 17143453 EST1 92143 34380370 ddbjest1.seq 299000792 EST2 95685 38805207 ddbjest2.seq 299001286 EST3 96917 37634695 ddbjest3.seq 298999994 EST4 89981 27829886 ddbjest4.seq 299000030 EST5 96291 37567513 ddbjest5.seq 299001297 EST6 100266 39862631 ddbjest6.seq 299001483 EST7 99939 38654208 ddbjest7.seq 299001829 EST8 98636 38050302 ddbjest8.seq 298999978 EST9 99919 39622160 ddbjest9.seq 299000955 EST10 101359 39369696 ddbjest10.seq 299001321 EST11 98988 41268607 ddbjest11.seq 299000812 EST12 97954 42341188 ddbjest12.seq 299000313 EST13 108770 44234734 ddbjest13.seq 299000943 EST14 103155 40991246 ddbjest14.seq 299000666 EST15 97717 40857842 ddbjest15.seq 299002409 EST16 96135 43564156 ddbjest16.seq 299002270 EST17 98890 40421980 ddbjest17.seq 299001816 EST18 99218 42981846 ddbjest18.seq 299001023 EST19 96354 40887473 ddbjest19.seq 299003000 EST20 96255 40497122 ddbjest20.seq 298999950 EST21 125732 58815655 ddbjest21.seq 299000468 EST22 90744 62245200 ddbjest22.seq 299002450 EST23 103262 79616228 ddbjest23.seq 299002499 EST24 124531 64115441 ddbjest24.seq 299002266 EST25 128594 64390723 ddbjest25.seq 299000647 EST26 123030 61634282 ddbjest26.seq 299001782 EST27 121890 52640038 ddbjest27.seq 299000519 EST28 92162 24793048 ddbjest28.seq 299002792 EST29 100691 28792249 ddbjest29.seq 299003495 EST30 61009 16939980 ddbjest30.seq 299002093 EST31 60634 16764284 ddbjest31.seq 299000111 EST32 68394 21543324 ddbjest32.seq 299000379 EST33 125312 56592616 ddbjest33.seq 299001345 EST34 110968 55785413 ddbjest34.seq 299001019 EST35 97513 46088027 ddbjest35.seq 299000265 EST36 136200 71121559 ddbjest36.seq 299000424 EST37 105461 47845144 ddbjest37.seq 299002919 EST38 89240 38853374 ddbjest38.seq 299001523 EST39 95594 41520435 ddbjest39.seq 299002536 EST40 97963 40564530 ddbjest40.seq 299000751 EST41 100018 39551661 ddbjest41.seq 299001847 EST42 85210 36993978 ddbjest42.seq 299003912 EST43 93544 41664674 ddbjest43.seq 299001203 EST44 100991 45101890 ddbjest44.seq 299001344 EST45 97295 37255743 ddbjest45.seq 299001593 EST46 109833 46538408 ddbjest46.seq 299000259 EST47 71000 24396089 ddbjest47.seq 299004610 EST48 60472 17270296 ddbjest48.seq 299000969 EST49 60396 18712862 ddbjest49.seq 299003113 EST50 60466 18630734 ddbjest50.seq 298999931 EST51 60348 19076152 ddbjest51.seq 299001076 EST52 60522 18057060 ddbjest52.seq 299000702 EST53 60785 18706517 ddbjest53.seq 299001013 EST54 61956 18494132 ddbjest54.seq 299002430 EST55 61670 19505667 ddbjest55.seq 298999930 EST56 62321 17894182 ddbjest56.seq 299002240 EST57 58785 32433524 ddbjest57.seq 299003279 EST58 55289 27023471 ddbjest58.seq 299002725 EST59 54932 23221449 ddbjest59.seq 299000603 EST60 54665 23055835 ddbjest60.seq 299001675 EST61 56837 23666572 ddbjest61.seq 299001406 EST62 96673 40079404 ddbjest62.seq 299001592 EST63 96399 38882084 ddbjest63.seq 299001313 EST64 98548 54939299 ddbjest64.seq 299001436 EST65 100781 54065529 ddbjest65.seq 299000873 EST66 99482 48447386 ddbjest66.seq 299000798 EST67 95797 53396530 ddbjest67.seq 299000820 EST68 96244 46204444 ddbjest68.seq 299001913 EST69 96432 56588682 ddbjest69.seq 299002705 EST70 96075 50527481 ddbjest70.seq 299002940 EST71 89594 50722630 ddbjest71.seq 299001887 EST72 93596 46180197 ddbjest72.seq 299000344 EST73 95231 56592949 ddbjest73.seq 299000820 EST74 90434 57741761 ddbjest74.seq 299000334 EST75 98471 52245744 ddbjest75.seq 299001012 EST76 91429 39630446 ddbjest76.seq 299002035 EST77 85072 45470526 ddbjest77.seq 299003338 EST78 88490 49666125 ddbjest78.seq 299001895 EST79 93791 55499418 ddbjest79.seq 299002242 EST80 98318 41865388 ddbjest80.seq 299000381 EST81 97696 35667161 ddbjest81.seq 299000192 EST82 96017 50355782 ddbjest82.seq 299000980 EST83 89176 50145639 ddbjest83.seq 299001766 EST84 105460 56158768 ddbjest84.seq 299001341 EST85 95025 60257041 ddbjest85.seq 299000453 EST86 89183 54937431 ddbjest86.seq 299001515 EST87 93474 63067454 ddbjest87.seq 299001151 EST88 94460 57293290 ddbjest88.seq 299001200 EST89 98023 58919982 ddbjest89.seq 299000631 EST90 94141 62315417 ddbjest90.seq 299002528 EST91 96243 61864491 ddbjest91.seq 299000259 EST92 102786 50233264 ddbjest92.seq 299000350 EST93 101977 45137197 ddbjest93.seq 299001212 EST94 101424 57275543 ddbjest94.seq 299001740 EST95 89885 51873623 ddbjest95.seq 299002398 EST96 89808 45630500 ddbjest96.seq 299002634 EST97 88679 50328952 ddbjest97.seq 299002088 EST98 89607 52475838 ddbjest98.seq 299000165 EST99 94493 56878328 ddbjest99.seq 299002761 EST100 89224 51568390 ddbjest100.seq 299001324 EST101 94235 55522908 ddbjest101.seq 299000131 EST102 91429 55768658 ddbjest102.seq 299001999 EST103 86505 48551064 ddbjest103.seq 299000348 EST104 127342 71353798 ddbjest104.seq 299002038 EST105 103542 54317892 ddbjest105.seq 299001498 EST106 129688 69326820 ddbjest106.seq 299002245 EST107 124873 68195412 ddbjest107.seq 299000921 EST108 107518 62129128 ddbjest108.seq 299001609 EST109 88314 47212503 ddbjest109.seq 299000027 EST110 81519 37807034 ddbjest110.seq 299002080 EST111 76903 39157240 ddbjest111.seq 299002880 EST112 82704 41797988 ddbjest112.seq 299001889 EST113 88731 55279982 ddbjest113.seq 299001685 EST114 88832 58525027 ddbjest114.seq 299002563 EST115 101854 63328927 ddbjest115.seq 299001600 EST116 77294 39512771 ddbjest116.seq 299002258 EST117 85596 50593000 ddbjest117.seq 299003158 EST118 85772 41449038 ddbjest118.seq 299002500 EST119 81360 58158672 ddbjest119.seq 299001001 EST120 102278 55173763 ddbjest120.seq 299002043 EST121 88165 56783866 ddbjest121.seq 299000657 EST122 77575 44811522 ddbjest122.seq 299000225 EST123 89729 53952217 ddbjest123.seq 299001746 EST124 97848 38223017 ddbjest124.seq 299001858 EST125 96219 57209033 ddbjest125.seq 299001436 EST126 91140 46928096 ddbjest126.seq 299002725 EST127 89898 58252630 ddbjest127.seq 299002919 EST128 90159 59650440 ddbjest128.seq 299000658 EST129 89149 45730640 ddbjest129.seq 299000910 EST130 90827 74794513 ddbjest130.seq 299002841 EST131 90715 45795096 ddbjest131.seq 299001222 EST132 90871 59064369 ddbjest132.seq 299000162 EST133 89639 72666476 ddbjest133.seq 299001276 EST134 83199 61090113 ddbjest134.seq 299003553 EST135 83020 60781791 ddbjest135.seq 299000084 EST136 84174 59519698 ddbjest136.seq 299001980 EST137 84055 62233154 ddbjest137.seq 299001030 EST138 83343 50055567 ddbjest138.seq 299001184 EST139 82222 46256064 ddbjest139.seq 299003780 EST140 104257 57679747 ddbjest140.seq 298999969 EST141 103609 69206614 ddbjest141.seq 299002055 EST142 110114 65901898 ddbjest142.seq 299000547 EST143 135119 83259971 ddbjest143.seq 299002161 EST144 131514 77759688 ddbjest144.seq 299002513 EST145 85022 47380693 ddbjest145.seq 299003196 EST146 86725 83074113 ddbjest146.seq 299002585 EST147 94497 84019303 ddbjest147.seq 299000022 EST148 73526 32361827 ddbjest148.seq 299002866 EST149 57324 21323695 ddbjest149.seq 299002547 EST150 58501 20267381 ddbjest150.seq 299004499 EST151 56389 20651969 ddbjest151.seq 298999976 EST152 56347 23139105 ddbjest152.seq 299002454 EST153 56668 22003890 ddbjest153.seq 299003690 EST154 58491 20290220 ddbjest154.seq 299002523 EST155 58872 23540107 ddbjest155.seq 299000428 EST156 55660 24491933 ddbjest156.seq 299003195 EST157 55870 22571128 ddbjest157.seq 299001240 EST158 56060 23940143 ddbjest158.seq 299002277 EST159 56491 22306267 ddbjest159.seq 299001806 EST160 55280 27909242 ddbjest160.seq 299004080 EST161 65890 37224239 ddbjest161.seq 299000307 EST162 123532 52637854 ddbjest162.seq 299001427 EST163 98435 58079570 ddbjest163.seq 299000500 EST164 88945 55339899 ddbjest164.seq 299001674 EST165 81912 42716006 ddbjest165.seq 299001996 EST166 118717 57936193 ddbjest166.seq 299001468 EST167 110306 57858145 ddbjest167.seq 299000378 EST168 84194 42859092 ddbjest168.seq 299001835 EST169 90566 54261343 ddbjest169.seq 299002269 EST170 95327 46637466 ddbjest170.seq 298999999 EST171 92182 47644955 ddbjest171.seq 299003166 EST172 88452 54144350 ddbjest172.seq 299000167 EST173 87776 47957956 ddbjest173.seq 299000685 EST174 110786 58236310 ddbjest174.seq 299000776 EST175 103343 67733484 ddbjest175.seq 299002190 EST176 116804 70327682 ddbjest176.seq 299001625 EST177 120880 61316994 ddbjest177.seq 299002828 EST178 96181 54574787 ddbjest178.seq 299001886 EST179 95250 60582883 ddbjest179.seq 299001386 EST180 117410 39557338 ddbjest180.seq 299002549 EST181 93786 33809239 ddbjest181.seq 299002352 EST182 95398 34693831 ddbjest182.seq 299003029 EST183 100987 35145690 ddbjest183.seq 299001494 EST184 96238 35342691 ddbjest184.seq 299000706 EST185 90750 35896033 ddbjest185.seq 286012904 GSS1 105377 78032000 ddbjgss1.seq 299002453 GSS2 105114 72333483 ddbjgss2.seq 299001843 GSS3 116890 70787738 ddbjgss3.seq 298999944 GSS4 92528 74105431 ddbjgss4.seq 299002571 GSS5 83134 70280432 ddbjgss5.seq 299001671 GSS6 75544 72315279 ddbjgss6.seq 299002684 GSS7 107364 59339442 ddbjgss7.seq 299001099 GSS8 109488 41625269 ddbjgss8.seq 299000991 GSS9 118642 51062875 ddbjgss9.seq 299001714 GSS10 113307 54341101 ddbjgss10.seq 299003502 GSS11 103565 54826077 ddbjgss11.seq 299000989 GSS12 102351 51145939 ddbjgss12.seq 299001845 GSS13 100757 51402337 ddbjgss13.seq 299001992 GSS14 97018 48945468 ddbjgss14.seq 299001371 GSS15 98293 55270679 ddbjgss15.seq 299000771 GSS16 90774 47236518 ddbjgss16.seq 299001061 GSS17 97946 51143280 ddbjgss17.seq 298999942 GSS18 94261 43689102 ddbjgss18.seq 299003032 GSS19 95396 47051589 ddbjgss19.seq 299001214 GSS20 97103 54277991 ddbjgss20.seq 299002880 GSS21 83675 39068511 ddbjgss21.seq 299002866 GSS22 74707 38581660 ddbjgss22.seq 299001914 GSS23 76749 33269361 ddbjgss23.seq 299000025 GSS24 86051 50829780 ddbjgss24.seq 299002053 GSS25 76074 34966281 ddbjgss25.seq 299002986 GSS26 92582 55122878 ddbjgss26.seq 299001944 GSS27 78992 30780122 ddbjgss27.seq 298999996 GSS28 85669 41382220 ddbjgss28.seq 299002563 GSS29 80985 42235063 ddbjgss29.seq 299003656 GSS30 98821 53110060 ddbjgss30.seq 299002000 GSS31 93502 60745953 ddbjgss31.seq 299000018 GSS32 103841 50404518 ddbjgss32.seq 299002291 GSS33 98349 53662812 ddbjgss33.seq 299002212 GSS34 117712 73074823 ddbjgss34.seq 299000743 GSS35 119882 72596795 ddbjgss35.seq 299002787 GSS36 120318 70220700 ddbjgss36.seq 299000911 GSS37 113645 47660958 ddbjgss37.seq 299001225 GSS38 106293 57090889 ddbjgss38.seq 299000994 GSS39 123417 81363987 ddbjgss39.seq 299001816 GSS40 111749 73072470 ddbjgss40.seq 299002082 GSS41 96999 65943170 ddbjgss41.seq 299002638 GSS42 94983 62576855 ddbjgss42.seq 299000389 GSS43 103159 54291388 ddbjgss43.seq 299001634 GSS44 111000 71899533 ddbjgss44.seq 299001679 GSS45 114182 89333372 ddbjgss45.seq 299002437 GSS46 118993 68846664 ddbjgss46.seq 299000741 GSS47 115549 77199406 ddbjgss47.seq 299000735 GSS48 107331 65043104 ddbjgss48.seq 299000839 GSS49 119918 58479911 ddbjgss49.seq 299000860 GSS50 113995 66811150 ddbjgss50.seq 299000633 GSS51 97908 91201854 ddbjgss51.seq 299001380 GSS52 102175 96995610 ddbjgss52.seq 299001031 GSS53 104516 74569227 ddbjgss53.seq 255893851 HTC1 38049 68464491 ddbjhtc1.seq 299005556 HTC2 52132 88377287 ddbjhtc2.seq 299001983 HTC3 61736 43056037 ddbjhtc3.seq 138250727 HTG1 1584 227571671 ddbjhtg1.seq 299005149 HTG2 3380 224493102 ddbjhtg2.seq 299092260 HTG3 3029 225997872 ddbjhtg3.seq 299024679 HTG4 1930 226053056 ddbjhtg4.seq 299116246 HTG5 1542 224526144 ddbjhtg5.seq 299013441 HTG6 1502 224970128 ddbjhtg6.seq 299123851 HTG7 1539 224643293 ddbjhtg7.seq 299186444 HTG8 1350 227825199 ddbjhtg8.seq 299068368 HTG9 1833 222968719 ddbjhtg9.seq 299208363 HTG10 1178 229539825 ddbjhtg10.seq 299139736 HTG11 900 230118694 ddbjhtg11.seq 299066699 HTG12 890 230262495 ddbjhtg12.seq 299251581 HTG13 959 229954102 ddbjhtg13.seq 299015913 HTG14 919 230230046 ddbjhtg14.seq 299295881 HTG15 1342 226330412 ddbjhtg15.seq 299061297 HTG16 2039 218486985 ddbjhtg16.seq 299087404 HTG17 1097 228611228 ddbjhtg17.seq 299218022 HTG18 1445 225850393 ddbjhtg18.seq 299264016 HTG19 933 229939066 ddbjhtg19.seq 299160276 HTG20 1122 228633469 ddbjhtg20.seq 299211529 HTG21 1092 229017406 ddbjhtg21.seq 299192912 HTG22 1073 228818072 ddbjhtg22.seq 299042996 HTG23 926 229966049 ddbjhtg23.seq 299050092 HTG24 1075 229239493 ddbjhtg24.seq 299361516 HTG25 1064 229279788 ddbjhtg25.seq 299126502 HTG26 1100 228837571 ddbjhtg26.seq 299285130 HTG27 1193 228272032 ddbjhtg27.seq 299122088 HTG28 1140 228645536 ddbjhtg28.seq 299164699 HTG29 1190 228206434 ddbjhtg29.seq 299020046 HTG30 1072 229047071 ddbjhtg30.seq 299058918 HTG31 1074 230003601 ddbjhtg31.seq 299260619 HTG32 1246 228573509 ddbjhtg32.seq 299093178 HTG33 1090 229270287 ddbjhtg33.seq 299107520 HTG34 1037 229938580 ddbjhtg34.seq 299087828 HTG35 1006 229523308 ddbjhtg35.seq 299072318 HTG36 1075 229297076 ddbjhtg36.seq 299128549 HTG37 1190 228729446 ddbjhtg37.seq 299093034 HTG38 1092 230561416 ddbjhtg38.seq 299789467 HTG39 1172 228946140 ddbjhtg39.seq 299185795 HTG40 1277 228290368 ddbjhtg40.seq 299005753 HTG41 1464 226519181 ddbjhtg41.seq 299109607 HTG42 1429 227794356 ddbjhtg42.seq 299095251 HTG43 1388 228401022 ddbjhtg43.seq 299069306 HTG44 1357 228293954 ddbjhtg44.seq 299020676 HTG45 1342 227975511 ddbjhtg45.seq 299196896 HTG46 1433 228935479 ddbjhtg46.seq 299077906 HTG47 1494 231571492 ddbjhtg47.seq 302291824 HTG48 1240 229978689 ddbjhtg48.seq 299150021 HTG49 1510 230801484 ddbjhtg49.seq 299116207 HTG50 1420 232476631 ddbjhtg50.seq 299211915 HTG51 1250 231538210 ddbjhtg51.seq 299060918 HTG52 919 159737897 ddbjhtg52.seq 207491581 human1 11349 194474660 ddbjhum1.seq 299003723 human2 1579 212138987 ddbjhum2.seq 299200527 human3 1572 216652194 ddbjhum3.seq 299011779 human4 1349 206342754 ddbjhum4.seq 299201353 human5 1455 214002780 ddbjhum5.seq 299096255 human6 1455 209437347 ddbjhum6.seq 299238679 human7 1535 203144687 ddbjhum7.seq 299172354 human8 1630 212304001 ddbjhum8.seq 299072684 human9 1493 207771724 ddbjhum9.seq 299166503 human10 1793 209379555 ddbjhum10.seq 299113101 human11 1959 212716058 ddbjhum11.seq 299004329 human12 38769 161437714 ddbjhum12.seq 299147738 human13 67037 123417655 ddbjhum13.seq 299137069 human14 3431 209238298 ddbjhum14.seq 299054982 human15 3062 212583347 ddbjhum15.seq 299037642 human16 2302 217436194 ddbjhum16.seq 299204932 human17 2465 218463947 ddbjhum17.seq 299103384 human18 4889 219930621 ddbjhum18.seq 299083908 human19 30671 165099126 ddbjhum19.seq 299001743 human20 75322 110617906 ddbjhum20.seq 299006797 human21 5125 36378558 ddbjhum21.seq 56021685 invertebrates1 10168 211356153 ddbjinv1.seq 299114063 invertebrates2 11251 176901192 ddbjinv2.seq 299000840 invertebrates3 84987 99948311 ddbjinv3.seq 299114243 invertebrates4 56535 113694747 ddbjinv4.seq 299017252 invertebrates5 4406 41140228 ddbjinv5.seq 79447199 mammals 49296 59873915 ddbjmam.seq 170799706 patens1 264652 97303932 ddbjpat1.seq 299000673 patens2 175163 103556787 ddbjpat2.seq 299000749 patens3 134249 136231385 ddbjpat3.seq 299000147 patens4 167968 111237294 ddbjpat4.seq 299037772 patens5 174868 73011631 ddbjpat5.seq 299000451 patens6 130616 74089678 ddbjpat6.seq 299000192 patens7 76321 21366325 ddbjpat7.seq 80921302 phages 2333 8615293 ddbjphg.seq 22115471 plants1 20378 172637276 ddbjpln1.seq 299102293 plants2 82755 105644197 ddbjpln2.seq 299001831 plants3 84552 89396219 ddbjpln3.seq 299107323 plants4 8374 195092741 ddbjpln4.seq 299011216 plants5 64369 97010791 ddbjpln5.seq 299039001 plants6 51969 93805667 ddbjpln6.seq 242229759 primates 19063 55898933 ddbjpri.seq 110191643 rodents1 7168 216594668 ddbjrod1.seq 299116280 rodents2 2557 231117821 ddbjrod2.seq 299000836 rodents3 30848 180648168 ddbjrod3.seq 299045541 rodents4 1448 231416860 ddbjrod4.seq 299190533 rodents5 9735 218163383 ddbjrod5.seq 299000301 rodents6 53719 96817319 ddbjrod6.seq 271904722 STS1 112104 50480307 ddbjsts1.seq 299001412 STS2 78078 34342903 ddbjsts2.seq 222763265 synthetic DNAs 9669 16245906 ddbjsyn.seq 42569426 TPA 312 320685385 ddbjtpa.seq 7570892 unannotated sequences 621 330976 ddbjuna.seq 1436901 viruses1 88233 75681047 ddbjvrl1.seq 299296975 viruses2 88611 79566055 ddbjvrl2.seq 299108219 viruses3 9908 11437462 ddbjvrl3.seq 36953684 vertebrates1 67261 122014641 ddbjvrt1.seq 299056185 vertebrates2 38179 135103701 ddbjvrt2.seq 253541965 Accession number index file 0 0 ddbjacc.idx 980216216 Gene name index file 0 0 ddbjgen.idx 47934997 Journal citation index file 0 0 ddbjjou.idx 1136619488 Keyword phrase index file 0 0 ddbjkey.idx 918161274 ------------------------------------------------------- EST: expressed sequence tag CON: Contig sequences GSS: genome survey sequence HTC: high throughput cDNA HTG: high throughput genome sequence STS: sequence tagged site TPA: third party annotation