DNA Data Bank of Japan DNA Database Release 55, Sep. 2003, including 27,753,140 entries, 34,280,225,489 bases This database may be copied and redistributed without permission on the condition that all the statements in this release note are reproduced in each copy. The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank, and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of August 28, 2003. This unified database was made possible thanks to the international collaboration among the three data banks. All the entries have accordingly been annotated using the feature keys common to them. All the entries designated by the accession numbers with the prefixes "C", "D", "E", "AB", "AG", "AK", "AP", "AT", "AU", "AV", "BA", "BB", "BD", "BJ", "BP", "BW" and "BY" have been collected and processed by DDBJ, and the rest have been prepared by GenBank and EMBL/EBI. There have been a number of genome projects going on worldwide. Among them human genome projects have probably been most productive and yielded a large number of ordinary sequences, huge amounts of ESTs and quantities of genome sequences. Thus, we have the human(HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. The HUM division in this release was recorded in 21 files each of which had 300 MB storage capacity. Incidentally, the BCT, HTC, INV, PLN, ROD, STS, VRL and VRT divisions were recorded in 6, 3, 5, 8, 8, 3, 3, 3 files, respectively. Note that the EST division also contains human sequences. The present release does not have the ORG division. Thus, if you are interested in human mitochondrial sequences, for example, you are now advised to refer to the HUM division. This release also includes a division (PAT) for patent data. The patent data are those which the Japanese Patent Office (JPO), United States Patent and Trademark Office (USPTO), and the European Patent Office (EPO) collected and processed. The accession numbers of the patent data collected by the Japanese Patent Office start with the prefix "E" and "BD", those collected and supplied by USPTO and GenBank respectively start with "I" and "AR", and those collected and supplied by EPO and EMBL/EBI respectively start with "A" and "AX". The entries with the prefixes "I", "AR", "A", "AX", "E" and "BD" were allocated to eight files (ddbjpat1.seq _ ddbjpat8.seq) in the DDBJ format. Note also that unauthorized use of the patent data may cause legal issues for which we take no responsibility. In the present release, the SOURCE in the flat file was revisited and revised if necessary in accordance with the unified taxonomy database common to the three data banks. The number of ESTs has been increasing at an enormous rate and is expected to be growing even more rapidly in the future. Therefore, EST data were stored in 199 files each of which had the same storage capacity as the file of the HUM division. The present release includes the GSS division. GSS stands for the Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. This division was recorded in 64 files similarly to the HUM division. This release also includes the High Throughput Genomic Sequence (HTGS), which comes mainly from genome project teams which deal with a clone as a sequencing unit. HTGS in this release were recorded in 52 files similarly to the HUM division. The index files are not presented in this release except for ddbjacc.idx, ddbjgen.idx, ddbjjou.idx, and ddbjkey.idx. Instead, we have included a program by which to make the index files not presented in this release. For the use of the program, see the files, seq2indexes.doc, seq2indexes.c, and seq2indexes.h in this release. The present release contains amino acid sequences that were translated from the corresponding nucleotide sequences in our database. In the translation we paid much attention to the fact that some species or organella have a codon different from the universal one, and used the proper codon table. If you find an incorrect codon in a translated sequence, please let us know. The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence (see Table 1). It is expressed like AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. We terminated the RNA division. The RNA data were redistributed according to the category of the organism. Therefore, you will find a human RNA sequence, for example, in the HUM division. The present release includes a division, CON. The CON division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. The current number of the entries of this division is 11,415. The present release also includes, HTC (High Throughput cDNA). This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. From release 51, TPA (Third Party Annotation) data were available. From release 54, '/sequenced_mol' qualifier was changed to '/mol_type' qualifier. We accordingly completed retrofitting the pertinent entries. This change was made on the agreement at the INSD international collaborative meeting in 2002. /mol_type qualifier Definition: in vivo molecule type Value format: molecule type where molecule type is limited to followings; "genomic DNA", "genomic RNA", "mRNA" (incl. EST), "tRNA", "rRNA", "snoRNA", "snRNA", "scRNA", "pre-mRNA", "other RNA" (incl. synthetic), "other DNA" (incl. synthetic), "unassigned DNA" (incl. unknown), "unassigned RNA" (incl. unknown) This release is published by the following DDBJ staff. T. Gojobori, Y. Tateno, K. Nishikawa, H. Sugawara, N. Saitou, S. Miyazaki, K. Ikeo, Y. Suzuki, S. Fukuchi, A. Kinjo, H. Aono, M. Ejima, N. Endo, Y. Fujisawa, D. Fukuda, M. Gojobori, H. Hashimoto, A. Hashizume, T. Hirai, N. Hoshi, H. Ichikawa, K. Ichikawa, T. Iizuka, N. Ishizaka, T. Kato, T. Kawamoto, J. Kohira, Ta. Koike, To. Koike, T. Konno, T. Kosuge, A. Kusakabe, K. Mamiya, N. Maruyama, J. Mashima, M. Matsuo, K. Mimura, S. Misu, S. Miyazawa, N. Murakata, S. Nagira, M. Nagura, N. Nishinomiya, T. Okido, K. Sakai, Y. Shigemoto, F. Sugiyama, M. Suzuki, T. Takaki, H. Tsutsui, M. Tsuboi, K. Watanabe, M. Yamaguchi, Y. Yamamoto, E. Yokoyama Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Mishima 411-8540, Japan Phone: +81 55 981 6853 FAX: +81 55 981 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp/ (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp/ (for DDBJ sequence data submission system) Acknowledgement: We are grateful to NCBI and EMBL/EBI for a firm friendship and an excellent collaboration with us. We also thank the Japanese Patent Office for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ Database Release History Release Date Entries Bases Comments 55 09/03 27,753,140 34,280,225,489 54 06/03 25,149,821 32,162,041,177 53 02/03 23,250,813 29,711,299,332 52 12/02 20,354,812 26,931,456,316 51 09/02 18,401,358 22,782,404,136 TPA started 50 06/02 17,260,693 20,158,357,982 49 04/02 16,503,157 18,579,627,226 48 01/02 15,016,100 16,197,713,855 47 10/01 13,266,610 14,145,671,645 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------------------------------------------------------------ This release covers 20 categories of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct.*** Category for bacteria ddbjest.*** Category for EST (expressed sequence tag) ddbjcon.*** Category for CON (Contig sequences) ddbjhtc.*** Category for HTC (high throughput cDNA) ddbjhtg.*** Category for HTG (high throughput genomic sequence) ddbjhum.*** Category for human ddbjgss.*** Category for GSS (Genome Survey Sequence) ddbjinv.*** Category for invertebrates ddbjmam.*** Category for mammals other than primates and rodents ddbjpat.*** Category for patents ddbjphg.*** Category for phages ddbjpln.*** Category for plants ddbjpri.*** Category for primates other than human ddbjrod.*** Category for rodents ddbjsts.*** Category for STS (sequence tagged site) ddbjsyn.*** Category for synthetic DNAs ddbjtpa.*** Category for TPA (Third Party Annotation) ddbjuna.*** Category for unannotated sequences ddbjvrl.*** Category for viruses ddbjvrt.*** Category for vertebrates other than mammals ------------------------------------------------------------------------------ Each category then has the following nine files. Note that all the files except for ddbj***.seq are created by the user by use of seq2indexes as mentioned in the release note. ------------------------------------------------------------------------------ ddbj***.seq List of an entry in DDBJ format, see Table 1. ddbj***.acc List of the accession numbers, see Table 2 . ddbj***.aut List of the authors, see Table 3. ddbj***.dir List of the short directory in DDBJ style, see Table 4. ddbj***.idx List of indices, see Table 5. ddbj***.jou List of the journals, see Table 6. ddbj***.key List of the key words, see Table 7. ddbj***.org List of the species names, see Table 8. ddbj***.sdr List of the short directory in DDBJ style, see Table 9. ------------------------------------------------------------------------------ The format of LOCUS line in the flat file was changed as shown below to adjust to the GenBank format from release 51. ------------------------------------------------------------------------------ Old (-rel. 50): LOCUS AB000001 660 bp DNA PLN 01-FEB-2001 Present (rel. 51-): LOCUS AB000001 660 bp DNA linear PLN 01-FEB-2001 New format specification: --------- -------- Positions Contents --------- -------- 01-05 'LOCUS' 06-12 spaces 13-28 Locus name 29-29 space 30-40 Length of sequence, right-justified 41-41 space 42-43 bp 44-44 space 45-47 spaces, ss- (single-stranded), ds- (double-stranded), or ms- (mixed-stranded) 48-53 DNA, RNA, tRNA (transfer RNA), rRNA (ribosomal RNA), mRNA (messenger RNA), uRNA (small nuclear RNA), scRNA, snRNA, snoRNA. Left justified. 54-55 space 56-63 'linear' followed by two spaces, or 'circular' 64-64 space 65-67 The division code 68-68 space 69-79 Date, in the form dd-MMM-yyyy (e.g., 15-MAR-1991) ------------------------------------------------------------------------------ Table 1. Part of the contents in the file 'ddbjbct.seq'. This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA linear BCT 14-APR-2000 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, Truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli (strain:W3110) cDNA to mRNA. ORGANISM Escherichia coli Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Miki Jishage, National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail:mjishage@lab.nig.ac.jp, Tel:0559-81-6742, Fax:0559-81-6746) REFERENCE 2 (bases 1 to 993) AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol. Gen. Genet. 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /organism="Escherichia coli" /sequenced_mol="cDNA to mRNA" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /transl_table=11 /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK" variation 75 /citation=[3] /replace="t" variation 97 /citation=[3] /replace="t" variation 99 /citation=[3] /replace="t" variation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t 0 others ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ Table 2. Part of the contents in the file 'ddbjbct.acc'. The first column refers to the secondary accession number, second column to the locus name, and third to the primary accession number. The primary number may be the same as the secondary number. They are arranged in the ascending order of the secondary accession numbers. ------------------------------------------------------------------------------ D00001 -> ECOPBPAA X04516 D00002 -> ECOPYRH X04469 D00006 -> PNS981TET D00006 D00020 -> COLE2LYS D00020 D00021 -> COLE31YS D00021 D00038 -> BRLAM330 D00038 D00066 -> BAC139AC D00066 D00067 -> ECONANA M20207 D00069 -> ECOUVRD2 D00069 D00087 -> BACXYNAA D00087 ------------------------------------------------------------------------------ Table 3. Part of the contents in the file 'ddbjbct.aut'. For each author name given on the left to the arrow, the corresponding locus name and primary accession number are respectively listed on the right. They are arranged in the alphabetical order of the author names. ------------------------------------------------------------------------------ Aan,F. -> STYCRR X05210 Aan,F. -> STYENZI M76176 Aaronson,W. -> ECOKPSD M64977 Aaronson,W. -> ECONEUA J05023 Abad-Lapuebla,M.A. -> VIBTDHI D90238 Abdel-Mawgood,A.L. -> CYAPSBHA X16394 Abdel-Meguid,S.S. -> TRNGDRECM J01843 Abdelal,A. -> STYCARA M36540 Abdelal,A. -> STYCARAB X13200 Abdelal,A.H. -> PSENOSA M60717 ------------------------------------------------------------------------------ Table 4. Part of the short directory in DDBJ style in the file 'ddbjbct.dir'. For each locus name given in the first column, the corresponding primary accession number, molecular type, number of nucleotide pairs, and description for the locus are respectively listed. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ ABCAARAA M34830 ds-DNA 1624 A.aceti acetic acid resistance protein (aarA) gene, complete cds. ABCADHCC D00635 ds-DNA 4230 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. ABCALDH D00521 ds-DNA 2683 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. ABCBCSAA M37202 ds-DNA 9540 A.xylinum bcs B, bcs C and bcs D genes, complete cds and bcs A gene, partial cds. ABCCELA M76548 ds-DNA 1165 Acetobacter xylinum UDP pyrophosphorylase (celA) gene, complete cds. ABCCELSYN X54676 ds-DNA 5363 A. xylinum gene for cellulose biosynthesis ABCIS1380 D10043 ds-DNA 1665 A.pasteurianus insertion sequence IS1380. ACAADH1 D90004 ds-DNA 2467 Acetobacter aceti(K6033) alcohol dehydrogenase subunit gene(adh1). ACCAAC2 M62833 ds-DNA 1123 Acinetobacter baumannii aminoglycoside acetyltr ansferase (aac2) gene, complete cds. ACCACEAA M62822 ds-DNA 1874 A.baumannii chloramphenicol acetyltransferase (cat) gene, complete cds. ------------------------------------------------------------------------------ Table 5. Part of the contents in the file 'ddbjbct.idx'. The first column refers to the locus name, second column to the starting site of the locus in byte, and third to its ending site in byte. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ %***************************** #ABCAARAA 0 3211 #ABCADHCC 3212 10608 #ABCALDH 10609 15864 #ABCBCSAA 15865 29583 #ABCCELA 29584 32289 #ABCCELSYN 32290 40960 #ABCIS1380 40961 44711 #ACAADH1 44712 49357 #ACCAAC2 49358 52395 ------------------------------------------------------------------------------ Table 6. Part of the contents in the file 'ddbjbct.jou'. This gives information on the journal in which sequence data were published. ------------------------------------------------------------------------------ (in) Chaloupka,J. and Krumphanzl,V. (Eds.); Extracellular Enzymes of Microorganisms: 129-137, Plenum Press, New York (1987) -> BACAMYABS M57457 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16S M55011 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SA M55006 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SB M55008 (in) Hoch,J.A. and Setlow,P. (Eds.); Molecular Biology of Microbial Differentiation: 85-94, American Society for Microbiology, Washington, DC (1985) -> BACSPOII M57606 (in) Holmgren,A. (Ed.); Thioredoxin and Glutaredoxin Systems: Structure and Function: 11-19, Unknown name, Unknown city (1986) -> ECOTRXA1 M54881 (in) Kjeldgaard,N.C. and Maaloe,O. (Eds.); Control of ribosome synthesis: 138-143, Academic Press, New York (1976) -> ECOLAC J01636 (in) Losick,R. and Chamberlin,M. (Eds.); RNA polymerase: 455-472, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1976) -> ECOTGY1 K01197 (in) Sikes,C.S. and Wheeler,A.P. (Eds.); Surface reactive peptides and polymers. Discovery and commercialization.: 186-200, American Chemical Society, Washington, D.C. (1991) -> ECOTGP J01714 (in) Sund,H. and Blauer,G. (Eds.); Protein-Ligand Interactions: 193-207, Walter de Gruyter, New York (1975) -> ECOLAC J01636 (in) Wu,R. and Grossman,L. (Eds.); Methods in Enzymology, Recombinant DNA, part E: In press, Academic Press, New York, N.Y. (1986) -> PLMCG M11320 Acta Microbiol. Pol. 35, 175-190 (1986) -> ECOTGG1 M54893 Actinomycetologica 5, 14-17 (1991) -> STMARGG D00799 Adv. Biophys. 21, 115-133 (1986) -> R10REP M26840 Adv. Biophys. 21, 175-192 (1986) -> ECONUSAA M26839 Adv. Enzyme Regul. 21, 225-237 (1983) -> ECOPURFA M26893 Adv. Exp. Med. Biol. 195, 239-246 (1986) -> ECOAPT M14040 Agric. Biol. Chem. 50, 2155-2158 (1986) -> ECONANA M20207 Agric. Biol. Chem. 50, 2771-2778 (1986) -> BRLAM330 D00038 Agric. Biol. Chem. 51, 2019-2022 (1987) -> BACCGT D00129 Agric. Biol. Chem. 51, 2641-2648 (1987) -> STRSAGP D00219 Agric. Biol. Chem. 51, 2807-2809 (1987) -> BACPGECR M35503 Agric. Biol. Chem. 51, 3133-3135 (1987) -> BACXYLAP D00312 Agric. Biol. Chem. 51, 455-463 (1987) -> BACHDCRY D00117 Agric. Biol. Chem. 51, 953-955 (1987) -> BACXYNAA D00087 Agric. Biol. Chem. 52, 1565-1573 (1988) -> BACIP135 D00348 Agric. Biol. Chem. 52, 1785-1789 (1988) -> BACTMR D00343 Agric. Biol. Chem. 52, 2243-2246 (1988) -> PSEGI D00342 Agric. Biol. Chem. 52, 399-406 (1988) -> BACAMYEB M35517 Agric. Biol. Chem. 52, 479-487 (1988) -> ECAPALI D00217 ------------------------------------------------------------------------------ Table 7. Part of the contents in the file 'ddbjbct.key'. For the locus and accession number respectively given on the right to the arrow, the corresponding key words are listed on the left. ------------------------------------------------------------------------------ A.aceti acetic acid resistance protein (aarA) gene, complete cds. -> ABCAARAA M34830 acetic acid resistance protein. -> ABCAARAA M34830 Cloning of genes responsible for acetic acid resistance in acetobacter aceti -> ABCAARAA M34830 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. -> ABCADHCC D00635 alcohol dehydrogenase; cytochrome c. -> ABCADHCC D00635 Cloning and sequencing of the gene cluster encoding two subunits of membrane- bound alcohol dehydrogenase from Acetobacter polyoxogenes -> ABCADHCC D00635 These data kindly submitted in computer readable form by: Toshimi Tamaki Nakano Central Biochemical Institute 2-6 Nakamura-cho Handa-shi, Aichi-ken 475 Japan Phone: 0569-21-3331 Fax: 0569-23-8486 -> ABCADHCC D00635 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. -> ABCALDH D00521 aldehyde dehydrogenase gene; ethanol oxidation; membrane-bound enzyme. -> ABCALDH D00521 Nucleotide sequence of the membrane-bound aldehyde dehydrogenase gene from Acetobacter polyoxogenes -> ABCALDH D00521 ------------------------------------------------------------------------------ Table 8. Part of the contents in the file 'ddbjbct.org'. For the locus and accession number respectively given on the right to the arrow, the corresponding taxonomic names are listed on the left. They are arranged in the alphabetical order of the species names. ------------------------------------------------------------------------------ A. nidulans 6301 DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRUBPS X00019 A. nidulans DNA, clone pAN4. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGGX X00343 A. nidulans DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGG X00512 A. polyoxogenes genomic DNA. Acetobacter polyoxogenes Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. - > ABCADHCC D00635 A. quadruplicatum (strain PR-6) DNA, clone pAQPR1. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUPCAB K02660 A. quadruplicatum (strain PR6) DNA. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUCPCAB K02659 A. vinelandii DNA. Azotobacter vinelandii Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> AVINIFUSV M17349 A.aceti (strain 10-8) DNA, clone pAR1611. Acetobacter aceti Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> ABCAARAA M34830 A.actinomycetemcomitans (strain JP2) DNA, clone lambda-OP8. Actinobacillus actinomycetemcomitans Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Pasteurellaceae. -> ACNLKTXN M27399 A.anitratum DNA, clone pLJD1. Acinetobacter anitratum Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Neisseriaceae. -> ACCCITSYN M33037 ------------------------------------------------------------------------------ Table 9. Part of the short directory file in DDBJ style in the file 'ddbjbct.sdr'. The short directory file contains brief descriptions of all of the sequence entries contained in the DDBJ style. ------------------------------------------------------------------------------ ABCAARAA A.aceti acetic acid resistance protein (aarA) gene, complete 1624bp ABCADHCC A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and 4230bp ABCALDH A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, 2683bp ABCBCSABCD A.xylinum bcs A, B, C and D genes, complete cds's. 9540bp ABCCELA Acetobacter xylinum UDP pyrophosphorylase (celA) gene, 1165bp ABCCELSYN A. xylinum gene for cellulose biosynthesis 5363bp ABCIS1380 A.pasteurianus insertion sequence IS1380. 1665bp ACAADH1 Acetobacter aceti(K6033) alcohol dehydrogenase subunit 2467bp ACCAAC2 Acinetobacter baumannii aminoglycoside acetyltransferase 1123bp ACCACEAA A.baumannii chloramphenicol acetyltransferase (cat) gene, 1874bp ACCAPHA6 Acinetobacter baumannii aphA-6 gene. 1170bp ACCBENABCA A.calcoaceticus BenA, BenB, BenC, BenD, and BenE proteins 15922bp ACCCAT Acinetobacter calcoaceticus cat operon. 15922bp ACCCATAM A.calcoaceticus catA and catM genes, encoding catechol 1, 5537bp ACCCHMO Acinetobacter sp. cyclohexanone monooxygenase gene, complete 2128bp ACCCITSYN A.anitratum citrate synthase gene, complete cds. 1895bp ------------------------------------------------------------------------------ In addition to the 9 tables the four following index files are included in this release. These files were prepared irrespective of the 10 categories of taxonomic divisions. Accession number index file Keyword phrase index file Journal citation index file Gene name index file A brief description is given for each file in the following. Table 10. Part of the accession number index file in the 'ddbjacc.idx'. The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00100 PSEASPAA BCT D00100 D00101 RABNP450R MAM D00101 D00102 HUMLTX HUM D00102 D00103 AFARRN5SA BCT D00103 AFRRN5SA BCT X05517 D00104 AFARRN5SB BCT D00104 AFRRN5SB BCT X05518 D00105 AFARRN5S BCT D00105 ASRRN5S BCT X05524 D00106 ACH5SRR BCT D00106 AXRRN5S BCT X05522 AXRRN5SA BCT X05523 D00107 ACH5SRRX BCT D00107 ACRRN5S BCT X05521 ------------------------------------------------------------------------------ Table 11. Part of the keyword phrase index file in the 'ddbjkey.idx'. Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ A CHANNEL DROCHA INV M17155 A COMPONENT SQLCVEA VRL M38183 A LOCUS GORGOGOA3 PRI X54375 GORGOGOA4 PRI X54376 A LOCUS ALLELE GORA0101 PRI X60258 GORA0201 PRI X60259 GORA0401 PRI X60257 GORA0501 PRI X60256 A MULTI-GENE FAMILY RICGLUTE PLN D00584 A PROTEIN MS2AAR PHG M25187 ST1APCS PHG M25396 A SEQUENCE HS5TOA30 VRL D00148 HS5TOA31 VRL D00147 ------------------------------------------------------------------------------ Table 12. Part of the journal citation index file in 'ddbjjou.idx'. The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ ACTA BIOCHIM. BIOPHYS. SIN. 23, 246-253 (1992) HUMPLASINS HUM M98056 ACTA BIOCHIM. BIOPHYS. SIN. 28, 233-239(1996) TKTII PLN X82230 ACTA BIOCHIM. POL. 24, 301-318 (1977) LUPTRFJ PLN K00345 LUPTRFN PLN K00346 ACTA BIOCHIM. POL. 26, 369-381(1979) HVTRNPHE PLN X02683 ACTA BIOCHIM. POL. 29, 143-149 (1982) EMEMTA PLN M32572 EMEMTB PLN M32573 EMEMTC PLN M32574 EMEMTD PLN M32575 EMEMTE PLN M32576 ACTA BIOCHIM. POL. 34, 21-27 (1987) LUPNOSP PLN M32571 ------------------------------------------------------------------------------ Table 13. Part of the gene name index file in 'ddbjgen.idx'. This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ AACC8 STMAACC8 BCT M55426 AACC9 MPUAACC9 BCT M55427 AACT HUMA1ACM PRI K01500 HUMA1ACMA PRI X00947 HUMA1ACMB PRI M18035 HUMAACT1 PRI M18906 HUMAACT2 PRI M22533 HUMAACTA PRI J05176 AAD INTINTORF BCT L06418 LMOMO229D BCT X17478 AAD A1 ENTAAC3VI BCT M88012 AAD9 ENEAAD9A BCT M69221 AADA LMOMO229A BCT X17479 S52249 BCT S52249 SYNAADA SYN M60473 TRNTAAB BCT M55547 TRNTN21CAS BCT M86913 ------------------------------------------------------------------------------ The files in this release are arranged in the following order with non-labeled format. Category number of number of file name file size entries bases Release note ddbjrel.txt 66730 bacteria1 24343 121916348 ddbjbct1.seq 299005287 bacteria2 6486 131378548 ddbjbct2.seq 299531607 bacteria3 68668 108011200 ddbjbct3.seq 299004170 bacteria4 28516 120084712 ddbjbct4.seq 299008680 bacteria5 34336 123667068 ddbjbct5.seq 299264696 bacteria6 40929 92976603 ddbjbct6.seq 241175736 CON 11415 0 ddbjcon.seq 17684060 EST1 90299 33964930 ddbjest1.seq 299001571 EST2 95003 38246891 ddbjest2.seq 299001545 EST3 95690 37150314 ddbjest3.seq 299000178 EST4 89463 28061640 ddbjest4.seq 299002294 EST5 94656 36561092 ddbjest5.seq 299002658 EST6 98843 39232034 ddbjest6.seq 299002100 EST7 98790 38158202 ddbjest7.seq 299001449 EST8 97646 37745708 ddbjest8.seq 299002291 EST9 98736 39001723 ddbjest9.seq 299000587 EST10 99001 38716785 ddbjest10.seq 299001241 EST11 98675 39802631 ddbjest11.seq 299000055 EST12 96803 42879989 ddbjest12.seq 299002694 EST13 106353 43631387 ddbjest13.seq 299000767 EST14 101703 40263115 ddbjest14.seq 299001425 EST15 97513 40980053 ddbjest15.seq 299001912 EST16 94608 42229200 ddbjest16.seq 299001097 EST17 98045 39747419 ddbjest17.seq 299001652 EST18 98192 42620753 ddbjest18.seq 299002063 EST19 95478 41252165 ddbjest19.seq 299001820 EST20 96016 39480928 ddbjest20.seq 299002836 EST21 113813 54180684 ddbjest21.seq 299001515 EST22 103414 50056377 ddbjest22.seq 299001348 EST23 91390 84958405 ddbjest23.seq 299002225 EST24 120244 66011842 ddbjest24.seq 299000892 EST25 122201 62976838 ddbjest25.seq 299000813 EST26 127930 60133974 ddbjest26.seq 299000351 EST27 123574 60496441 ddbjest27.seq 299000239 EST28 101093 33867870 ddbjest28.seq 299001717 EST29 92644 24576791 ddbjest29.seq 299001490 EST30 82248 24541196 ddbjest30.seq 299001894 EST31 60689 16606964 ddbjest31.seq 299003978 EST32 60626 16302658 ddbjest32.seq 299001524 EST33 105617 44049998 ddbjest33.seq 299002182 EST34 119401 55703820 ddbjest34.seq 299000911 EST35 100762 52125285 ddbjest35.seq 299001580 EST36 119826 60537430 ddbjest36.seq 299000606 EST37 118659 58605721 ddbjest37.seq 299000130 EST38 91992 38947683 ddbjest38.seq 299003648 EST39 92798 41256047 ddbjest39.seq 299000959 EST40 91238 38306433 ddbjest40.seq 299000371 EST41 106064 42791747 ddbjest41.seq 299000321 EST42 92046 36649041 ddbjest42.seq 299000648 EST43 83647 37034289 ddbjest43.seq 299001257 EST44 98337 45571133 ddbjest44.seq 299003700 EST45 97765 40379994 ddbjest45.seq 299002601 EST46 95862 33495650 ddbjest46.seq 299001985 EST47 101429 46161624 ddbjest47.seq 299000882 EST48 61033 16978140 ddbjest48.seq 299001213 EST49 60020 18405770 ddbjest49.seq 299002750 EST50 60592 18151223 ddbjest50.seq 299004278 EST51 60445 19290100 ddbjest51.seq 299004686 EST52 60384 18511201 ddbjest52.seq 299002137 EST53 60502 18364188 ddbjest53.seq 299003376 EST54 61399 18108888 ddbjest54.seq 299002617 EST55 61917 19499313 ddbjest55.seq 299003775 EST56 61424 19765933 ddbjest56.seq 299001751 EST57 61788 21418725 ddbjest57.seq 299003890 EST58 57164 33506654 ddbjest58.seq 299002257 EST59 54841 22653771 ddbjest59.seq 299001291 EST60 54447 24661882 ddbjest60.seq 299003563 EST61 54966 22740742 ddbjest61.seq 299005081 EST62 75883 33766623 ddbjest62.seq 299001031 EST63 94619 37565304 ddbjest63.seq 299002640 EST64 94786 39502998 ddbjest64.seq 299001764 EST65 98916 56542323 ddbjest65.seq 298999945 EST66 99523 54917811 ddbjest66.seq 299002314 EST67 100040 49453621 ddbjest67.seq 299000459 EST68 92706 52036532 ddbjest68.seq 299000721 EST69 93649 43947370 ddbjest69.seq 299000385 EST70 92190 49878715 ddbjest70.seq 299002108 EST71 99670 58868600 ddbjest71.seq 299000989 EST72 85254 43077007 ddbjest72.seq 299002256 EST73 94250 48827046 ddbjest73.seq 299001074 EST74 94486 58887104 ddbjest74.seq 299001125 EST75 90387 57749769 ddbjest75.seq 299003060 EST76 93866 46247879 ddbjest76.seq 299001422 EST77 89713 39006643 ddbjest77.seq 299003066 EST78 83273 46055797 ddbjest78.seq 299002005 EST79 90899 51724213 ddbjest79.seq 299001106 EST80 92976 48907913 ddbjest80.seq 299000914 EST81 96524 42959980 ddbjest81.seq 299000391 EST82 96809 34579468 ddbjest82.seq 299001368 EST83 94142 51482121 ddbjest83.seq 299001415 EST84 89637 50789220 ddbjest84.seq 299000314 EST85 101578 55385442 ddbjest85.seq 299000648 EST86 92824 62701183 ddbjest86.seq 299001690 EST87 87796 53074368 ddbjest87.seq 299002831 EST88 93410 59910120 ddbjest88.seq 299001310 EST89 92981 57554821 ddbjest89.seq 299002350 EST90 97868 59135366 ddbjest90.seq 299002599 EST91 94519 61817615 ddbjest91.seq 299001002 EST92 94189 60011988 ddbjest92.seq 299000162 EST93 100289 48213990 ddbjest93.seq 299000062 EST94 100698 46325018 ddbjest94.seq 299000446 EST95 100419 55823315 ddbjest95.seq 299001137 EST96 87991 50874233 ddbjest96.seq 299000815 EST97 89150 45368420 ddbjest97.seq 299000619 EST98 87548 49764589 ddbjest98.seq 299000688 EST99 88445 51774445 ddbjest99.seq 299002320 EST100 93330 55611479 ddbjest100.seq 299001281 EST101 88186 51886540 ddbjest101.seq 299003614 EST102 93350 55169164 ddbjest102.seq 299000571 EST103 89955 54386529 ddbjest103.seq 299002571 EST104 83916 47280073 ddbjest104.seq 299000246 EST105 126884 70243225 ddbjest105.seq 299000545 EST106 103150 55125903 ddbjest106.seq 299001397 EST107 129600 68810975 ddbjest107.seq 299002264 EST108 125910 68626864 ddbjest108.seq 299001880 EST109 109199 64112623 ddbjest109.seq 299002540 EST110 88289 46718196 ddbjest110.seq 299002262 EST111 81362 36625366 ddbjest111.seq 299003674 EST112 72308 34744895 ddbjest112.seq 299000680 EST113 80980 40871685 ddbjest113.seq 299000049 EST114 88498 46651125 ddbjest114.seq 299001750 EST115 88938 58018824 ddbjest115.seq 299002278 EST116 96417 67041047 ddbjest116.seq 299002295 EST117 82282 43446362 ddbjest117.seq 299003953 EST118 82605 43941080 ddbjest118.seq 299002891 EST119 85295 45858172 ddbjest119.seq 299000808 EST120 83041 57878295 ddbjest120.seq 299003869 EST121 104040 57615430 ddbjest121.seq 299002605 EST122 82873 54811617 ddbjest122.seq 299002048 EST123 89070 48366103 ddbjest123.seq 299001755 EST124 81502 51692579 ddbjest124.seq 299000943 EST125 90416 37651084 ddbjest125.seq 299000061 EST126 94408 54260838 ddbjest126.seq 299004850 EST127 104359 51892739 ddbjest127.seq 299000122 EST128 81452 41900635 ddbjest128.seq 298999921 EST129 89513 69691740 ddbjest129.seq 299000512 EST130 88837 48099126 ddbjest130.seq 299002054 EST131 88617 54654785 ddbjest131.seq 299003127 EST132 88388 63706274 ddbjest132.seq 299000809 EST133 91075 46592615 ddbjest133.seq 299000783 EST134 90679 72347832 ddbjest134.seq 299001893 EST135 84851 63870677 ddbjest135.seq 299000576 EST136 82219 59857408 ddbjest136.seq 299000103 EST137 83422 59948333 ddbjest137.seq 299001495 EST138 84420 62079614 ddbjest138.seq 299001266 EST139 82198 56181098 ddbjest139.seq 299003168 EST140 79936 46060834 ddbjest140.seq 299003022 EST141 81042 46751769 ddbjest141.seq 299004769 EST142 111367 63546843 ddbjest142.seq 299000367 EST143 96691 63152127 ddbjest143.seq 299002408 EST144 122066 74229597 ddbjest144.seq 298999968 EST145 136083 82221878 ddbjest145.seq 299000115 EST146 116311 69275121 ddbjest146.seq 299000007 EST147 81999 48117017 ddbjest147.seq 299002860 EST148 86139 88518461 ddbjest148.seq 299001892 EST149 97301 76083669 ddbjest149.seq 299001898 EST150 91584 42426362 ddbjest150.seq 299004628 EST151 58891 22083077 ddbjest151.seq 299002079 EST152 56737 20036839 ddbjest152.seq 299002598 EST153 57356 20829396 ddbjest153.seq 299000641 EST154 56549 21543976 ddbjest154.seq 299002050 EST155 56185 23459773 ddbjest155.seq 299002464 EST156 58061 19686011 ddbjest156.seq 299003765 EST157 58716 23118293 ddbjest157.seq 299000436 EST158 56876 24076812 ddbjest158.seq 299000849 EST159 55682 23072928 ddbjest159.seq 299004170 EST160 55794 23769603 ddbjest160.seq 299004984 EST161 56503 22856048 ddbjest161.seq 299001272 EST162 56417 22180694 ddbjest162.seq 299004075 EST163 53033 36199477 ddbjest163.seq 299004862 EST164 119018 48718374 ddbjest164.seq 299000856 EST165 92301 51779948 ddbjest165.seq 299000102 EST166 98379 56860822 ddbjest166.seq 299000549 EST167 86760 52452227 ddbjest167.seq 299000805 EST168 92757 46551124 ddbjest168.seq 299000287 EST169 125147 59709858 ddbjest169.seq 299001490 EST170 92274 50651171 ddbjest170.seq 299001322 EST171 84441 41101055 ddbjest171.seq 299000026 EST172 88118 54538855 ddbjest172.seq 299000169 EST173 93359 43325421 ddbjest173.seq 299001498 EST174 95225 56813625 ddbjest174.seq 299001386 EST175 81588 47590901 ddbjest175.seq 299001022 EST176 89673 44688534 ddbjest176.seq 299001480 EST177 107221 60668300 ddbjest177.seq 298999941 EST178 106060 70770515 ddbjest178.seq 299002503 EST179 121508 67276179 ddbjest179.seq 299000691 EST180 114890 55322240 ddbjest180.seq 299000391 EST181 93244 58203280 ddbjest181.seq 299000830 EST182 95832 53930119 ddbjest182.seq 299000412 EST183 91272 59065377 ddbjest183.seq 299001756 EST184 93769 57419289 ddbjest184.seq 299003437 EST185 79705 54408896 ddbjest185.seq 299001294 EST186 82104 44806666 ddbjest186.seq 299001167 EST187 102633 54740770 ddbjest187.seq 299002089 EST188 121273 68967241 ddbjest188.seq 299001249 EST189 152396 61684424 ddbjest189.seq 299000695 EST190 93257 47450805 ddbjest190.seq 299000809 EST191 86471 51754287 ddbjest191.seq 299002705 EST192 105231 56098926 ddbjest192.seq 299001593 EST193 117691 43688821 ddbjest193.seq 299000545 EST194 91068 32896124 ddbjest194.seq 299003459 EST195 95780 34903989 ddbjest195.seq 299000165 EST196 92921 33787002 ddbjest196.seq 299000046 EST197 100555 34618574 ddbjest197.seq 299002141 EST198 90596 37467788 ddbjest198.seq 299003283 EST199 36109 12292351 ddbjest199.seq 104593802 GSS1 104807 77606374 ddbjgss1.seq 299001596 GSS2 101492 71269668 ddbjgss2.seq 299001587 GSS3 113854 66566134 ddbjgss3.seq 299001765 GSS4 97819 73865009 ddbjgss4.seq 299003236 GSS5 82165 69098999 ddbjgss5.seq 299000352 GSS6 77140 72742751 ddbjgss6.seq 299004561 GSS7 93285 57216630 ddbjgss7.seq 299001238 GSS8 111340 44665492 ddbjgss8.seq 299000130 GSS9 117563 48989963 ddbjgss9.seq 299000381 GSS10 110920 53640088 ddbjgss10.seq 299002597 GSS11 102829 53245347 ddbjgss11.seq 299000363 GSS12 98463 50459469 ddbjgss12.seq 299001678 GSS13 102041 50890989 ddbjgss13.seq 299002347 GSS14 96427 48987236 ddbjgss14.seq 299000233 GSS15 92621 51336295 ddbjgss15.seq 299002050 GSS16 98102 50647086 ddbjgss16.seq 299003293 GSS17 88806 47265312 ddbjgss17.seq 299001243 GSS18 95427 47934437 ddbjgss18.seq 299002074 GSS19 93019 41452565 ddbjgss19.seq 299001101 GSS20 96217 57500481 ddbjgss20.seq 299002213 GSS21 90965 41730546 ddbjgss21.seq 299000092 GSS22 73842 37696350 ddbjgss22.seq 299001980 GSS23 74601 35641194 ddbjgss23.seq 299001204 GSS24 79727 39920639 ddbjgss24.seq 299000542 GSS25 80891 42804779 ddbjgss25.seq 299000165 GSS26 78285 47668300 ddbjgss26.seq 299001248 GSS27 90246 38887488 ddbjgss27.seq 299002890 GSS28 75206 34028364 ddbjgss28.seq 299000144 GSS29 91093 43459756 ddbjgss29.seq 299002296 GSS30 82717 44827350 ddbjgss30.seq 299001621 GSS31 96227 53645574 ddbjgss31.seq 299001096 GSS32 92608 54378991 ddbjgss32.seq 299001280 GSS33 102046 53836843 ddbjgss33.seq 299002103 GSS34 98393 52901171 ddbjgss34.seq 299000500 GSS35 120517 80076838 ddbjgss35.seq 299000141 GSS36 115426 64999594 ddbjgss36.seq 299001987 GSS37 114693 66622919 ddbjgss37.seq 299000719 GSS38 111092 45908183 ddbjgss38.seq 299001190 GSS39 104840 61468319 ddbjgss39.seq 299001455 GSS40 126256 82112733 ddbjgss40.seq 299001505 GSS41 105303 65165755 ddbjgss41.seq 299000312 GSS42 94969 64239717 ddbjgss42.seq 299000249 GSS43 93361 61485229 ddbjgss43.seq 299002110 GSS44 101316 53225066 ddbjgss44.seq 299001560 GSS45 107403 69018975 ddbjgss45.seq 299000830 GSS46 112801 90836204 ddbjgss46.seq 299001661 GSS47 112489 62199786 ddbjgss47.seq 299001477 GSS48 114732 76044460 ddbjgss48.seq 299001511 GSS49 100441 58710299 ddbjgss49.seq 299000430 GSS50 101691 61562879 ddbjgss50.seq 299000008 GSS51 117554 57174042 ddbjgss51.seq 299002242 GSS52 110737 64102587 ddbjgss52.seq 299001074 GSS53 98890 84974095 ddbjgss53.seq 299000562 GSS54 96169 97236104 ddbjgss54.seq 299000693 GSS55 117395 86505083 ddbjgss55.seq 299001620 GSS56 86504 56386717 ddbjgss56.seq 299003325 GSS57 92966 65471817 ddbjgss57.seq 299000345 GSS58 114621 85198098 ddbjgss58.seq 299000946 GSS59 106812 65040142 ddbjgss59.seq 299002624 GSS60 113061 73493792 ddbjgss60.seq 299000595 GSS61 115421 87311113 ddbjgss61.seq 299001008 GSS62 114866 90420678 ddbjgss62.seq 299000166 GSS63 112785 89234744 ddbjgss63.seq 299000799 GSS64 87385 66207998 ddbjgss64.seq 228917988 HTC1 38105 68533089 ddbjhtc1.seq 299004919 HTC2 51185 88069331 ddbjhtc2.seq 299001529 HTC3 58751 41574935 ddbjhtc3.seq 134574157 HTG1 1585 227675040 ddbjhtg1.seq 299152211 HTG2 3380 224566403 ddbjhtg2.seq 299176993 HTG3 3037 225997963 ddbjhtg3.seq 299013968 HTG4 1923 225978102 ddbjhtg4.seq 299069596 HTG5 1541 224625217 ddbjhtg5.seq 299097715 HTG6 1506 224829397 ddbjhtg6.seq 299020338 HTG7 1542 224597517 ddbjhtg7.seq 299164861 HTG8 1344 227921910 ddbjhtg8.seq 299106620 HTG9 1836 222796544 ddbjhtg9.seq 299031667 HTG10 1153 229652550 ddbjhtg10.seq 299133421 HTG11 898 230198326 ddbjhtg11.seq 299159431 HTG12 892 230129330 ddbjhtg12.seq 299097058 HTG13 952 230099685 ddbjhtg13.seq 299236605 HTG14 918 230147115 ddbjhtg14.seq 299180010 HTG15 1500 224708172 ddbjhtg15.seq 299008225 HTG16 1884 220390230 ddbjhtg16.seq 299225477 HTG17 1212 227590346 ddbjhtg17.seq 299281717 HTG18 1272 227525042 ddbjhtg18.seq 299324889 HTG19 936 229816647 ddbjhtg19.seq 299037020 HTG20 1144 228533288 ddbjhtg20.seq 299032704 HTG21 1088 229128851 ddbjhtg21.seq 299331823 HTG22 1027 229386313 ddbjhtg22.seq 299344828 HTG23 935 230068816 ddbjhtg23.seq 299238060 HTG24 1073 229139178 ddbjhtg24.seq 299068615 HTG25 1059 229297938 ddbjhtg25.seq 299053743 HTG26 1200 228118673 ddbjhtg26.seq 299010953 HTG27 1112 228708435 ddbjhtg27.seq 299136475 HTG28 1126 228943002 ddbjhtg28.seq 299210247 HTG29 1159 228388580 ddbjhtg29.seq 299221820 HTG30 1114 229386205 ddbjhtg30.seq 299009021 HTG31 1138 228706887 ddbjhtg31.seq 299054063 HTG32 1127 229295636 ddbjhtg32.seq 299087452 HTG33 1057 229595383 ddbjhtg33.seq 299151083 HTG34 1026 229503293 ddbjhtg34.seq 299217266 HTG35 1048 229452424 ddbjhtg35.seq 299222029 HTG36 1142 228943609 ddbjhtg36.seq 299266228 HTG37 1141 229566751 ddbjhtg37.seq 299120639 HTG38 1137 229003611 ddbjhtg38.seq 299082446 HTG39 1241 228545069 ddbjhtg39.seq 299024628 HTG40 1429 226700425 ddbjhtg40.seq 299096406 HTG41 1364 227851676 ddbjhtg41.seq 299012649 HTG42 1471 227984006 ddbjhtg42.seq 299307243 HTG43 1307 228964982 ddbjhtg43.seq 299016110 HTG44 1344 227730723 ddbjhtg44.seq 299139461 HTG45 1395 229020525 ddbjhtg45.seq 299152328 HTG46 1502 229542291 ddbjhtg46.seq 299123014 HTG47 1481 228836651 ddbjhtg47.seq 299124729 HTG48 1250 228184306 ddbjhtg48.seq 299101276 HTG49 1541 231394849 ddbjhtg49.seq 299129188 HTG50 1312 231807874 ddbjhtg50.seq 299073866 HTG51 1207 231495989 ddbjhtg51.seq 299133217 HTG52 976 172680975 ddbjhtg52.seq 223289343 human1 12233 192521274 ddbjhum1.seq 299226080 human2 1598 210683576 ddbjhum2.seq 299075854 human3 1574 217304237 ddbjhum3.seq 299162010 human4 1348 206252092 ddbjhum4.seq 299171011 human5 1446 213395732 ddbjhum5.seq 299163060 human6 1459 210241326 ddbjhum6.seq 299107788 human7 1541 202746819 ddbjhum7.seq 299225785 human8 1612 212614289 ddbjhum8.seq 299184410 human9 1509 207611626 ddbjhum9.seq 299175080 human10 1787 209130658 ddbjhum10.seq 299144677 human11 1949 213155956 ddbjhum11.seq 299178769 human12 35225 166319589 ddbjhum12.seq 299003826 human13 71191 114923401 ddbjhum13.seq 299042852 human14 3340 205050700 ddbjhum14.seq 299050668 human15 3061 212039576 ddbjhum15.seq 299014204 human16 2254 217298768 ddbjhum16.seq 299076479 human17 2571 217285688 ddbjhum17.seq 299106360 human18 5098 223187295 ddbjhum18.seq 299010185 human19 22026 177274282 ddbjhum19.seq 299004968 human20 57616 115688165 ddbjhum20.seq 299061409 human21 36508 64490167 ddbjhum21.seq 155011434 invertebrates1 10478 210926558 ddbjinv1.seq 299048935 invertebrates2 10419 177754672 ddbjinv2.seq 299007811 invertebrates3 88345 95654785 ddbjinv3.seq 299013427 invertebrates4 55463 114092381 ddbjinv4.seq 299056117 invertebrates5 13827 58179541 ddbjinv5.seq 123352803 mammals 51899 65874007 ddbjmam.seq 183751083 patens1 258500 91094701 ddbjpat1.seq 298999946 patens2 186739 105731429 ddbjpat2.seq 299003057 patens3 143486 122418814 ddbjpat3.seq 298999954 patens4 163043 108781226 ddbjpat4.seq 299010053 patens5 164973 105150526 ddbjpat5.seq 299000363 patens6 156840 65084686 ddbjpat6.seq 299002162 patens7 121621 70748808 ddbjpat7.seq 299000884 patens8 140799 53249518 ddbjpat8.seq 224502706 phages 2328 9686704 ddbjphg.seq 24740624 plants1 22275 169687167 ddbjpln1.seq 299100688 plants2 61535 135323009 ddbjpln2.seq 299003585 plants3 90239 91445879 ddbjpln3.seq 299000815 plants4 47915 56393152 ddbjpln4.seq 299002629 plants5 9221 186372308 ddbjpln5.seq 299206111 plants6 44026 134799067 ddbjpln6.seq 299000014 plants7 74269 101200345 ddbjpln7.seq 299000004 plants8 11831 28858925 ddbjpln8.seq 70022902 primates 21596 67383282 ddbjpri.seq 129449731 rodents1 7337 209465486 ddbjrod1.seq 299013716 rodents2 1247 229626673 ddbjrod2.seq 299167258 rodents3 11478 213976703 ddbjrod3.seq 299000899 rodents4 22265 195836723 ddbjrod4.seq 299057903 rodents5 1418 230965542 ddbjrod5.seq 299042721 rodents6 11115 216075935 ddbjrod6.seq 299002119 rodents7 52130 114336212 ddbjrod7.seq 299001326 rodents8 4637 5265006 ddbjrod8.seq 16600224 STS1 104692 58129170 ddbjsts1.seq 299002673 STS2 102069 42120353 ddbjsts2.seq 299000871 STS3 32241 14120653 ddbjsts3.seq 80316971 synthetic DNAs 10683 17640463 ddbjsyn.seq 46893339 TPA 459 321700631 ddbjtpa.seq 9711344 unannotated sequences 1084 389421 ddbjuna.seq 2406594 viruses1 88044 75593191 ddbjvrl1.seq 299000085 viruses2 88412 79039672 ddbjvrl2.seq 299002332 viruses3 21146 21312443 ddbjvrl3.seq 75664622 vertebrates1 69121 116338243 ddbjvrt1.seq 299140584 vertebrates2 26992 184229178 ddbjvrt2.seq 299031469 vertebrates3 19007 30863670 ddbjvrt3.seq 77331178 Accession number index file 0 0 ddbjacc.idx 1081765823 Gene name index file 0 0 ddbjgen.idx 51153995 Journal citation index file 0 0 ddbjjou.idx 1237269624 Keyword phrase index file 0 0 ddbjkey.idx 1012001430 ------------------------------------------------------- EST: expressed sequence tag CON: Contig sequences GSS: genome survey sequence HTC: high throughput cDNA HTG: high throughput genome sequence STS: sequence tagged site TPA: third party annotation