DNA Data Bank of Japan DNA Database Release 57, March 2004, including 32,693,678 entries, 38,008,449,840 bases This database may be copied and redistributed without permission on the condition that all the statements in this release note are reproduced in each copy. The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank, and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of February 25, 2004. This unified database was made possible thanks to the international collaboration among the three data banks. All the entries have accordingly been annotated using the feature keys common to them. All the entries designated by the accession numbers with the prefixes "C", "D", "E", "AB", "AG", "AK", "AP", "AT", "AU", "AV", "BA", "BB", "BD", "BJ", "BP", "BS", "BW" and "BY" have been collected and processed by DDBJ, and the rest have been prepared by GenBank and EMBL/EBI. There have been a number of genome projects going on worldwide. Among them human genome projects have probably been most productive and yielded a large number of ordinary sequences, huge amounts of ESTs and quantities of genome sequences. Thus, we have the human(HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. The HUM division in this release was recorded in 21 files each of which had 300 MB storage capacity. Incidentally, the BCT, HTC, INV, PLN, ROD, STS, VRL and VRT divisions were recorded in 7, 3, 6, 9, 10, 3, 3, 4 files, respectively. Note that the EST division also contains human sequences. The present release does not have the ORG division. Thus, if you are interested in human mitochondrial sequences, for example, you are now advised to refer to the HUM division. This release includes a division (PAT) for patent data. The patent data are those which the Japanese Patent Office (JPO), United States Patent and Trademark Office (USPTO), and the European Patent Office (EPO) collected and processed. The accession numbers of the patent data collected by the Japanese Patent Office start with the prefix "E" and "BD", those collected and supplied by USPTO and GenBank respectively start with "I" and "AR", and those collected and supplied by EPO and EMBL/EBI respectively start with "A" and "AX". The entries with the prefixes "I", "AR", "A", "AX", "E" and "BD" were allocated to ten files (ddbjpat1.seq _ ddbjpat10.seq) in the DDBJ format. Note also that unauthorized use of the patent data may cause legal issues for which we take no responsibility. In the present release, the SOURCE in the flat file was revisited and revised if necessary in accordance with the unified taxonomy database common to the three data banks. The number of ESTs has been increasing at an enormous rate and is expected to be growing even more rapidly in the future. Therefore, EST data were stored in 223 files each of which had the same storage capacity as the file of the HUM division. The present release includes the GSS division. GSS stands for the Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. This division was recorded in 80 files similarly to the HUM division. This release also includes the High Throughput Genomic Sequence (HTGS), which comes mainly from genome project teams which deal with a clone as a sequencing unit. HTGS in this release were recorded in 52 files similarly to the HUM division. The index files are not presented in this release except for ddbjacc.idx, ddbjgen.idx, ddbjjou.idx, and ddbjkey.idx. Instead, we have included a program by which to make the index files not presented in this release. For the use of the program, see the files, seq2indexes.doc, seq2indexes.c, and seq2indexes.h in this release. The present release contains amino acid sequences that were translated from the corresponding nucleotide sequences in our database. In the translation we paid much attention to the fact that some species or organella have a codon different from the universal one, and used the proper codon table. If you find an incorrect codon in a translated sequence, please let us know. The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence (see Table 1). It is expressed like AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. We terminated the RNA division. The RNA data have been redistributed according to the category of the organism. Therefore, you will find a human RNA sequence, for example, in the HUM division. The present release includes a division, CON. The CON division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. The current number of the entries of this division is 16190. The entries and bases in the CON division are not counted in the released numbers on the top of the release note. The present release also includes, HTC (High Throughput cDNA). This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. Since release 51, TPA (Third Party Annotation) data have been available. The entries and bases in TPA are not counted in the released numbers on the top of the release note. Since release 54, '/sequenced_mol' qualifier has been changed to '/mol_type' qualifier. We accordingly completed retrofitting the pertinent entries. This change was made on the agreement at the INSD international collaborative meeting in 2002. /mol_type qualifier Definition: in vivo molecule type Value format: molecule type where molecule type is limited to followings; "genomic DNA", "genomic RNA", "mRNA" (incl. EST), "tRNA", "rRNA", "snoRNA", "snRNA", "scRNA", "pre-mRNA", "other RNA" (incl. synthetic), "other DNA" (incl. synthetic), "unassigned DNA" (incl. unknown), "unassigned RNA" (incl. unknown) The BASE COUNT line of the DDBJ flat file format has been changed since DDBJ release 56, corresponding to the relaxation of the maximum sequence length restriction (350,000 bp/entry) in the entry that had been practised at DDBJ/EMBL/GenBank International Nucleotide Sequence Databases. In the BASE COUNT line of the DDBJ flat file format, 6 digits had been allocated for each number of a, c, g, t and other bases in the sequence. Hereafter, in the new flat file format, 9 digits are allocated for each number of a, c, g and t, while the numbers of other bases are removed. In accordance with the relaxation of sequence length limitation, GenBank had already dropped the BASE COUNT line from their flat file format from GenBank Release 138 (Oct. 2003). We DDBJ have decided to maintain the BASE COUNT line in our flat file format from the view that GC contents are still important information to characterize the sequence. Prior to publication of release 56 in December, 2003, the new DDBJ flat file format is adopted to daily data update from Dec. 3. Following is an example of the new BASE COUNT line. 1 6 11 16 21 26 31 36 41 46 51 56 61 66 71 |----|----|----|----|----|----|----|----|----|----|----|----|----|----| BASE COUNT 123456789 a 123456789 c 123456789 g 123456789 t This release is published by the following DDBJ staff. T. Gojobori, Y. Tateno, K. Nishikawa, H. Sugawara, N. Saitou, K. Okubo, S. Miyazaki,K. Ikeo, Y. Suzuki, S. Fukuchi, A. Kinjo, K. Itoh, S. Adachi, H. Aono, M. Ejima, N. Endo, Y. Fujisawa, D. Fukuda, M. Gojobori, A. Hashizume, T. Hirai, N. Hoshi, H. Ichikawa, K. Ichikawa, T. Iizuka, N. Ishizaka, T. Kato, T. Kawamoto, J. Kohira, Ta. Koike, To. Koike, T. Konno, T. Kosuge, A. Kusakabe, Y. Lin, K. Mamiya, N. Maruyama, J. Mashima, M. Matsuo, K. Mimura, S. Misu, S. Miyazawa, N. Murakata, S. Nagira, M. Nagura, N. Nishinomiya, T. Okido, K. Sakai, Y. Shigemoto, F. Sugiyama, M. Suzuki, T. Takaki, H. Tsutsui, M. Tsuboi, K. Watanabe, M. Yamaguchi, Y. Yamamoto, E. Yokoyama Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Mishima 411-8540, Japan Phone: +81 55 981 6853 FAX: +81 55 981 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp/ (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp/ (for DDBJ sequence data submission system) Acknowledgement: We are grateful to NCBI and EMBL/EBI for a firm friendship and an excellent collaboration with us. We also thank the Japanese Patent Office for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ Database Release History Release Date Entries Bases Comments 57 03/04 32,693,678 38,008,449,840 56 12/03 30,405,173 36,079,046,032 55 09/03 27,753,140 34,280,225,489 54 06/03 25,149,821 32,162,041,177 53 02/03 23,250,813 29,711,299,332 52 12/02 20,354,812 26,931,456,316 51 09/02 18,401,358 22,782,404,136 TPA started 50 06/02 17,260,693 20,158,357,982 49 04/02 16,503,157 18,579,627,226 48 01/02 15,016,100 16,197,713,855 47 10/01 13,266,610 14,145,671,645 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------------------------------------------------------------ This release covers 20 categories of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct.*** Category for bacteria ddbjest.*** Category for EST (expressed sequence tag) ddbjcon.*** Category for CON (Contig sequences) ddbjhtc.*** Category for HTC (high throughput cDNA) ddbjhtg.*** Category for HTG (high throughput genomic sequence) ddbjhum.*** Category for human ddbjgss.*** Category for GSS (Genome Survey Sequence) ddbjinv.*** Category for invertebrates ddbjmam.*** Category for mammals other than primates and rodents ddbjpat.*** Category for patents ddbjphg.*** Category for phages ddbjpln.*** Category for plants ddbjpri.*** Category for primates other than human ddbjrod.*** Category for rodents ddbjsts.*** Category for STS (sequence tagged site) ddbjsyn.*** Category for synthetic DNAs ddbjtpa.*** Category for TPA (Third Party Annotation) ddbjuna.*** Category for unannotated sequences ddbjvrl.*** Category for viruses ddbjvrt.*** Category for vertebrates other than mammals ------------------------------------------------------------------------------ Each category then has the following nine files. Note that all the files except for ddbj***.seq are created by the user by use of seq2indexes as mentioned in the release note. ------------------------------------------------------------------------------ ddbj***.seq List of an entry in DDBJ format, see Table 1. ddbj***.acc List of the accession numbers, see Table 2 . ddbj***.aut List of the authors, see Table 3. ddbj***.dir List of the short directory in DDBJ style, see Table 4. ddbj***.idx List of indices, see Table 5. ddbj***.jou List of the journals, see Table 6. ddbj***.key List of the key words, see Table 7. ddbj***.org List of the species names, see Table 8. ddbj***.sdr List of the short directory in DDBJ style, see Table 9. ------------------------------------------------------------------------------ The format of LOCUS line in the flat file was changed as shown below to adjust to the GenBank format from release 51. ------------------------------------------------------------------------------ Old (-rel. 50): LOCUS AB000001 660 bp DNA PLN 01-FEB-2001 Present (rel. 51-): LOCUS AB000001 660 bp DNA linear PLN 01-FEB-2001 New format specification: --------- -------- Positions Contents --------- -------- 01-05 'LOCUS' 06-12 spaces 13-28 Locus name 29-29 space 30-40 Length of sequence, right-justified 41-41 space 42-43 bp 44-44 space 45-47 spaces, ss- (single-stranded), ds- (double-stranded), or ms- (mixed-stranded) 48-53 DNA, RNA, tRNA (transfer RNA), rRNA (ribosomal RNA), mRNA (messenger RNA), uRNA (small nuclear RNA), scRNA, snRNA, snoRNA. Left justified. 54-55 space 56-63 'linear' followed by two spaces, or 'circular' 64-64 space 65-67 The division code 68-68 space 69-79 Date, in the form dd-MMM-yyyy (e.g., 15-MAR-1991) ------------------------------------------------------------------------------ Table 1. Part of the contents in the file 'ddbjbct.seq'. This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA linear BCT 14-APR-2000 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Miki Jishage, National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail:mjishage@lab.nig.ac.jp, Tel:0559-81-6742, Fax:0559-81-6746) REFERENCE 2 (bases 1 to 993) AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol. Gen. Genet. 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /mol_type="mRNA" /organism="Escherichia coli" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /transl_table=11 /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK" variation 75 /citation=[3] /replace="t" variation 97 /citation=[3] /replace="t" variation 99 /citation=[3] /replace="t" variation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ Table 2. Part of the contents in the file 'ddbjbct.acc'. The first column refers to the secondary accession number, second column to the locus name, and third to the primary accession number. The primary number may be the same as the secondary number. They are arranged in the ascending order of the secondary accession numbers. ------------------------------------------------------------------------------ D00001 -> ECOPBPAA X04516 D00002 -> ECOPYRH X04469 D00006 -> PNS981TET D00006 D00020 -> COLE2LYS D00020 D00021 -> COLE31YS D00021 D00038 -> BRLAM330 D00038 D00066 -> BAC139AC D00066 D00067 -> ECONANA M20207 D00069 -> ECOUVRD2 D00069 D00087 -> BACXYNAA D00087 ------------------------------------------------------------------------------ Table 3. Part of the contents in the file 'ddbjbct.aut'. For each author name given on the left to the arrow, the corresponding locus name and primary accession number are respectively listed on the right. They are arranged in the alphabetical order of the author names. ------------------------------------------------------------------------------ Aan,F. -> STYCRR X05210 Aan,F. -> STYENZI M76176 Aaronson,W. -> ECOKPSD M64977 Aaronson,W. -> ECONEUA J05023 Abad-Lapuebla,M.A. -> VIBTDHI D90238 Abdel-Mawgood,A.L. -> CYAPSBHA X16394 Abdel-Meguid,S.S. -> TRNGDRECM J01843 Abdelal,A. -> STYCARA M36540 Abdelal,A. -> STYCARAB X13200 Abdelal,A.H. -> PSENOSA M60717 ------------------------------------------------------------------------------ Table 4. Part of the short directory in DDBJ style in the file 'ddbjbct.dir'. For each locus name given in the first column, the corresponding primary accession number, molecular type, number of nucleotide pairs, and description for the locus are respectively listed. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ ABCAARAA M34830 ds-DNA 1624 A.aceti acetic acid resistance protein (aarA) gene, complete cds. ABCADHCC D00635 ds-DNA 4230 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. ABCALDH D00521 ds-DNA 2683 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. ABCBCSAA M37202 ds-DNA 9540 A.xylinum bcs B, bcs C and bcs D genes, complete cds and bcs A gene, partial cds. ABCCELA M76548 ds-DNA 1165 Acetobacter xylinum UDP pyrophosphorylase (celA) gene, complete cds. ABCCELSYN X54676 ds-DNA 5363 A. xylinum gene for cellulose biosynthesis ABCIS1380 D10043 ds-DNA 1665 A.pasteurianus insertion sequence IS1380. ACAADH1 D90004 ds-DNA 2467 Acetobacter aceti(K6033) alcohol dehydrogenase subunit gene(adh1). ACCAAC2 M62833 ds-DNA 1123 Acinetobacter baumannii aminoglycoside acetyltr ansferase (aac2) gene, complete cds. ACCACEAA M62822 ds-DNA 1874 A.baumannii chloramphenicol acetyltransferase (cat) gene, complete cds. ------------------------------------------------------------------------------ Table 5. Part of the contents in the file 'ddbjbct.idx'. The first column refers to the locus name, second column to the starting site of the locus in byte, and third to its ending site in byte. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ %***************************** #ABCAARAA 0 3211 #ABCADHCC 3212 10608 #ABCALDH 10609 15864 #ABCBCSAA 15865 29583 #ABCCELA 29584 32289 #ABCCELSYN 32290 40960 #ABCIS1380 40961 44711 #ACAADH1 44712 49357 #ACCAAC2 49358 52395 ------------------------------------------------------------------------------ Table 6. Part of the contents in the file 'ddbjbct.jou'. This gives information on the journal in which sequence data were published. ------------------------------------------------------------------------------ (in) Chaloupka,J. and Krumphanzl,V. (Eds.); Extracellular Enzymes of Microorganisms: 129-137, Plenum Press, New York (1987) -> BACAMYABS M57457 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16S M55011 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SA M55006 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SB M55008 (in) Hoch,J.A. and Setlow,P. (Eds.); Molecular Biology of Microbial Differentiation: 85-94, American Society for Microbiology, Washington, DC (1985) -> BACSPOII M57606 (in) Holmgren,A. (Ed.); Thioredoxin and Glutaredoxin Systems: Structure and Function: 11-19, Unknown name, Unknown city (1986) -> ECOTRXA1 M54881 (in) Kjeldgaard,N.C. and Maaloe,O. (Eds.); Control of ribosome synthesis: 138-143, Academic Press, New York (1976) -> ECOLAC J01636 (in) Losick,R. and Chamberlin,M. (Eds.); RNA polymerase: 455-472, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1976) -> ECOTGY1 K01197 (in) Sikes,C.S. and Wheeler,A.P. (Eds.); Surface reactive peptides and polymers. Discovery and commercialization.: 186-200, American Chemical Society, Washington, D.C. (1991) -> ECOTGP J01714 (in) Sund,H. and Blauer,G. (Eds.); Protein-Ligand Interactions: 193-207, Walter de Gruyter, New York (1975) -> ECOLAC J01636 (in) Wu,R. and Grossman,L. (Eds.); Methods in Enzymology, Recombinant DNA, part E: In press, Academic Press, New York, N.Y. (1986) -> PLMCG M11320 Acta Microbiol. Pol. 35, 175-190 (1986) -> ECOTGG1 M54893 Actinomycetologica 5, 14-17 (1991) -> STMARGG D00799 Adv. Biophys. 21, 115-133 (1986) -> R10REP M26840 Adv. Biophys. 21, 175-192 (1986) -> ECONUSAA M26839 Adv. Enzyme Regul. 21, 225-237 (1983) -> ECOPURFA M26893 Adv. Exp. Med. Biol. 195, 239-246 (1986) -> ECOAPT M14040 Agric. Biol. Chem. 50, 2155-2158 (1986) -> ECONANA M20207 Agric. Biol. Chem. 50, 2771-2778 (1986) -> BRLAM330 D00038 Agric. Biol. Chem. 51, 2019-2022 (1987) -> BACCGT D00129 Agric. Biol. Chem. 51, 2641-2648 (1987) -> STRSAGP D00219 Agric. Biol. Chem. 51, 2807-2809 (1987) -> BACPGECR M35503 Agric. Biol. Chem. 51, 3133-3135 (1987) -> BACXYLAP D00312 Agric. Biol. Chem. 51, 455-463 (1987) -> BACHDCRY D00117 Agric. Biol. Chem. 51, 953-955 (1987) -> BACXYNAA D00087 Agric. Biol. Chem. 52, 1565-1573 (1988) -> BACIP135 D00348 Agric. Biol. Chem. 52, 1785-1789 (1988) -> BACTMR D00343 Agric. Biol. Chem. 52, 2243-2246 (1988) -> PSEGI D00342 Agric. Biol. Chem. 52, 399-406 (1988) -> BACAMYEB M35517 Agric. Biol. Chem. 52, 479-487 (1988) -> ECAPALI D00217 ------------------------------------------------------------------------------ Table 7. Part of the contents in the file 'ddbjbct.key'. For the locus and accession number respectively given on the right to the arrow, the corresponding key words are listed on the left. ------------------------------------------------------------------------------ A.aceti acetic acid resistance protein (aarA) gene, complete cds. -> ABCAARAA M34830 acetic acid resistance protein. -> ABCAARAA M34830 Cloning of genes responsible for acetic acid resistance in acetobacter aceti -> ABCAARAA M34830 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. -> ABCADHCC D00635 alcohol dehydrogenase; cytochrome c. -> ABCADHCC D00635 Cloning and sequencing of the gene cluster encoding two subunits of membrane- bound alcohol dehydrogenase from Acetobacter polyoxogenes -> ABCADHCC D00635 These data kindly submitted in computer readable form by: Toshimi Tamaki Nakano Central Biochemical Institute 2-6 Nakamura-cho Handa-shi, Aichi-ken 475 Japan Phone: 0569-21-3331 Fax: 0569-23-8486 -> ABCADHCC D00635 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. -> ABCALDH D00521 aldehyde dehydrogenase gene; ethanol oxidation; membrane-bound enzyme. -> ABCALDH D00521 Nucleotide sequence of the membrane-bound aldehyde dehydrogenase gene from Acetobacter polyoxogenes -> ABCALDH D00521 ------------------------------------------------------------------------------ Table 8. Part of the contents in the file 'ddbjbct.org'. For the locus and accession number respectively given on the right to the arrow, the corresponding taxonomic names are listed on the left. They are arranged in the alphabetical order of the species names. ------------------------------------------------------------------------------ A. nidulans 6301 DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRUBPS X00019 A. nidulans DNA, clone pAN4. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGGX X00343 A. nidulans DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGG X00512 A. polyoxogenes genomic DNA. Acetobacter polyoxogenes Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. - > ABCADHCC D00635 A. quadruplicatum (strain PR-6) DNA, clone pAQPR1. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUPCAB K02660 A. quadruplicatum (strain PR6) DNA. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUCPCAB K02659 A. vinelandii DNA. Azotobacter vinelandii Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> AVINIFUSV M17349 A.aceti (strain 10-8) DNA, clone pAR1611. Acetobacter aceti Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> ABCAARAA M34830 A.actinomycetemcomitans (strain JP2) DNA, clone lambda-OP8. Actinobacillus actinomycetemcomitans Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Pasteurellaceae. -> ACNLKTXN M27399 A.anitratum DNA, clone pLJD1. Acinetobacter anitratum Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Neisseriaceae. -> ACCCITSYN M33037 ------------------------------------------------------------------------------ Table 9. Part of the short directory file in DDBJ style in the file 'ddbjbct.sdr'. The short directory file contains brief descriptions of all of the sequence entries contained in the DDBJ style. ------------------------------------------------------------------------------ ABCAARAA A.aceti acetic acid resistance protein (aarA) gene, complete 1624bp ABCADHCC A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and 4230bp ABCALDH A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, 2683bp ABCBCSABCD A.xylinum bcs A, B, C and D genes, complete cds's. 9540bp ABCCELA Acetobacter xylinum UDP pyrophosphorylase (celA) gene, 1165bp ABCCELSYN A. xylinum gene for cellulose biosynthesis 5363bp ABCIS1380 A.pasteurianus insertion sequence IS1380. 1665bp ACAADH1 Acetobacter aceti(K6033) alcohol dehydrogenase subunit 2467bp ACCAAC2 Acinetobacter baumannii aminoglycoside acetyltransferase 1123bp ACCACEAA A.baumannii chloramphenicol acetyltransferase (cat) gene, 1874bp ACCAPHA6 Acinetobacter baumannii aphA-6 gene. 1170bp ACCBENABCA A.calcoaceticus BenA, BenB, BenC, BenD, and BenE proteins 15922bp ACCCAT Acinetobacter calcoaceticus cat operon. 15922bp ACCCATAM A.calcoaceticus catA and catM genes, encoding catechol 1, 5537bp ACCCHMO Acinetobacter sp. cyclohexanone monooxygenase gene, complete 2128bp ACCCITSYN A.anitratum citrate synthase gene, complete cds. 1895bp ------------------------------------------------------------------------------ In addition to the 9 tables the four following index files are included in this release. These files were prepared irrespective of the 10 categories of taxonomic divisions. Accession number index file Keyword phrase index file Journal citation index file Gene name index file A brief description is given for each file in the following. Table 10. Part of the accession number index file in the 'ddbjacc.idx'. The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00100 PSEASPAA BCT D00100 D00101 RABNP450R MAM D00101 D00102 HUMLTX HUM D00102 D00103 AFARRN5SA BCT D00103 AFRRN5SA BCT X05517 D00104 AFARRN5SB BCT D00104 AFRRN5SB BCT X05518 D00105 AFARRN5S BCT D00105 ASRRN5S BCT X05524 D00106 ACH5SRR BCT D00106 AXRRN5S BCT X05522 AXRRN5SA BCT X05523 D00107 ACH5SRRX BCT D00107 ACRRN5S BCT X05521 ------------------------------------------------------------------------------ Table 11. Part of the keyword phrase index file in the 'ddbjkey.idx'. Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ A CHANNEL DROCHA INV M17155 A COMPONENT SQLCVEA VRL M38183 A LOCUS GORGOGOA3 PRI X54375 GORGOGOA4 PRI X54376 A LOCUS ALLELE GORA0101 PRI X60258 GORA0201 PRI X60259 GORA0401 PRI X60257 GORA0501 PRI X60256 A MULTI-GENE FAMILY RICGLUTE PLN D00584 A PROTEIN MS2AAR PHG M25187 ST1APCS PHG M25396 A SEQUENCE HS5TOA30 VRL D00148 HS5TOA31 VRL D00147 ------------------------------------------------------------------------------ Table 12. Part of the journal citation index file in 'ddbjjou.idx'. The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ ACTA BIOCHIM. BIOPHYS. SIN. 23, 246-253 (1992) HUMPLASINS HUM M98056 ACTA BIOCHIM. BIOPHYS. SIN. 28, 233-239(1996) TKTII PLN X82230 ACTA BIOCHIM. POL. 24, 301-318 (1977) LUPTRFJ PLN K00345 LUPTRFN PLN K00346 ACTA BIOCHIM. POL. 26, 369-381(1979) HVTRNPHE PLN X02683 ACTA BIOCHIM. POL. 29, 143-149 (1982) EMEMTA PLN M32572 EMEMTB PLN M32573 EMEMTC PLN M32574 EMEMTD PLN M32575 EMEMTE PLN M32576 ACTA BIOCHIM. POL. 34, 21-27 (1987) LUPNOSP PLN M32571 ------------------------------------------------------------------------------ Table 13. Part of the gene name index file in 'ddbjgen.idx'. This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ AACC8 STMAACC8 BCT M55426 AACC9 MPUAACC9 BCT M55427 AACT HUMA1ACM PRI K01500 HUMA1ACMA PRI X00947 HUMA1ACMB PRI M18035 HUMAACT1 PRI M18906 HUMAACT2 PRI M22533 HUMAACTA PRI J05176 AAD INTINTORF BCT L06418 LMOMO229D BCT X17478 AAD A1 ENTAAC3VI BCT M88012 AAD9 ENEAAD9A BCT M69221 AADA LMOMO229A BCT X17479 S52249 BCT S52249 SYNAADA SYN M60473 TRNTAAB BCT M55547 TRNTN21CAS BCT M86913 ------------------------------------------------------------------------------ The files in this release are arranged in the following order with non-labeled format. Category number of number of file name file size entries bases Release note ddbjrel.txt 72421 bacteria1 28325 120321805 ddbjbct1.seq 299041039 bacteria2 6877 130913011 ddbjbct2.seq 299625645 bacteria3 48591 116187543 ddbjbct3.seq 299002020 bacteria4 53564 108026785 ddbjbct4.seq 299146839 bacteria5 26732 130949801 ddbjbct5.seq 299001618 bacteria6 40062 118220823 ddbjbct6.seq 299034729 bacteria7 36927 73278934 ddbjbct7.seq 195030845 CON 16190 0 ddbjcon.seq 64476558 EST1 90092 33919201 ddbjest1.seq 299000961 EST2 94909 38175564 ddbjest2.seq 299002718 EST3 95456 37053779 ddbjest3.seq 299000508 EST4 89429 28106820 ddbjest4.seq 299000560 EST5 94290 36413936 ddbjest5.seq 299001554 EST6 98428 39008125 ddbjest6.seq 298999953 EST7 98537 38046950 ddbjest7.seq 299002561 EST8 97457 37753782 ddbjest8.seq 299002153 EST9 98174 38758905 ddbjest9.seq 299002652 EST10 99189 38789629 ddbjest10.seq 299003488 EST11 97700 39026354 ddbjest11.seq 299000423 EST12 96811 43308671 ddbjest12.seq 299001170 EST13 105349 42364734 ddbjest13.seq 299001283 EST14 101826 41099262 ddbjest14.seq 299003242 EST15 97670 40980111 ddbjest15.seq 299001534 EST16 94481 42210153 ddbjest16.seq 299002230 EST17 96914 39088603 ddbjest17.seq 299000147 EST18 97882 42658046 ddbjest18.seq 299004040 EST19 96155 41859521 ddbjest19.seq 299002408 EST20 95217 38999913 ddbjest20.seq 299000808 EST21 108545 52137587 ddbjest21.seq 299000013 EST22 111728 48896188 ddbjest22.seq 299001992 EST23 87286 85526985 ddbjest23.seq 299001653 EST24 116794 65583557 ddbjest24.seq 299000215 EST25 121475 61839046 ddbjest25.seq 299001244 EST26 130980 57080290 ddbjest26.seq 299000985 EST27 118494 64902719 ddbjest27.seq 299000389 EST28 108972 40758262 ddbjest28.seq 299000618 EST29 92298 24565620 ddbjest29.seq 299002638 EST30 90996 26764564 ddbjest30.seq 299002389 EST31 60443 16481599 ddbjest31.seq 299004105 EST32 60484 16640500 ddbjest32.seq 299004346 EST33 87296 32643401 ddbjest33.seq 299001423 EST34 120643 55014293 ddbjest34.seq 299001735 EST35 108061 55947754 ddbjest35.seq 299002540 EST36 107101 51689093 ddbjest36.seq 299000708 EST37 130072 67170348 ddbjest37.seq 299000018 EST38 95710 41510347 ddbjest38.seq 299002088 EST39 90014 39411004 ddbjest39.seq 299003370 EST40 92153 39779173 ddbjest40.seq 299003249 EST41 100668 40521609 ddbjest41.seq 299001954 EST42 94983 37475239 ddbjest42.seq 299004742 EST43 82657 36839963 ddbjest43.seq 299002996 EST44 95238 42242180 ddbjest44.seq 299001038 EST45 97731 44051113 ddbjest45.seq 299002078 EST46 96534 35230455 ddbjest46.seq 299002153 EST47 108718 48050677 ddbjest47.seq 299000562 EST48 65614 19861170 ddbjest48.seq 299002217 EST49 60263 17458591 ddbjest49.seq 299000774 EST50 60358 18578773 ddbjest50.seq 299002435 EST51 60336 18871594 ddbjest51.seq 299000531 EST52 60377 18879591 ddbjest52.seq 299003091 EST53 60316 18056516 ddbjest53.seq 299002079 EST54 60922 18612781 ddbjest54.seq 299004405 EST55 61716 18733046 ddbjest55.seq 299002618 EST56 61578 19477313 ddbjest56.seq 299002320 EST57 62322 17535094 ddbjest57.seq 299003395 EST58 58200 34288170 ddbjest58.seq 299002263 EST59 55021 25365800 ddbjest59.seq 299000006 EST60 54706 23956145 ddbjest60.seq 299000685 EST61 54641 22696502 ddbjest61.seq 299000457 EST62 60969 24714667 ddbjest62.seq 299000471 EST63 93636 39647263 ddbjest63.seq 299001130 EST64 95830 38725336 ddbjest64.seq 299001947 EST65 97181 54946005 ddbjest65.seq 299001214 EST66 99128 52971185 ddbjest66.seq 299002350 EST67 98017 47328413 ddbjest67.seq 299000136 EST68 94230 52748330 ddbjest68.seq 299002902 EST69 94746 45311468 ddbjest69.seq 299000533 EST70 95720 56281946 ddbjest70.seq 299000270 EST71 93706 47761334 ddbjest71.seq 299001265 EST72 89337 52662612 ddbjest72.seq 299000460 EST73 90439 44617577 ddbjest73.seq 299001932 EST74 95293 57872912 ddbjest74.seq 299001077 EST75 89972 54054638 ddbjest75.seq 299003087 EST76 94878 54224552 ddbjest76.seq 299001860 EST77 91523 38695020 ddbjest77.seq 299001831 EST78 85215 45538682 ddbjest78.seq 299002426 EST79 83780 45644590 ddbjest79.seq 299000190 EST80 92444 57193284 ddbjest80.seq 299000141 EST81 97200 42632063 ddbjest81.seq 299000917 EST82 95833 34453585 ddbjest82.seq 299002352 EST83 95148 42725413 ddbjest83.seq 299002201 EST84 85325 43976514 ddbjest84.seq 299002269 EST85 102518 62027104 ddbjest85.seq 299000662 EST86 98047 59443458 ddbjest86.seq 299003085 EST87 87842 52266091 ddbjest87.seq 299000673 EST88 93152 62969736 ddbjest88.seq 299000873 EST89 89678 56093750 ddbjest89.seq 299000964 EST90 95649 54016870 ddbjest90.seq 299001509 EST91 94353 63697734 ddbjest91.seq 299000758 EST92 93871 62843647 ddbjest92.seq 299003468 EST93 100080 53269195 ddbjest93.seq 299000987 EST94 97365 36621768 ddbjest94.seq 299000366 EST95 103828 61246546 ddbjest95.seq 299000299 EST96 96246 57340973 ddbjest96.seq 299002836 EST97 84241 41285454 ddbjest97.seq 299000853 EST98 88290 48500773 ddbjest98.seq 299001687 EST99 84978 46677839 ddbjest99.seq 299001900 EST100 91763 55415253 ddbjest100.seq 299001568 EST101 91825 57120185 ddbjest101.seq 299002211 EST102 86067 49788005 ddbjest102.seq 299002204 EST103 95777 55925109 ddbjest103.seq 299000794 EST104 79560 48284779 ddbjest104.seq 299003136 EST105 108344 58717871 ddbjest105.seq 299001502 EST106 105235 59716763 ddbjest106.seq 299003859 EST107 109040 56758571 ddbjest107.seq 299001370 EST108 130693 69679809 ddbjest108.seq 299000393 EST109 119963 66954898 ddbjest109.seq 299001228 EST110 95763 56801800 ddbjest110.seq 299001295 EST111 90316 52389728 ddbjest111.seq 299002702 EST112 85278 39545231 ddbjest112.seq 299000242 EST113 72616 33825914 ddbjest113.seq 299004457 EST114 82479 40362278 ddbjest114.seq 299002001 EST115 73268 38083970 ddbjest115.seq 299001688 EST116 100053 66782871 ddbjest116.seq 299003131 EST117 85674 55981720 ddbjest117.seq 299000235 EST118 95101 54701853 ddbjest118.seq 299001011 EST119 79569 39442715 ddbjest119.seq 299000909 EST120 84270 49539744 ddbjest120.seq 299001501 EST121 83011 54261221 ddbjest121.seq 299002409 EST122 91145 50968092 ddbjest122.seq 299001367 EST123 103359 59441714 ddbjest123.seq 299001081 EST124 91157 51126337 ddbjest124.seq 299001779 EST125 86898 56044390 ddbjest125.seq 299003105 EST126 76524 44446511 ddbjest126.seq 299001917 EST127 88782 53399984 ddbjest127.seq 299001630 EST128 96240 37352886 ddbjest128.seq 299002465 EST129 92357 55936450 ddbjest129.seq 299001121 EST130 93244 47100607 ddbjest130.seq 299002714 EST131 88730 52509598 ddbjest131.seq 299003248 EST132 90007 63346315 ddbjest132.seq 299000753 EST133 86830 45462759 ddbjest133.seq 299000324 EST134 88953 66873345 ddbjest134.seq 299003179 EST135 87519 51786666 ddbjest135.seq 299001729 EST136 92243 53345033 ddbjest136.seq 299001713 EST137 89777 74190595 ddbjest137.seq 299003565 EST138 82166 60443077 ddbjest138.seq 299000498 EST139 81645 60362295 ddbjest139.seq 299000587 EST140 83632 59042956 ddbjest140.seq 299000937 EST141 84408 63463446 ddbjest141.seq 299002295 EST142 79710 50730543 ddbjest142.seq 299001375 EST143 81943 44340704 ddbjest143.seq 299001681 EST144 88504 50633653 ddbjest144.seq 299001404 EST145 112621 67542741 ddbjest145.seq 299000749 EST146 92155 56679634 ddbjest146.seq 299001941 EST147 132048 82832097 ddbjest147.seq 299001056 EST148 136058 81395469 ddbjest148.seq 299001973 EST149 101046 58418578 ddbjest149.seq 299001148 EST150 79873 58622384 ddbjest150.seq 299001540 EST151 85948 88451256 ddbjest151.seq 299002416 EST152 96781 62554188 ddbjest152.seq 299002164 EST153 101800 57202756 ddbjest153.seq 299002376 EST154 101227 72215766 ddbjest154.seq 299001735 EST155 76444 44149009 ddbjest155.seq 299001849 EST156 58766 22033581 ddbjest156.seq 299005859 EST157 56680 20013443 ddbjest157.seq 299002733 EST158 57265 20796821 ddbjest158.seq 299004856 EST159 56464 21509752 ddbjest159.seq 299002985 EST160 56100 23433589 ddbjest160.seq 299000994 EST161 57960 19655470 ddbjest161.seq 299002118 EST162 58630 23064118 ddbjest162.seq 299003329 EST163 56818 24029416 ddbjest163.seq 299002468 EST164 55590 23047045 ddbjest164.seq 299003716 EST165 55708 23753025 ddbjest165.seq 299004897 EST166 56410 22822723 ddbjest166.seq 299004715 EST167 56324 22149654 ddbjest167.seq 299003190 EST168 53023 35983521 ddbjest168.seq 299005622 EST169 93763 36103872 ddbjest169.seq 299001047 EST170 112781 54826478 ddbjest170.seq 299003000 EST171 88623 57371605 ddbjest171.seq 299000419 EST172 89331 57405127 ddbjest172.seq 299000845 EST173 86207 54132901 ddbjest173.seq 299002426 EST174 99048 56459045 ddbjest174.seq 299003269 EST175 87238 53284652 ddbjest175.seq 299001019 EST176 86633 42909915 ddbjest176.seq 299001566 EST177 127884 59468193 ddbjest177.seq 299003074 EST178 94031 52785998 ddbjest178.seq 299002760 EST179 85407 41183895 ddbjest179.seq 299002366 EST180 87696 53851099 ddbjest180.seq 299001174 EST181 93497 43779264 ddbjest181.seq 299002101 EST182 91199 53987885 ddbjest182.seq 299001394 EST183 84674 46010902 ddbjest183.seq 299000199 EST184 87921 48115638 ddbjest184.seq 299002970 EST185 110162 59023582 ddbjest185.seq 299000653 EST186 102996 67749756 ddbjest186.seq 299002081 EST187 111531 68568963 ddbjest187.seq 299000466 EST188 125764 59793838 ddbjest188.seq 299000101 EST189 97133 57137878 ddbjest189.seq 299003314 EST190 93562 52618603 ddbjest190.seq 299002131 EST191 95039 43084017 ddbjest191.seq 299001799 EST192 93252 47994583 ddbjest192.seq 299000329 EST193 79860 45911571 ddbjest193.seq 299002078 EST194 87076 52712379 ddbjest194.seq 299001940 EST195 86127 58522045 ddbjest195.seq 299000492 EST196 84039 44957262 ddbjest196.seq 299002470 EST197 111634 57705719 ddbjest197.seq 299002071 EST198 102288 59606017 ddbjest198.seq 299001429 EST199 142896 65964044 ddbjest199.seq 299000671 EST200 124966 55252878 ddbjest200.seq 299001674 EST201 87991 47201811 ddbjest201.seq 299000566 EST202 92133 59140799 ddbjest202.seq 299001577 EST203 101708 50719407 ddbjest203.seq 299001942 EST204 89556 55456112 ddbjest204.seq 299000724 EST205 79461 48799992 ddbjest205.seq 299003657 EST206 69394 38509847 ddbjest206.seq 299002097 EST207 83475 51066321 ddbjest207.seq 299000096 EST208 89657 51567669 ddbjest208.seq 299000377 EST209 85715 51854622 ddbjest209.seq 299000519 EST210 91379 63683650 ddbjest210.seq 299003157 EST211 81041 62488819 ddbjest211.seq 299000653 EST212 77953 43761617 ddbjest212.seq 299004201 EST213 94307 65397417 ddbjest213.seq 299002577 EST214 98431 49599292 ddbjest214.seq 299001570 EST215 84776 47634177 ddbjest215.seq 299003648 EST216 81095 42577945 ddbjest216.seq 299000719 EST217 111721 43023317 ddbjest217.seq 299001863 EST218 90069 32789652 ddbjest218.seq 299001315 EST219 95614 35213719 ddbjest219.seq 299002142 EST220 92948 33617312 ddbjest220.seq 298999946 EST221 100835 34544115 ddbjest221.seq 299000553 EST222 90025 37500543 ddbjest222.seq 299003032 EST223 32144 10738515 ddbjest223.seq 91081134 GSS1 104907 76505925 ddbjgss1.seq 299001393 GSS2 100338 71971324 ddbjgss2.seq 299000779 GSS3 117492 57578838 ddbjgss3.seq 299000914 GSS4 98687 75350490 ddbjgss4.seq 299000268 GSS5 82039 68875705 ddbjgss5.seq 299003149 GSS6 79662 73825737 ddbjgss6.seq 299003473 GSS7 82883 58769074 ddbjgss7.seq 299000789 GSS8 110434 45848265 ddbjgss8.seq 299001957 GSS9 117038 47829779 ddbjgss9.seq 299001170 GSS10 112945 52931845 ddbjgss10.seq 299002417 GSS11 102194 53418434 ddbjgss11.seq 299001263 GSS12 102384 52104662 ddbjgss12.seq 299002086 GSS13 98639 49559246 ddbjgss13.seq 299001722 GSS14 99989 50499503 ddbjgss14.seq 299001402 GSS15 92618 47262109 ddbjgss15.seq 299001562 GSS16 97173 54190471 ddbjgss16.seq 299002803 GSS17 89283 47603990 ddbjgss17.seq 299003422 GSS18 94936 55525483 ddbjgss18.seq 299000974 GSS19 91404 52423564 ddbjgss19.seq 299001010 GSS20 94198 47011880 ddbjgss20.seq 299001150 GSS21 94463 52692274 ddbjgss21.seq 299003138 GSS22 81865 38273791 ddbjgss22.seq 299002741 GSS23 73577 38001065 ddbjgss23.seq 299001453 GSS24 75568 32711521 ddbjgss24.seq 299000748 GSS25 84573 50272103 ddbjgss25.seq 299002941 GSS26 74885 34473637 ddbjgss26.seq 299000577 GSS27 89255 53261612 ddbjgss27.seq 299000936 GSS28 79491 31445103 ddbjgss28.seq 299002946 GSS29 81247 39296914 ddbjgss29.seq 299002791 GSS30 83077 42240884 ddbjgss30.seq 299003592 GSS31 93986 50019887 ddbjgss31.seq 299002332 GSS32 91808 59693030 ddbjgss32.seq 299001801 GSS33 100605 49598290 ddbjgss33.seq 299001667 GSS34 97688 52195793 ddbjgss34.seq 299000173 GSS35 108476 65357078 ddbjgss35.seq 299000875 GSS36 119466 79365122 ddbjgss36.seq 299001468 GSS37 115202 63463575 ddbjgss37.seq 299000158 GSS38 110386 52782792 ddbjgss38.seq 299001667 GSS39 107131 45280584 ddbjgss39.seq 299000465 GSS40 111299 74363470 ddbjgss40.seq 299000358 GSS41 117840 65789411 ddbjgss41.seq 299000070 GSS42 101344 62688168 ddbjgss42.seq 299000476 GSS43 93951 62917486 ddbjgss43.seq 299002680 GSS44 93050 61405280 ddbjgss44.seq 299002236 GSS45 101063 52416441 ddbjgss45.seq 299001704 GSS46 108059 70420006 ddbjgss46.seq 299001371 GSS47 111129 87545320 ddbjgss47.seq 299001392 GSS48 112101 64423188 ddbjgss48.seq 299001254 GSS49 114438 75500155 ddbjgss49.seq 299000565 GSS50 99012 56851234 ddbjgss50.seq 299000562 GSS51 102118 62897612 ddbjgss51.seq 299001237 GSS52 116914 55054461 ddbjgss52.seq 299002043 GSS53 111026 65480343 ddbjgss53.seq 299002197 GSS54 98320 85991213 ddbjgss54.seq 299000178 GSS55 96777 96645893 ddbjgss55.seq 299001762 GSS56 116531 85158105 ddbjgss56.seq 299000791 GSS57 85685 56444348 ddbjgss57.seq 299000421 GSS58 93639 65989881 ddbjgss58.seq 299001835 GSS59 114029 84526514 ddbjgss59.seq 299001853 GSS60 108818 66325622 ddbjgss60.seq 299002096 GSS61 114075 73866741 ddbjgss61.seq 299002416 GSS62 125503 72196941 ddbjgss62.seq 299000725 GSS63 127739 69522197 ddbjgss63.seq 299002350 GSS64 128601 68396595 ddbjgss64.seq 299000199 GSS65 130127 66407111 ddbjgss65.seq 299000150 GSS66 130224 66280561 ddbjgss66.seq 299001389 GSS67 130003 66568718 ddbjgss67.seq 299001431 GSS68 126163 71439227 ddbjgss68.seq 299001609 GSS69 114210 88613270 ddbjgss69.seq 299000173 GSS70 113168 89171245 ddbjgss70.seq 299002031 GSS71 111735 88586767 ddbjgss71.seq 299001921 GSS72 112604 80595229 ddbjgss72.seq 299001209 GSS73 121491 35542124 ddbjgss73.seq 299001590 GSS74 118953 46096445 ddbjgss74.seq 299000031 GSS75 104048 60614233 ddbjgss75.seq 299002580 GSS76 108900 70894048 ddbjgss76.seq 298999963 GSS77 105342 80532721 ddbjgss77.seq 299001279 GSS78 100330 101255713 ddbjgss78.seq 299001272 GSS79 108295 65861692 ddbjgss79.seq 299001576 GSS80 59585 39505822 ddbjgss80.seq 159393843 HTC1 37946 68171555 ddbjhtc1.seq 299002514 HTC2 47488 84572532 ddbjhtc2.seq 299002374 HTC3 85615 73123771 ddbjhtc3.seq 245841882 HTG1 1584 227725508 ddbjhtg1.seq 299235498 HTG2 3381 224532755 ddbjhtg2.seq 299191997 HTG3 3059 226010579 ddbjhtg3.seq 299002220 HTG4 1900 226002913 ddbjhtg4.seq 299123227 HTG5 1540 224771213 ddbjhtg5.seq 299241398 HTG6 1510 224843980 ddbjhtg6.seq 299106774 HTG7 1548 224594959 ddbjhtg7.seq 299202505 HTG8 1345 227888615 ddbjhtg8.seq 299018343 HTG9 1830 223027185 ddbjhtg9.seq 299314472 HTG10 1136 229941218 ddbjhtg10.seq 299349563 HTG11 897 230138044 ddbjhtg11.seq 299074970 HTG12 891 230123837 ddbjhtg12.seq 299071549 HTG13 957 229981984 ddbjhtg13.seq 299097551 HTG14 913 230255622 ddbjhtg14.seq 299273904 HTG15 1626 223381394 ddbjhtg15.seq 299033062 HTG16 1764 221665163 ddbjhtg16.seq 299137069 HTG17 1298 226838978 ddbjhtg17.seq 299094902 HTG18 1112 228437999 ddbjhtg18.seq 299162879 HTG19 953 229678136 ddbjhtg19.seq 299027052 HTG20 1162 228431515 ddbjhtg20.seq 299154153 HTG21 1069 229424515 ddbjhtg21.seq 299563856 HTG22 975 229608187 ddbjhtg22.seq 299216911 HTG23 996 229531217 ddbjhtg23.seq 299087913 HTG24 1035 229408431 ddbjhtg24.seq 299068052 HTG25 1114 228806415 ddbjhtg25.seq 299073263 HTG26 1173 228394226 ddbjhtg26.seq 299175447 HTG27 1118 228737874 ddbjhtg27.seq 299114303 HTG28 1182 228376784 ddbjhtg28.seq 299131138 HTG29 1065 229340291 ddbjhtg29.seq 299271452 HTG30 1057 229583831 ddbjhtg30.seq 299027390 HTG31 1200 228607396 ddbjhtg31.seq 299217650 HTG32 1051 229284651 ddbjhtg32.seq 299026461 HTG33 1033 229633497 ddbjhtg33.seq 299319249 HTG34 1033 229398693 ddbjhtg34.seq 299145722 HTG35 1109 228993773 ddbjhtg35.seq 299195433 HTG36 1147 229445394 ddbjhtg36.seq 298999952 HTG37 1144 228829616 ddbjhtg37.seq 299025993 HTG38 1244 228548444 ddbjhtg38.seq 299304327 HTG39 1437 226515061 ddbjhtg39.seq 299145289 HTG40 1439 228027906 ddbjhtg40.seq 299062567 HTG41 1381 228248953 ddbjhtg41.seq 299114996 HTG42 1366 227225867 ddbjhtg42.seq 299179827 HTG43 1321 229117583 ddbjhtg43.seq 299376834 HTG44 1451 229253122 ddbjhtg44.seq 299171226 HTG45 1422 230029444 ddbjhtg45.seq 299174602 HTG46 1452 229232404 ddbjhtg46.seq 298746685 HTG47 1290 230098935 ddbjhtg47.seq 301363685 HTG48 1476 230889439 ddbjhtg48.seq 299164208 HTG49 1270 231524413 ddbjhtg49.seq 299110544 HTG50 1201 232222430 ddbjhtg50.seq 299345607 HTG51 1244 230813135 ddbjhtg51.seq 299188137 HTG52 242 30207754 ddbjhtg52.seq 39335006 human1 12733 193350475 ddbjhum1.seq 299133164 human2 1612 212441790 ddbjhum2.seq 299182103 human3 1572 217307497 ddbjhum3.seq 299258369 human4 1351 206550698 ddbjhum4.seq 299276174 human5 1449 213575045 ddbjhum5.seq 299072185 human6 1464 210368255 ddbjhum6.seq 299026033 human7 1545 204265077 ddbjhum7.seq 299170718 human8 1638 213552902 ddbjhum8.seq 299104613 human9 1497 208468457 ddbjhum9.seq 299039938 human10 1797 209539412 ddbjhum10.seq 299043834 human11 1951 212875405 ddbjhum11.seq 299175177 human12 33930 168415784 ddbjhum12.seq 299001376 human13 68202 101327126 ddbjhum13.seq 299000139 human14 15979 171846295 ddbjhum14.seq 299108644 human15 3556 208102200 ddbjhum15.seq 299208452 human16 2118 216589197 ddbjhum16.seq 299139165 human17 2485 217193915 ddbjhum17.seq 299005855 human18 5235 219744232 ddbjhum18.seq 299053920 human19 1729 222590286 ddbjhum19.seq 299100599 human20 45472 95239815 ddbjhum20.seq 299008132 human21 133818 94357271 ddbjhum21.seq 299001742 human22 178943 72499462 ddbjhum22.seq 299003321 human23 177645 94436047 ddbjhum23.seq 299014983 human24 70719 113369003 ddbjhum24.seq 290480799 invertebrates1 12178 208003835 ddbjinv1.seq 299162120 invertebrates2 8936 180013392 ddbjinv2.seq 299001251 invertebrates3 91393 90208242 ddbjinv3.seq 299002682 invertebrates4 65359 106982770 ddbjinv4.seq 299003711 invertebrates5 54321 158543175 ddbjinv5.seq 299021647 invertebrates6 4030 40634861 ddbjinv6.seq 78704460 mammals 57857 78621055 ddbjmam.seq 212137278 patens1 255331 88976197 ddbjpat1.seq 299000128 patens2 218261 104989895 ddbjpat2.seq 299000587 patens3 166023 99470597 ddbjpat3.seq 299010842 patens4 130393 132462963 ddbjpat4.seq 299195714 patens5 159588 108005642 ddbjpat5.seq 299109644 patens6 154149 108814188 ddbjpat6.seq 299001786 patens7 177247 66909502 ddbjpat7.seq 299001117 patens8 125071 73823088 ddbjpat8.seq 299001654 patens9 135099 62499694 ddbjpat9.seq 299000195 patens10 120030 42754994 ddbjpat10.seq 179360304 phages 2458 11614985 ddbjphg.seq 29423339 plants1 25442 166259950 ddbjpln1.seq 299280249 plants2 40219 163267757 ddbjpln2.seq 299000734 plants3 89243 94050447 ddbjpln3.seq 299002134 plants4 65767 64600911 ddbjpln4.seq 299006723 plants5 24447 123268314 ddbjpln5.seq 299108257 plants6 1836 208810587 ddbjpln6.seq 299126303 plants7 59867 112390065 ddbjpln7.seq 299001424 plants8 73395 103072416 ddbjpln8.seq 299008810 plants9 20439 45542661 ddbjpln9.seq 113325792 primates 25447 165081839 ddbjpri.seq 262423891 rodents1 7618 206651191 ddbjrod1.seq 299100875 rodents2 1058 210201435 ddbjrod2.seq 299068632 rodents3 1177 215776183 ddbjrod3.seq 299028446 rodents4 1194 216681701 ddbjrod4.seq 299016364 rodents5 33840 168775661 ddbjrod5.seq 299071966 rodents6 1423 232071217 ddbjrod6.seq 299184825 rodents7 1470 231221134 ddbjrod7.seq 299072490 rodents8 25069 168674944 ddbjrod8.seq 299006595 rodents9 52444 129588642 ddbjrod9.seq 299004224 rodents10 9653 11509998 ddbjrod10.seq 35697406 STS1 104411 57884105 ddbjsts1.seq 299000817 STS2 105147 40669833 ddbjsts2.seq 299001341 STS3 53761 24027594 ddbjsts3.seq 144579928 synthetic DNAs 12056 18742788 ddbjsyn.seq 50444999 TPA 3952 13165310 ddbjtpa.seq 29126809 unannotated sequences 1341 603111 ddbjuna.seq 3239870 viruses1 86374 76922854 ddbjvrl1.seq 299001623 viruses2 87324 77261743 ddbjvrl2.seq 299001471 viruses3 46332 46224274 ddbjvrl3.seq 162750121 vertebrates1 72284 111528263 ddbjvrt1.seq 299259018 vertebrates2 37187 165655988 ddbjvrt2.seq 299002446 vertebrates3 6099 210806508 ddbjvrt3.seq 299017361 vertebrates4 26688 47874645 ddbjvrt4.seq 115012305 Accession number index file 0 0 ddbjacc.idx 1274465847 Gene name index file 0 0 ddbjgen.idx 58471149 Journal citation index file 0 0 ddbjjou.idx 1445186018 Keyword phrase index file 0 0 ddbjkey.idx 1169965682 ------------------------------------------------------- EST: expressed sequence tag CON: Contig sequences GSS: genome survey sequence HTC: high throughput cDNA HTG: high throughput genome sequence STS: sequence tagged site TPA: third party annotation