DNA Data Bank of Japan DNA Database Release 60, Dec. 2004, including 40,583,945 entries, 44,416,752,273 bases This database may be copied and redistributed without permission on the condition that all the statements in this release note are reproduced in each copy. The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank, and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of November 25, 2004. This unified database was made possible thanks to the international collaboration among the threedata banks. All the entries have accordingly been annotated using the feature keys common to them. All the entries designated by the accession numbers with the prefixes "C", "CJ", "D", "E", "AB", "AG", "AK", "AP", "AT", "AU", "AV", "BA", "BB", "BD", "BJ", "BP", "BR", "BS", "BW" and "BY" have been collected and processed by DDBJ, and the rest have been prepared by GenBank and EMBL/EBI. There have been a number of genome projects going on worldwide. Among them human genome projects have probably been most productive and yielded a large number of ordinary sequences, huge amounts of ESTs and quantities of genome sequences. Thus, we have the human(HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. The HUM division in this release was recorded in 22 files each of which had 300 MB storage capacity. Incidentally, the BCT, HTC, INV, PLN, ROD, STS, VRL and VRT divisions were recorded in 9, 5, 6, 11, 13, 4, 4, 6 files, respectively. Note that the EST division also contains human sequences. The present release does not have the ORG division. Thus, if you are Interested in human mitochondrial sequences, for example, you are now advised to refer to the HUM division. This release includes a division (PAT) for patent data. The patent data are those which the Japanese Patent Office (JPO), United States Patent and Trademark Office (USPTO), and the European Patent Office (EPO) collected and processed. The accession numbers of the patent data collected by the Japanese Patent Office start with the prefix "E" and "BD", those collected and supplied by USPTO and GenBank respectively start with "I" and "AR", and those collected and supplied by EPO and EMBL/EBI respectively start with "A" "AX" and "CQ". The entries with the prefixes "I", "AR", "A", "AX", "CQ", "E" and "BD" were allocated to 16 files (ddbjpat1.seq _ ddbjpat16.seq) in the DDBJ format. Note also that unauthorized use of the patent data may cause legal issues for which we take no responsibility. In the present release, the SOURCE in the flat file was revisited and revised if necessary in accordance with the unified taxonomy database common to the three data banks. The number of ESTs has been increasing at an enormous rate and is expected to be growing even more rapidly in the future. Therefore, EST data were stored in 268 files each of which had the same storage capacity as the file of the HUM division. The present release includes the GSS division. GSS stands for the Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. This division was recorded in 104 files similarly to the HUM division. This release also includes the High Throughput Genomic Sequence (HTGS), which comes mainly from genome project teams which deal with a clone as a sequencing unit. HTGS in this release were recorded in 51 files similarly to the HUM division. The index files are not presented in this release except for ddbjacc.idx, ddbjgen.idx, ddbjjou.idx, and ddbjkey.idx. Instead, we have included a program by which to make the index files not presented in this release. For the use of the program, see the files, seq2indexes.doc, seq2indexes.c, and seq2indexes.h in this release. The present release contains amino acid sequences that were translated from the corresponding nucleotide sequences in our database. In the translation we paid much attention to the fact that some species or organella have a codon different from the universal one, and used the proper codon table. If you find an incorrect codon in a translated sequence, please let us know. The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence (see Table 1). It is expressed like AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. We terminated the RNA division. The RNA data have been redistributed according to the category of the organism. Therefore, you will find a human RNA sequence, for example, in the HUM division. The present release includes a division, CON. The CON division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. The current number of the entries of this division is 391,916. The entries and bases in the CON division are not counted in the released numbers on the top of the release note. The present release also includes, HTC (High Throughput cDNA). This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. Since release 51, TPA (Third Party Annotation) data have been available. The entries and bases in TPA are not counted in the released numbers on the top of the release note. Since release 54, '/sequenced_mol' qualifier has been changed to '/mol_type' qualifier. We accordingly completed retrofitting the pertinent entries. This change was made on the agreement at the INSD international collaborative meeting in 2002. /mol_type qualifier Definition: in vivo molecule type Value format: molecule type where molecule type is limited to followings; "genomic DNA", "genomic RNA", "mRNA" (incl. EST), "tRNA", "rRNA", "snoRNA", "snRNA", "scRNA", "pre-mRNA", "other RNA" (incl. synthetic), "other DNA" (incl. synthetic), "unassigned DNA" (incl. unknown), "unassigned RNA" (incl. unknown) The BASE COUNT line of the DDBJ flat file format has been changed since DDBJ release 56, corresponding to the relaxation of the maximum sequence length restriction (350,000 bp/entry) in the entry that had been practised at DDBJ/EMBL/GenBank International Nucleotide Sequence Databases. In the BASE COUNT line of the DDBJ flat file format, 6 digits had been allocated for each number of a, c, g, t and other bases in the sequence. Hereafter, in the new flat file format, 9 digits are allocated for each number of a, c, g and t, while the numbers of other bases are removed. In accordance with the relaxation of sequence length limitation, GenBank had already dropped the BASE COUNT line from their flat file format from GenBank Release 138 (Oct. 2003). We DDBJ have decided to maintain the BASE COUNT line in our flat file format from the view that GC contents are still important information to characterize the sequence. Prior to publication of release 56 in December, 2003, the new DDBJ flat file format is adopted to daily data update from Dec. 3. Following is an example of the new BASE COUNT line. 1 6 11 16 21 26 31 36 41 46 51 56 61 66 71 |----|----|----|----|----|----|----|----|----|----|----|----|----|----| BASE COUNT 123456789 a 123456789 c 123456789 g 123456789 t The three data banks have agreed that the maximum length limitation (350 kb) of a submitted sequence be relaxed. Since release 60, the cross-reference to the H-invitational has been included. This release is published by the following DDBJ staff. T. Gojobori, Y. Tateno, K. Nishikawa, H. Sugawara, N. Saitou, K. Okubo, K. Ikeo, Y. Suzuki, S. Fukuchi, A. Kinjo, K. Itoh, R. Barrero, T. Abe H. Aono, T. Atsumi, M. Ejima, N. Endo, D. Fukuda, M. Gojobori, Y. Hikino, T. Hirai, N. Hoshi, H. Ichikawa, K. Ichikawa, N. Ishizaka, T. Kato, T. Kawamoto, J. Kohira, T. Koike, R. Kokubo, T. Kosuge, A. Kusakabe, Y. Kuwana, Y. Lin, H. Maesako, K. Mamiya, N. Maruyama, J. Mashima, K. Mimura, H-J. Min, S. Miyazawa, N. Murakata, S. Nagira, M. Nagura, N. Nishinomiya, T. Okido, K. Sakai, Y. Shigemoto, H. Shiozawa, F. Sugiyama, M. Suzuki, T. Takaki, H. Tsutsui, M. Tsuboi, M. Yamaguchi, Y. Yamamoto, E. Yokoyama Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Research Organization of Information and Systems Mishima 411-8540, Japan Phone: +81 55 981 6853 FAX: +81 55 981 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp/ (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp/ (for DDBJ sequence data submission system) Acknowledgement: We are grateful to NCBI and EMBL/EBI for a firm friendship and an excellent collaboration with us. We also thank the Japanese Patent Office for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ Database Release History Release Date Entries Bases Comments 60 12/04 40,583,945 44,416,752,273 db_xref is started 59 09/04 37,926,117 42,245,956,937 58 06/04 34,917,581 39,812,635,108 57 03/04 32,693,678 38,008,449,840 56 12/03 30,405,173 36,079,046,032 55 09/03 27,753,140 34,280,225,489 54 06/03 25,149,821 32,162,041,177 53 02/03 23,250,813 29,711,299,332 52 12/02 20,354,812 26,931,456,316 51 09/02 18,401,358 22,782,404,136 TPA started 50 06/02 17,260,693 20,158,357,982 49 04/02 16,503,157 18,579,627,226 48 01/02 15,016,100 16,197,713,855 47 10/01 13,266,610 14,145,671,645 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------------------------------------------------------------ This release covers 20 categories of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct.*** Category for bacteria ddbjest.*** Category for EST (expressed sequence tag) ddbjcon.*** Category for CON (Contig sequences) ddbjhtc.*** Category for HTC (high throughput cDNA) ddbjhtg.*** Category for HTG (high throughput genomic sequence) ddbjhum.*** Category for human ddbjgss.*** Category for GSS (Genome Survey Sequence) ddbjinv.*** Category for invertebrates ddbjmam.*** Category for mammals other than primates and rodents ddbjpat.*** Category for patents ddbjphg.*** Category for phages ddbjpln.*** Category for plants ddbjpri.*** Category for primates other than human ddbjrod.*** Category for rodents ddbjsts.*** Category for STS (sequence tagged site) ddbjsyn.*** Category for synthetic DNAs ddbjtpa.*** Category for TPA (Third Party Annotation) ddbjuna.*** Category for unannotated sequences ddbjvrl.*** Category for viruses ddbjvrt.*** Category for vertebrates other than mammals ------------------------------------------------------------------------------ Each category then has the following nine files. Note that all the files except for ddbj***.seq are created by the user by use of seq2indexes as mentioned in the release note. ------------------------------------------------------------------------------ ddbj***.seq List of an entry in DDBJ format, see Table 1. ddbj***.acc List of the accession numbers, see Table 2 . ddbj***.aut List of the authors, see Table 3. ddbj***.dir List of the short directory in DDBJ style, see Table 4. ddbj***.idx List of indices, see Table 5. ddbj***.jou List of the journals, see Table 6. ddbj***.key List of the key words, see Table 7. ddbj***.org List of the species names, see Table 8. ddbj***.sdr List of the short directory in DDBJ style, see Table 9. ------------------------------------------------------------------------------ The format of LOCUS line in the flat file was changed as shown below to adjust to the GenBank format from release 51. ------------------------------------------------------------------------------ Old (-rel. 50): LOCUS AB000001 660 bp DNA PLN 01-FEB-2001 Present (rel. 51-): LOCUS AB000001 660 bp DNA linear PLN 01-FEB-2001 New format specification: --------- -------- Positions Contents --------- -------- 01-05 'LOCUS' 06-12 spaces 13-28 Locus name 29-29 space 30-40 Length of sequence, right-justified 41-41 space 42-43 bp 44-44 space 45-47 spaces, ss- (single-stranded), ds- (double-stranded), or ms- (mixed-stranded) 48-53 DNA, RNA, tRNA (transfer RNA), rRNA (ribosomal RNA), mRNA (messenger RNA), uRNA (small nuclear RNA), scRNA, snRNA, snoRNA. Left justified. 54-55 space 56-63 'linear' followed by two spaces, or 'circular' 64-64 space 65-67 The division code 68-68 space 69-79 Date, in the form dd-MMM-yyyy (e.g., 15-MAR-1991) ------------------------------------------------------------------------------ Table 1. Part of the contents in the file 'ddbjbct.seq'. This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA linear BCT 14-APR-2000 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Miki Jishage, National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail:mjishage@lab.nig.ac.jp, Tel:0559-81-6742, Fax:0559-81-6746) REFERENCE 2 (bases 1 to 993) AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol. Gen. Genet. 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /mol_type="mRNA" /organism="Escherichia coli" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /transl_table=11 /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK" variation 75 /citation=[3] /replace="t" variation 97 /citation=[3] /replace="t" variation 99 /citation=[3] /replace="t" variation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ Table 2. Part of the contents in the file 'ddbjbct.acc'. The first column refers to the secondary accession number, second column to the locus name, and third to the primary accession number. The primary number may be the same as the secondary number. They are arranged in the ascending order of the secondary accession numbers. ------------------------------------------------------------------------------ D00001 -> ECOPBPAA X04516 D00002 -> ECOPYRH X04469 D00006 -> PNS981TET D00006 D00020 -> COLE2LYS D00020 D00021 -> COLE31YS D00021 D00038 -> BRLAM330 D00038 D00066 -> BAC139AC D00066 D00067 -> ECONANA M20207 D00069 -> ECOUVRD2 D00069 D00087 -> BACXYNAA D00087 ------------------------------------------------------------------------------ Table 3. Part of the contents in the file 'ddbjbct.aut'. For each author name given on the left to the arrow, the corresponding locus name and primary accession number are respectively listed on the right. They are arranged in the alphabetical order of the author names. ------------------------------------------------------------------------------ Aan,F. -> STYCRR X05210 Aan,F. -> STYENZI M76176 Aaronson,W. -> ECOKPSD M64977 Aaronson,W. -> ECONEUA J05023 Abad-Lapuebla,M.A. -> VIBTDHI D90238 Abdel-Mawgood,A.L. -> CYAPSBHA X16394 Abdel-Meguid,S.S. -> TRNGDRECM J01843 Abdelal,A. -> STYCARA M36540 Abdelal,A. -> STYCARAB X13200 Abdelal,A.H. -> PSENOSA M60717 ------------------------------------------------------------------------------ Table 4. Part of the short directory in DDBJ style in the file 'ddbjbct.dir'. For each locus name given in the first column, the corresponding primary accession number, molecular type, number of nucleotide pairs, and description for the locus are respectively listed. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ ABCAARAA M34830 ds-DNA 1624 A.aceti acetic acid resistance protein (aarA) gene, complete cds. ABCADHCC D00635 ds-DNA 4230 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. ABCALDH D00521 ds-DNA 2683 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. ABCBCSAA M37202 ds-DNA 9540 A.xylinum bcs B, bcs C and bcs D genes, complete cds and bcs A gene, partial cds. ABCCELA M76548 ds-DNA 1165 Acetobacter xylinum UDP pyrophosphorylase (celA) gene, complete cds. ABCCELSYN X54676 ds-DNA 5363 A. xylinum gene for cellulose biosynthesis ABCIS1380 D10043 ds-DNA 1665 A.pasteurianus insertion sequence IS1380. ACAADH1 D90004 ds-DNA 2467 Acetobacter aceti(K6033) alcohol dehydrogenase subunit gene(adh1). ACCAAC2 M62833 ds-DNA 1123 Acinetobacter baumannii aminoglycoside acetyltr ansferase (aac2) gene, complete cds. ACCACEAA M62822 ds-DNA 1874 A.baumannii chloramphenicol acetyltransferase (cat) gene, complete cds. ------------------------------------------------------------------------------ Table 5. Part of the contents in the file 'ddbjbct.idx'. The first column refers to the locus name, second column to the starting site of the locus in byte, and third to its ending site in byte. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ %***************************** #ABCAARAA 0 3211 #ABCADHCC 3212 10608 #ABCALDH 10609 15864 #ABCBCSAA 15865 29583 #ABCCELA 29584 32289 #ABCCELSYN 32290 40960 #ABCIS1380 40961 44711 #ACAADH1 44712 49357 #ACCAAC2 49358 52395 ------------------------------------------------------------------------------ Table 6. Part of the contents in the file 'ddbjbct.jou'. This gives information on the journal in which sequence data were published. ------------------------------------------------------------------------------ (in) Chaloupka,J. and Krumphanzl,V. (Eds.); Extracellular Enzymes of Microorganisms: 129-137, Plenum Press, New York (1987) -> BACAMYABS M57457 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16S M55011 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SA M55006 (in) Ganesan,A.T., Chang,S. and Hoch,J.A. (Eds.); Molecular Cloning and Gene Regulation in Bacilli: 3-10, Academic Press, New York (1982) -> BACRG16SB M55008 (in) Hoch,J.A. and Setlow,P. (Eds.); Molecular Biology of Microbial Differentiation: 85-94, American Society for Microbiology, Washington, DC (1985) -> BACSPOII M57606 (in) Holmgren,A. (Ed.); Thioredoxin and Glutaredoxin Systems: Structure and Function: 11-19, Unknown name, Unknown city (1986) -> ECOTRXA1 M54881 (in) Kjeldgaard,N.C. and Maaloe,O. (Eds.); Control of ribosome synthesis: 138-143, Academic Press, New York (1976) -> ECOLAC J01636 (in) Losick,R. and Chamberlin,M. (Eds.); RNA polymerase: 455-472, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1976) -> ECOTGY1 K01197 (in) Sikes,C.S. and Wheeler,A.P. (Eds.); Surface reactive peptides and polymers. Discovery and commercialization.: 186-200, American Chemical Society, Washington, D.C. (1991) -> ECOTGP J01714 (in) Sund,H. and Blauer,G. (Eds.); Protein-Ligand Interactions: 193-207, Walter de Gruyter, New York (1975) -> ECOLAC J01636 (in) Wu,R. and Grossman,L. (Eds.); Methods in Enzymology, Recombinant DNA, part E: In press, Academic Press, New York, N.Y. (1986) -> PLMCG M11320 Acta Microbiol. Pol. 35, 175-190 (1986) -> ECOTGG1 M54893 Actinomycetologica 5, 14-17 (1991) -> STMARGG D00799 Adv. Biophys. 21, 115-133 (1986) -> R10REP M26840 Adv. Biophys. 21, 175-192 (1986) -> ECONUSAA M26839 Adv. Enzyme Regul. 21, 225-237 (1983) -> ECOPURFA M26893 Adv. Exp. Med. Biol. 195, 239-246 (1986) -> ECOAPT M14040 Agric. Biol. Chem. 50, 2155-2158 (1986) -> ECONANA M20207 Agric. Biol. Chem. 50, 2771-2778 (1986) -> BRLAM330 D00038 Agric. Biol. Chem. 51, 2019-2022 (1987) -> BACCGT D00129 Agric. Biol. Chem. 51, 2641-2648 (1987) -> STRSAGP D00219 Agric. Biol. Chem. 51, 2807-2809 (1987) -> BACPGECR M35503 Agric. Biol. Chem. 51, 3133-3135 (1987) -> BACXYLAP D00312 Agric. Biol. Chem. 51, 455-463 (1987) -> BACHDCRY D00117 Agric. Biol. Chem. 51, 953-955 (1987) -> BACXYNAA D00087 Agric. Biol. Chem. 52, 1565-1573 (1988) -> BACIP135 D00348 Agric. Biol. Chem. 52, 1785-1789 (1988) -> BACTMR D00343 Agric. Biol. Chem. 52, 2243-2246 (1988) -> PSEGI D00342 Agric. Biol. Chem. 52, 399-406 (1988) -> BACAMYEB M35517 Agric. Biol. Chem. 52, 479-487 (1988) -> ECAPALI D00217 ------------------------------------------------------------------------------ Table 7. Part of the contents in the file 'ddbjbct.key'. For the locus and accession number respectively given on the right to the arrow, the corresponding key words are listed on the left. ------------------------------------------------------------------------------ A.aceti acetic acid resistance protein (aarA) gene, complete cds. -> ABCAARAA M34830 acetic acid resistance protein. -> ABCAARAA M34830 Cloning of genes responsible for acetic acid resistance in acetobacter aceti -> ABCAARAA M34830 A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and cytochrome c genes. -> ABCADHCC D00635 alcohol dehydrogenase; cytochrome c. -> ABCADHCC D00635 Cloning and sequencing of the gene cluster encoding two subunits of membrane- bound alcohol dehydrogenase from Acetobacter polyoxogenes -> ABCADHCC D00635 These data kindly submitted in computer readable form by: Toshimi Tamaki Nakano Central Biochemical Institute 2-6 Nakamura-cho Handa-shi, Aichi-ken 475 Japan Phone: 0569-21-3331 Fax: 0569-23-8486 -> ABCADHCC D00635 A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, complete cds and flanks. -> ABCALDH D00521 aldehyde dehydrogenase gene; ethanol oxidation; membrane-bound enzyme. -> ABCALDH D00521 Nucleotide sequence of the membrane-bound aldehyde dehydrogenase gene from Acetobacter polyoxogenes -> ABCALDH D00521 ------------------------------------------------------------------------------ Table 8. Part of the contents in the file 'ddbjbct.org'. For the locus and accession number respectively given on the right to the arrow, the corresponding taxonomic names are listed on the left. They are arranged in the alphabetical order of the species names. ------------------------------------------------------------------------------ A. nidulans 6301 DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRUBPS X00019 A. nidulans DNA, clone pAN4. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGGX X00343 A. nidulans DNA. Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> ANIRGG X00512 A. polyoxogenes genomic DNA. Acetobacter polyoxogenes Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. - > ABCADHCC D00635 A. quadruplicatum (strain PR-6) DNA, clone pAQPR1. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUPCAB K02660 A. quadruplicatum (strain PR6) DNA. Agmenellum quadruplicatum Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. -> AQUCPCAB K02659 A. vinelandii DNA. Azotobacter vinelandii Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> AVINIFUSV M17349 A.aceti (strain 10-8) DNA, clone pAR1611. Acetobacter aceti Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic rods and cocci; Azotobacteraceae. -> ABCAARAA M34830 A.actinomycetemcomitans (strain JP2) DNA, clone lambda-OP8. Actinobacillus actinomycetemcomitans Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Pasteurellaceae. -> ACNLKTXN M27399 A.anitratum DNA, clone pLJD1. Acinetobacter anitratum Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Neisseriaceae. -> ACCCITSYN M33037 ------------------------------------------------------------------------------ Table 9. Part of the short directory file in DDBJ style in the file 'ddbjbct.sdr'. The short directory file contains brief descriptions of all of the sequence entries contained in the DDBJ style. ------------------------------------------------------------------------------ ABCAARAA A.aceti acetic acid resistance protein (aarA) gene, complete 1624bp ABCADHCC A. polyoxogenes alcohol dehydrogenase (EC 1.1.99.8) and 4230bp ABCALDH A.polyoxogenes membrane-bound aldehyde dehydrogenase gene, 2683bp ABCBCSABCD A.xylinum bcs A, B, C and D genes, complete cds's. 9540bp ABCCELA Acetobacter xylinum UDP pyrophosphorylase (celA) gene, 1165bp ABCCELSYN A. xylinum gene for cellulose biosynthesis 5363bp ABCIS1380 A.pasteurianus insertion sequence IS1380. 1665bp ACAADH1 Acetobacter aceti(K6033) alcohol dehydrogenase subunit 2467bp ACCAAC2 Acinetobacter baumannii aminoglycoside acetyltransferase 1123bp ACCACEAA A.baumannii chloramphenicol acetyltransferase (cat) gene, 1874bp ACCAPHA6 Acinetobacter baumannii aphA-6 gene. 1170bp ACCBENABCA A.calcoaceticus BenA, BenB, BenC, BenD, and BenE proteins 15922bp ACCCAT Acinetobacter calcoaceticus cat operon. 15922bp ACCCATAM A.calcoaceticus catA and catM genes, encoding catechol 1, 5537bp ACCCHMO Acinetobacter sp. cyclohexanone monooxygenase gene, complete 2128bp ACCCITSYN A.anitratum citrate synthase gene, complete cds. 1895bp ------------------------------------------------------------------------------ In addition to the 9 tables the four following index files are included in this release. These files were prepared for BCT, EST, GSS, HTC, HTG, HUM, INV, MAM, PAT, PHG, PLN, PRI, ROD, STS, SYN, UNA, VRL, VRT divisions. Accession number index file Keyword phrase index file Journal citation index file Gene name index file A brief description is given for each file in the following. Table 10. Part of the accession number index file in the 'ddbjacc.idx'. The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00100 PSEASPAA BCT D00100 D00101 RABNP450R MAM D00101 D00102 HUMLTX HUM D00102 D00103 AFARRN5SA BCT D00103 AFRRN5SA BCT X05517 D00104 AFARRN5SB BCT D00104 AFRRN5SB BCT X05518 D00105 AFARRN5S BCT D00105 ASRRN5S BCT X05524 D00106 ACH5SRR BCT D00106 AXRRN5S BCT X05522 AXRRN5SA BCT X05523 D00107 ACH5SRRX BCT D00107 ACRRN5S BCT X05521 ------------------------------------------------------------------------------ Table 11. Part of the keyword phrase index file in the 'ddbjkey.idx'. Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ A CHANNEL DROCHA INV M17155 A COMPONENT SQLCVEA VRL M38183 A LOCUS GORGOGOA3 PRI X54375 GORGOGOA4 PRI X54376 A LOCUS ALLELE GORA0101 PRI X60258 GORA0201 PRI X60259 GORA0401 PRI X60257 GORA0501 PRI X60256 A MULTI-GENE FAMILY RICGLUTE PLN D00584 A PROTEIN MS2AAR PHG M25187 ST1APCS PHG M25396 A SEQUENCE HS5TOA30 VRL D00148 HS5TOA31 VRL D00147 ------------------------------------------------------------------------------ Table 12. Part of the journal citation index file in 'ddbjjou.idx'. The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ ACTA BIOCHIM. BIOPHYS. SIN. 23, 246-253 (1992) HUMPLASINS HUM M98056 ACTA BIOCHIM. BIOPHYS. SIN. 28, 233-239(1996) TKTII PLN X82230 ACTA BIOCHIM. POL. 24, 301-318 (1977) LUPTRFJ PLN K00345 LUPTRFN PLN K00346 ACTA BIOCHIM. POL. 26, 369-381(1979) HVTRNPHE PLN X02683 ACTA BIOCHIM. POL. 29, 143-149 (1982) EMEMTA PLN M32572 EMEMTB PLN M32573 EMEMTC PLN M32574 EMEMTD PLN M32575 EMEMTE PLN M32576 ACTA BIOCHIM. POL. 34, 21-27 (1987) LUPNOSP PLN M32571 ------------------------------------------------------------------------------ Table 13. Part of the gene name index file in 'ddbjgen.idx'. This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ AACC8 STMAACC8 BCT M55426 AACC9 MPUAACC9 BCT M55427 AACT HUMA1ACM PRI K01500 HUMA1ACMA PRI X00947 HUMA1ACMB PRI M18035 HUMAACT1 PRI M18906 HUMAACT2 PRI M22533 HUMAACTA PRI J05176 AAD INTINTORF BCT L06418 LMOMO229D BCT X17478 AAD A1 ENTAAC3VI BCT M88012 AAD9 ENEAAD9A BCT M69221 AADA LMOMO229A BCT X17479 S52249 BCT S52249 SYNAADA SYN M60473 TRNTAAB BCT M55547 TRNTN21CAS BCT M86913 ------------------------------------------------------------------------------ The files in this release are arranged in the following order with non-labeled format. file name number of entries number of bases file size ------------------------------------------------------------------------------ ddbjrel.txt (DDBJ release note) 72707 ddbjacc.idx (Accession number index file) 1478543803 ddbjgen.idx (Gene name index file) 63746360 ddbjjou.idx (Journal citation index file) 1620239416 ddbjkey.idx (Keyword phrase index file) 1398767053 ddbjbct1.seq 32893 119620877 299026832 ddbjbct2.seq 6934 129979469 299006317 ddbjbct3.seq 12286 130634772 299003005 ddbjbct4.seq 76748 102254876 299002574 ddbjbct5.seq 29786 120026677 299001187 ddbjbct6.seq 84135 101346445 302995819 ddbjbct7.seq 446 134700078 300046978 ddbjbct8.seq 23148 126537517 299112910 ddbjbct9.seq 17744 34478998 91576461 ddbjcon.seq 391916 0 697317247 ddbjest1.seq 90092 33919201 299000961 ddbjest2.seq 94909 38175564 299002718 ddbjest3.seq 95456 37053779 299001245 ddbjest4.seq 89429 28106820 299000560 ddbjest5.seq 94290 36413936 299001554 ddbjest6.seq 98428 39008125 298999953 ddbjest7.seq 98535 38046231 299001602 ddbjest8.seq 97454 37752833 299001000 ddbjest9.seq 98170 38757880 299001878 ddbjest10.seq 99182 38786094 299001369 ddbjest11.seq 97724 39083875 299000613 ddbjest12.seq 96841 43258842 299002972 ddbjest13.seq 105370 42395704 299001173 ddbjest14.seq 101784 41082018 299001955 ddbjest15.seq 97454 40872157 299000929 ddbjest16.seq 94350 42140007 299001103 ddbjest17.seq 96998 39065604 299003309 ddbjest18.seq 97819 42613945 299003076 ddbjest19.seq 96058 41975972 299002475 ddbjest20.seq 95124 38938216 299000184 ddbjest21.seq 107543 51915961 299000126 ddbjest22.seq 130224 55867619 299000688 ddbjest23.seq 117915 62104219 299002373 ddbjest24.seq 88141 71000748 299000007 ddbjest25.seq 113506 67572738 299000321 ddbjest26.seq 121231 61604971 299002217 ddbjest27.seq 127305 60379117 299001978 ddbjest28.seq 122789 63201840 299000336 ddbjest29.seq 114059 46515632 299001766 ddbjest30.seq 92151 24756719 299002633 ddbjest31.seq 97705 28137368 299002971 ddbjest32.seq 60706 16803554 299003569 ddbjest33.seq 60593 16748076 299000410 ddbjest34.seq 73996 26475028 299000507 ddbjest35.seq 122350 53902591 299001240 ddbjest36.seq 109785 55825876 299001837 ddbjest37.seq 96242 44080434 299001257 ddbjest38.seq 135111 70265417 299001665 ddbjest39.seq 107335 49459568 299001265 ddbjest40.seq 87579 37992330 299001434 ddbjest41.seq 93241 40923282 299001719 ddbjest42.seq 94892 39996356 299001188 ddbjest43.seq 101494 39483808 299002062 ddbjest44.seq 87461 36087802 299002926 ddbjest45.seq 90061 39821732 299000967 ddbjest46.seq 98203 45172695 299000660 ddbjest47.seq 93451 37398287 299000196 ddbjest48.seq 100296 37642351 299002880 ddbjest49.seq 88359 36998782 299001094 ddbjest50.seq 60947 17020515 299001448 ddbjest51.seq 59993 18637113 299004603 ddbjest52.seq 60603 18576943 299001484 ddbjest53.seq 60488 19035206 299000448 ddbjest54.seq 60283 18362286 299002619 ddbjest55.seq 60603 18596387 299003752 ddbjest56.seq 61936 18135722 299003509 ddbjest57.seq 61610 19391411 299001756 ddbjest58.seq 62055 19153673 299002251 ddbjest59.seq 60122 26962436 299003247 ddbjest60.seq 56184 29964937 299003240 ddbjest61.seq 54963 22587874 299001748 ddbjest62.seq 53846 23976952 299005482 ddbjest63.seq 54447 23221817 299004686 ddbjest64.seq 85197 37012209 299002120 ddbjest65.seq 95131 35754852 298999965 ddbjest66.seq 94714 45928865 299000582 ddbjest67.seq 99293 54687975 299002363 ddbjest68.seq 98074 53769781 299002415 ddbjest69.seq 97395 51053609 299000343 ddbjest70.seq 90722 47441378 299001639 ddbjest71.seq 96525 48537813 299000191 ddbjest72.seq 92298 45049560 299000788 ddbjest73.seq 96177 57427886 299000050 ddbjest74.seq 86968 48352340 299002375 ddbjest75.seq 93758 49998969 299001176 ddbjest76.seq 93016 57464472 299002752 ddbjest77.seq 91108 58360075 299002068 ddbjest78.seq 91786 40641704 299000543 ddbjest79.seq 89434 41502062 299001591 ddbjest80.seq 84967 48829910 299001665 ddbjest81.seq 89106 51865944 299000210 ddbjest82.seq 94502 43136799 299001627 ddbjest83.seq 95329 43762472 299001298 ddbjest84.seq 96144 38061401 299000512 ddbjest85.seq 92361 46439520 299001689 ddbjest86.seq 92140 49619744 299000181 ddbjest87.seq 100290 61528735 299000885 ddbjest88.seq 91175 58367424 298999991 ddbjest89.seq 88405 55050524 299001196 ddbjest90.seq 91407 58664342 299002406 ddbjest91.seq 95105 57487495 298999986 ddbjest92.seq 95315 58489645 299003285 ddbjest93.seq 95516 61907352 299003242 ddbjest94.seq 93939 61125817 299001560 ddbjest95.seq 99653 42859511 299001766 ddbjest96.seq 101019 50460932 299000497 ddbjest97.seq 99598 55263063 299001609 ddbjest98.seq 85652 47357873 299001877 ddbjest99.seq 90175 47049620 299002242 ddbjest100.seq 86720 49180850 299000534 ddbjest101.seq 87961 51759350 299001455 ddbjest102.seq 93128 57686866 299001573 ddbjest103.seq 87737 50469330 299001168 ddbjest104.seq 92655 53145301 299000764 ddbjest105.seq 89817 55093197 299001541 ddbjest106.seq 85240 48052276 299001503 ddbjest107.seq 122222 68106881 299002090 ddbjest108.seq 88941 47030659 299000321 ddbjest109.seq 128715 68621720 299001296 ddbjest110.seq 126680 68500542 299001268 ddbjest111.seq 104903 61448679 299001153 ddbjest112.seq 110313 62307177 299000377 ddbjest113.seq 115914 71412173 299003261 ddbjest114.seq 88559 50865657 299002101 ddbjest115.seq 84158 38804219 299004781 ddbjest116.seq 71076 33058953 299000125 ddbjest117.seq 81482 40367872 299002433 ddbjest118.seq 78025 41703698 298999935 ddbjest119.seq 97669 63875286 299003565 ddbjest120.seq 88782 58785705 299000029 ddbjest121.seq 91865 51725902 299002263 ddbjest122.seq 78998 39435215 299000362 ddbjest123.seq 85724 49436435 299002995 ddbjest124.seq 82541 54915594 299000757 ddbjest125.seq 95707 52543195 299000341 ddbjest126.seq 112659 53942962 299000871 ddbjest127.seq 111568 66005432 299000553 ddbjest128.seq 119766 69223679 299001602 ddbjest129.seq 97665 50726512 299001947 ddbjest130.seq 88149 36476474 299001628 ddbjest131.seq 122870 62530784 299001055 ddbjest132.seq 82365 55582507 299001360 ddbjest133.seq 89889 47261099 299000651 ddbjest134.seq 81390 52697052 299003271 ddbjest135.seq 89973 38121120 299001965 ddbjest136.seq 95560 54247689 299003265 ddbjest137.seq 100032 49693616 299001682 ddbjest138.seq 81968 41854887 299000318 ddbjest139.seq 89300 66658316 299000291 ddbjest140.seq 87562 50249990 299000842 ddbjest141.seq 87431 54217032 299001396 ddbjest142.seq 90069 63249375 299001575 ddbjest143.seq 90585 47256261 299001821 ddbjest144.seq 89691 68297282 299002072 ddbjest145.seq 85620 65687402 299002065 ddbjest146.seq 82009 60127306 299000098 ddbjest147.seq 82580 59951229 299002455 ddbjest148.seq 83782 58362629 299002728 ddbjest149.seq 83117 58238708 299002711 ddbjest150.seq 81686 47468912 299003044 ddbjest151.seq 81335 47499138 299001736 ddbjest152.seq 101651 58787830 299003071 ddbjest153.seq 101233 65429772 299000602 ddbjest154.seq 115659 68576702 299001132 ddbjest155.seq 135247 82258002 299001406 ddbjest156.seq 135590 80745326 299000081 ddbjest157.seq 128408 82659270 299000255 ddbjest158.seq 132230 65965488 299002320 ddbjest159.seq 81287 44574473 299001818 ddbjest160.seq 89843 74200523 299002870 ddbjest161.seq 99190 71248243 299002736 ddbjest162.seq 96715 48572953 299001758 ddbjest163.seq 108379 75441500 299002360 ddbjest164.seq 81839 54881493 299002607 ddbjest165.seq 60137 22844893 299003525 ddbjest166.seq 56204 20551468 299003663 ddbjest167.seq 58430 20815002 299001550 ddbjest168.seq 56561 20583580 299002322 ddbjest169.seq 56240 23743186 299005009 ddbjest170.seq 57219 20790476 299004251 ddbjest171.seq 58603 21734775 298999947 ddbjest172.seq 58280 23504835 299003077 ddbjest173.seq 55416 23988788 299003560 ddbjest174.seq 55802 23354810 299001990 ddbjest175.seq 56328 23161911 299003676 ddbjest176.seq 56299 22016965 299004657 ddbjest177.seq 54650 32424844 299003417 ddbjest178.seq 64495 31544365 299001560 ddbjest179.seq 125701 51130492 299001888 ddbjest180.seq 92767 57930276 299000741 ddbjest181.seq 88252 56994061 299002124 ddbjest182.seq 88738 55802220 299000762 ddbjest183.seq 91520 53327490 299002176 ddbjest184.seq 85122 57949509 299000836 ddbjest185.seq 83093 46420357 299003989 ddbjest186.seq 109367 53011367 299000519 ddbjest187.seq 114176 57082587 299001194 ddbjest188.seq 88590 47597637 299000219 ddbjest189.seq 85963 41431155 299002421 ddbjest190.seq 91692 52460213 299000282 ddbjest191.seq 90310 42815997 299001750 ddbjest192.seq 94927 59600244 299003124 ddbjest193.seq 83285 46898023 299003125 ddbjest194.seq 94664 47293451 299000028 ddbjest195.seq 107335 60497631 299001620 ddbjest196.seq 101948 71273531 299000497 ddbjest197.seq 126700 65553535 299001609 ddbjest198.seq 111734 56118772 299000163 ddbjest199.seq 92837 57831429 299001932 ddbjest200.seq 95852 47768406 299001945 ddbjest201.seq 96670 42578304 299001975 ddbjest202.seq 88352 49649434 299002671 ddbjest203.seq 76948 48607753 299003119 ddbjest204.seq 91712 54502478 299001110 ddbjest205.seq 81936 53973367 299001867 ddbjest206.seq 99841 50292546 299000643 ddbjest207.seq 100379 52240148 299002403 ddbjest208.seq 100879 63339983 299001670 ddbjest209.seq 143749 65311472 299001911 ddbjest210.seq 122554 55849459 299004264 ddbjest211.seq 88718 46425887 299000693 ddbjest212.seq 91075 59403876 299000841 ddbjest213.seq 99645 49172750 299000507 ddbjest214.seq 89477 55215453 299001246 ddbjest215.seq 82382 44480542 299003133 ddbjest216.seq 71316 41599085 299001383 ddbjest217.seq 89507 62587620 299003571 ddbjest218.seq 90717 55237053 299003351 ddbjest219.seq 86689 50149978 299000915 ddbjest220.seq 90877 54982285 299003058 ddbjest221.seq 93975 58818170 299002629 ddbjest222.seq 84032 68866702 298999956 ddbjest223.seq 78926 59131524 299001127 ddbjest224.seq 80658 44099156 299002598 ddbjest225.seq 94619 64580862 299000021 ddbjest226.seq 93688 46590432 299001034 ddbjest227.seq 86817 48849855 299003527 ddbjest228.seq 80127 40784343 299002526 ddbjest229.seq 81459 51994309 299000735 ddbjest230.seq 104812 54801116 299002435 ddbjest231.seq 87830 53274906 299001712 ddbjest232.seq 86008 50292564 299003039 ddbjest233.seq 94979 60635580 299001540 ddbjest234.seq 111086 64407492 299000255 ddbjest235.seq 100386 55659500 299001321 ddbjest236.seq 78160 47029733 299000347 ddbjest237.seq 95898 49390263 299002819 ddbjest238.seq 62010 31834707 299001132 ddbjest239.seq 85488 48356797 299003317 ddbjest240.seq 118511 59825942 299000843 ddbjest241.seq 96603 61926566 299000513 ddbjest242.seq 97471 63651831 299000390 ddbjest243.seq 82784 46859905 299001100 ddbjest244.seq 100482 46718484 299001581 ddbjest245.seq 87572 50700566 299004305 ddbjest246.seq 80469 47469264 299004118 ddbjest247.seq 106640 64599915 299002012 ddbjest248.seq 107331 57644870 299002276 ddbjest249.seq 100679 54815919 299002917 ddbjest250.seq 70530 44140778 299007145 ddbjest251.seq 58430 32392140 299001133 ddbjest252.seq 103740 57351140 299001884 ddbjest253.seq 98993 58088934 299003642 ddbjest254.seq 87936 49125807 299003749 ddbjest255.seq 80611 51016407 298999949 ddbjest256.seq 80864 47049802 299003604 ddbjest257.seq 91438 40194575 299001622 ddbjest258.seq 100241 38466996 299001776 ddbjest259.seq 87513 51516487 299000154 ddbjest260.seq 80232 42995997 299001121 ddbjest261.seq 89042 56621455 299003055 ddbjest262.seq 94772 52106486 299002003 ddbjest263.seq 106676 35349435 299002462 ddbjest264.seq 92110 34016709 299001903 ddbjest265.seq 94452 33580834 299002371 ddbjest266.seq 100783 34881365 299001659 ddbjest267.seq 92908 36034769 299001505 ddbjest268.seq 77274 29461855 244781174 ddbjgss1.seq 104829 76382852 299001666 ddbjgss2.seq 101560 70463438 299002576 ddbjgss3.seq 108429 61052790 299001987 ddbjgss4.seq 85352 74218048 299002745 ddbjgss5.seq 87025 71029624 299002588 ddbjgss6.seq 87353 70436561 299002218 ddbjgss7.seq 93428 78645340 299000923 ddbjgss8.seq 103113 69579259 299003592 ddbjgss9.seq 97436 74922148 299001144 ddbjgss10.seq 81944 68875585 299003077 ddbjgss11.seq 79794 73351105 299001136 ddbjgss12.seq 80485 60541535 299000060 ddbjgss13.seq 103356 41715513 299001820 ddbjgss14.seq 118725 49702566 299000913 ddbjgss15.seq 113122 52833663 299000763 ddbjgss16.seq 105653 53487338 299003847 ddbjgss17.seq 101010 52544540 298999989 ddbjgss18.seq 97942 49069118 299000222 ddbjgss19.seq 99192 50562225 299001432 ddbjgss20.seq 94609 47735578 299002455 ddbjgss21.seq 96681 54373960 299002986 ddbjgss22.seq 90372 48314678 299002278 ddbjgss23.seq 94724 48309631 298999922 ddbjgss24.seq 91133 59544418 299000299 ddbjgss25.seq 92768 45423239 299000799 ddbjgss26.seq 96066 53933019 299000600 ddbjgss27.seq 83791 39083799 299003720 ddbjgss28.seq 73649 37810184 299003049 ddbjgss29.seq 75263 33532359 299002097 ddbjgss30.seq 82957 49349305 299001579 ddbjgss31.seq 76681 34890442 299000775 ddbjgss32.seq 86471 52003353 299002385 ddbjgss33.seq 82175 32973041 299003377 ddbjgss34.seq 78673 37600559 299000664 ddbjgss35.seq 86051 42928268 299000785 ddbjgss36.seq 91063 48969725 299002443 ddbjgss37.seq 91618 59403097 299002656 ddbjgss38.seq 100725 49669994 299001445 ddbjgss39.seq 98030 52191960 299002450 ddbjgss40.seq 105681 62400828 299001779 ddbjgss41.seq 119488 79338165 299001997 ddbjgss42.seq 115018 63713668 299001945 ddbjgss43.seq 109385 54250733 299000115 ddbjgss44.seq 109824 44071776 299001859 ddbjgss45.seq 108225 72322535 299000491 ddbjgss46.seq 119921 72793273 299000554 ddbjgss47.seq 109048 57829771 299000142 ddbjgss48.seq 98242 68963775 299000284 ddbjgss49.seq 92930 61637962 299002490 ddbjgss50.seq 98628 58359020 299003240 ddbjgss51.seq 100798 55130581 299000839 ddbjgss52.seq 115541 81206220 299001363 ddbjgss53.seq 105244 75459987 299001439 ddbjgss54.seq 118121 76258327 299000211 ddbjgss55.seq 106021 65557303 299002724 ddbjgss56.seq 93669 49125292 299000427 ddbjgss57.seq 117363 66253816 299000114 ddbjgss58.seq 111310 56871500 299001191 ddbjgss59.seq 107612 73630176 299001918 ddbjgss60.seq 92361 100869135 299001574 ddbjgss61.seq 109701 89037927 299001531 ddbjgss62.seq 101895 67617778 299003183 ddbjgss63.seq 82738 57852262 299003167 ddbjgss64.seq 109808 81605746 299001775 ddbjgss65.seq 109805 70542555 299001096 ddbjgss66.seq 112105 72807895 299000767 ddbjgss67.seq 119481 76343215 299000896 ddbjgss68.seq 128352 68721769 299001304 ddbjgss69.seq 128101 69049624 299001736 ddbjgss70.seq 129703 66959994 299000945 ddbjgss71.seq 130191 66325065 299001948 ddbjgss72.seq 129882 66725526 299000090 ddbjgss73.seq 129280 67512222 299001773 ddbjgss74.seq 118632 81746124 299000249 ddbjgss75.seq 113893 89676833 299001093 ddbjgss76.seq 112017 88563507 299001224 ddbjgss77.seq 112781 84401453 299000967 ddbjgss78.seq 118028 55333510 299000228 ddbjgss79.seq 121228 37046669 299001118 ddbjgss80.seq 109409 64699335 299000618 ddbjgss81.seq 105523 58643942 299002032 ddbjgss82.seq 111342 78099786 299000938 ddbjgss83.seq 99495 91073435 299001660 ddbjgss84.seq 101136 85946484 299002759 ddbjgss85.seq 113163 67334245 299000905 ddbjgss86.seq 97876 53886854 299002706 ddbjgss87.seq 98522 78188480 299001113 ddbjgss88.seq 108015 63954353 299002498 ddbjgss89.seq 106924 76280797 299000454 ddbjgss90.seq 107859 73351525 299002017 ddbjgss91.seq 112053 69294634 299000034 ddbjgss92.seq 121817 91605586 299000194 ddbjgss93.seq 141754 87560176 299001292 ddbjgss94.seq 131662 81904440 299002393 ddbjgss95.seq 103428 60985783 299001684 ddbjgss96.seq 108340 68293389 299000827 ddbjgss97.seq 98078 54341682 299000440 ddbjgss98.seq 95435 59234324 299001109 ddbjgss99.seq 95627 58880363 299002110 ddbjgss100.seq 95614 58665085 299000054 ddbjgss101.seq 96867 60275807 299000433 ddbjgss102.seq 108035 73291820 299000130 ddbjgss103.seq 105279 69305769 299000711 ddbjgss104.seq 68608 42465481 190302206 ddbjhtc1.seq 37989 68272644 299000712 ddbjhtc2.seq 53835 61199621 299001583 ddbjhtc3.seq 91636 79078941 299001275 ddbjhtc4.seq 86703 103971285 299000460 ddbjhtc5.seq 99518 108961265 288604007 ddbjhtg1.seq 1583 227595888 299076232 ddbjhtg2.seq 3382 224461599 299111407 ddbjhtg3.seq 3097 226059332 299069657 ddbjhtg4.seq 1865 225911859 299061075 ddbjhtg5.seq 1544 224697095 299164066 ddbjhtg6.seq 1517 224704265 299093049 ddbjhtg7.seq 1557 224447243 299041825 ddbjhtg8.seq 1353 227799273 299060099 ddbjhtg9.seq 1762 223339544 299261267 ddbjhtg10.seq 1147 229620730 299065655 ddbjhtg11.seq 898 230110302 299011885 ddbjhtg12.seq 885 230107759 299090859 ddbjhtg13.seq 969 230112755 299295406 ddbjhtg14.seq 922 230071766 299037332 ddbjhtg15.seq 2106 217976047 299053837 ddbjhtg16.seq 1248 227511222 299071589 ddbjhtg17.seq 1371 226175997 299061468 ddbjhtg18.seq 978 229553359 299121546 ddbjhtg19.seq 1070 229121828 299348435 ddbjhtg20.seq 1095 229127894 299287694 ddbjhtg21.seq 1003 229476108 299234750 ddbjhtg22.seq 931 230014884 299172882 ddbjhtg23.seq 1032 229469128 299188494 ddbjhtg24.seq 1055 229321055 299017171 ddbjhtg25.seq 1190 228311723 299060442 ddbjhtg26.seq 1118 228856535 299187783 ddbjhtg27.seq 1147 228696695 299248946 ddbjhtg28.seq 1055 229415651 299070387 ddbjhtg29.seq 1154 228394253 299062301 ddbjhtg30.seq 1081 229174922 299255410 ddbjhtg31.seq 1014 229541641 299020072 ddbjhtg32.seq 992 229561708 299014656 ddbjhtg33.seq 1130 228457128 299004632 ddbjhtg34.seq 1131 229378441 299345913 ddbjhtg35.seq 1130 228779447 299120092 ddbjhtg36.seq 1285 227695153 299144487 ddbjhtg37.seq 1373 226613310 299048397 ddbjhtg38.seq 1574 226574541 299077589 ddbjhtg39.seq 1378 227911928 299016813 ddbjhtg40.seq 1327 227919811 299004925 ddbjhtg41.seq 1453 228758500 299028458 ddbjhtg42.seq 1464 229520893 299004653 ddbjhtg43.seq 1493 229436165 299157280 ddbjhtg44.seq 1405 229075158 299050625 ddbjhtg45.seq 1709 227244975 299109739 ddbjhtg46.seq 1315 229982299 299073717 ddbjhtg47.seq 1384 228521334 299003217 ddbjhtg48.seq 1191 230555780 299135706 ddbjhtg49.seq 1257 230949572 299111675 ddbjhtg50.seq 1245 231117462 299061529 ddbjhtg51.seq 1290 222559839 288484135 ddbjhum1.seq 13663 192017671 299033807 ddbjhum2.seq 1610 211957853 299135789 ddbjhum3.seq 1579 217731772 299213667 ddbjhum4.seq 1350 206444257 299024960 ddbjhum5.seq 1444 213270716 299083078 ddbjhum6.seq 1464 210738950 299042913 ddbjhum7.seq 1550 204159956 299206184 ddbjhum8.seq 1625 213692272 299097401 ddbjhum9.seq 1511 208259100 299198021 ddbjhum10.seq 1787 209456105 299192566 ddbjhum11.seq 1949 213025492 299002948 ddbjhum12.seq 32574 170619566 299073279 ddbjhum13.seq 69677 103137398 299002817 ddbjhum14.seq 18101 171302156 299048648 ddbjhum15.seq 3033 218764954 299183298 ddbjhum16.seq 2038 222921385 299090121 ddbjhum17.seq 2501 220568075 299076517 ddbjhum18.seq 4145 217763250 299014861 ddbjhum19.seq 6715 215104227 299024084 ddbjhum20.seq 49654 95348425 299002575 ddbjhum21.seq 48107 125328515 299001156 ddbjhum22.seq 45031 83607202 198107527 ddbjinv1.seq 14068 204138282 299000391 ddbjinv2.seq 5511 184977527 299000466 ddbjinv3.seq 87702 92130208 299019793 ddbjinv4.seq 70216 104715732 299000203 ddbjinv5.seq 70818 106499027 299004641 ddbjinv6.seq 4428 41186947 75584814 ddbjmam.seq 66390 109362831 270247742 ddbjpat1.seq 255273 89006233 299000330 ddbjpat2.seq 217408 107879089 298999986 ddbjpat3.seq 173987 111190650 299000280 ddbjpat4.seq 142555 120870838 299009646 ddbjpat5.seq 161575 107491784 299000669 ddbjpat6.seq 154572 109372949 299001224 ddbjpat7.seq 175021 92521129 299000874 ddbjpat8.seq 141364 65270223 299001564 ddbjpat9.seq 124062 67123904 299001399 ddbjpat10.seq 144887 63805878 300527951 ddbjpat11.seq 158446 74488180 299001020 ddbjpat12.seq 169552 69804439 299001127 ddbjpat13.seq 142146 123235762 299001613 ddbjpat14.seq 155924 112945936 299004418 ddbjpat15.seq 137323 115062256 299004712 ddbjpat16.seq 44922 10937739 46237380 ddbjphg.seq 2767 13409931 34056236 ddbjpln1.seq 29314 160195360 299132518 ddbjpln2.seq 1776 213104955 299392820 ddbjpln3.seq 80901 104514119 298999957 ddbjpln4.seq 88770 86812859 299002441 ddbjpln5.seq 51993 58466712 299002743 ddbjpln6.seq 17328 158473523 299042948 ddbjpln7.seq 1544 202980667 299121015 ddbjpln8.seq 42401 131390298 299000626 ddbjpln9.seq 93000 90633709 299001081 ddbjpln10.seq 45902 129350239 299006962 ddbjpln11.seq 35376 67303505 173959928 ddbjpri.seq 31663 251540883 384754788 ddbjrod1.seq 8589 205994665 299102611 ddbjrod2.seq 1087 208219686 299217141 ddbjrod3.seq 1083 209520995 299258802 ddbjrod4.seq 1159 214605883 299135231 ddbjrod5.seq 1174 216063365 299072505 ddbjrod6.seq 1207 219028405 299031527 ddbjrod7.seq 1215 220842674 299078834 ddbjrod8.seq 34831 169865105 299075993 ddbjrod9.seq 1399 229963238 299083834 ddbjrod10.seq 1483 231724330 299036975 ddbjrod11.seq 31707 155581483 299005913 ddbjrod12.seq 34882 141754401 299000651 ddbjrod13.seq 18042 22195617 67494567 ddbjsts1.seq 104562 57595395 299001966 ddbjsts2.seq 85829 34917656 299001580 ddbjsts3.seq 117340 44264923 299000485 ddbjsts4.seq 72636 31758452 205156742 ddbjsyn.seq 16055 23889562 70390892 ddbjtpa.seq 4506 15076221 33332175 ddbjuna.seq 1409 629862 3434638 ddbjvrl1.seq 86475 76849200 299010898 ddbjvrl2.seq 86497 77549323 299062561 ddbjvrl3.seq 84566 84083549 299002258 ddbjvrl4.seq 4629 2445701 12345100 ddbjvrt1.seq 76611 111913281 299002929 ddbjvrt2.seq 26143 187479373 299002891 ddbjvrt3.seq 52004 104934985 299094651 ddbjvrt4.seq 1460 231416292 299098949 ddbjvrt5.seq 7809 220748229 299003292 ddbjvrt6.seq 37659 85447486 185147535 ---------------------------------------------------------------------- EST: expressed sequence tag CON: Contig sequences GSS: genome survey sequence HTC: high throughput cDNA HTG: high throughput genome sequence STS: sequence tagged site TPA: third party annotation