DNA Data Bank of Japan DNA Database Release 63.0, Sep. 2005, including 47,741,593 entries, 52,246,110,341 bases ------------------------------------------------------------------------------- Table of contents ------------------------------------------------------------------------------- 1. Introduction 1.1. Announcement for changes in the present release 1.2. Announcement for the forthcoming changes 2. DDBJ flat file format 2.1. LOCUS line 2.2. DEFINITION line 2.3. ACCESSION line 2.4. VERSION line 2.5. KEYWORDS line 2.6. SOURCE line 2.7. REFERENCE line 2.8. COMMENT line 2.9. FEATURES line 2.10. BASE COUNT line 2.11. ORIGIN line 3. Dataset categories 3.1. Division categories 3.2. TPA separated from primary dataset 3.3. Notice for patented data 4. DDBJ staff 5. Acknowledgment 6. File Contents 6.1. File categories 6.2. File types 7. Sample of the contents in each file 7.1. Part of the contents in the file 'ddbjbct1.seq' 7.2. Part of the contents in the file 'ddbjbct1.acc' 7.3. Part of the contents in the file 'ddbjbct1.aut' 7.4. Part of the short directory in DDBJ style in the file 'ddbjbct1.dir' 7.5. Part of the contents in the file 'ddbjbct1.idx' 7.6. Part of the contents in the file 'ddbjbct1.jou' 7.7. Part of the contents in the file 'ddbjbct1.key' 7.8. Part of the contents in the file 'ddbjbct1.org' 7.9. Part of the short directory file in DDBJ style in the file 7.10. Part of the accession number index file in the 'ddbjacc.idx' 7.11. Part of the keyword phrase index file in the 'ddbjkey.idx' 7.12. Part of the journal citation index file in 'ddbjjou.idx' 7.13. Part of the gene name index file in 'ddbjgen.idx' 8. Release history 9. File list ------------------------------------------------------------------------------- 1. Introduction This database contains nucleotide sequence data for any organism, not only those with DNA genomes but also those with RNA genomes. This database may be copied and redistributed without permission on the condition that all the statements in this release note are reproduced in each copy. See also '3.3. Notice for patented data' below. The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank (*), and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of August 25, 2005. This unified database was made possible thanks to the international collaboration among the three data banks. All the entries have accordingly been annotated using the feature keys common to them. *'GenBank' is a trademark of NIH, USA, and is operated by National Center for Biotechnology Information (NCBI) at NIH. 1.1. Announcement for changes in the present release Nothing particular. 1.2. Announcement for the forthcoming changes According to the agreement at the INSD collaborative meeting in 2005, the document, DDBJ/EMBL/GenBank Feature Table: Definition, will be revised on October 15, 2005. See also '2.9. FEATURES line' below. The revised points are introduced in advance on URL; http://www.ddbj.nig.ac.jp/insdc/icm2005-e.html#ft At DDBJ, the retrofit for this revision will be completed by the next periodical release. Please note that during this transitional period, some entries will be retrofitted. 2. DDBJ flat file format The database is a collection of "entry" which is the unit of the data. The entries submitted to databanks were processed and publicized according to the DDBJ format for distribution (flat file). The flat file includes the sequence and the information of submitters, references, source organisms, and "feature" information, etc. The items of the DDBJ flat file are explained at following; ------------------------------------------------------------------------------- LOCUS AB000000 450 bp mRNA linear HUM 08-JUL- 2002 DEFINITION Homo sapiens GAPD mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds. ACCESSION AB000000 VERSION AB000000.1 KEYWORDS . SOURCE Homo sapiens ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 450) AUTHORS Mishima,H. and Shizuoka,T. TITLE Direct Submission JOURNAL Submitted (30-NOV-2000) to the DDBJ/EMBL/GenBank databases. Hanako Mishima, National Institute of Genetics, DNA Data Bank of Japan; Yata 1111, Mishima, Shizuoka 411-8540, Japan (E-mail:mishima@supernig.nig.ac.jp, Tel:81-55-981-6853, Fax:81-55-981-6849) REFERENCE 2 (sites) AUTHORS Mishima,H., Shizuoka,T. and Fuji,I. TITLE Glyceraldehyde-3-phosphate dehydrogenase expressed in human liver JOURNAL Unpublished (2002) COMMENT Human cDNA sequencing project. FEATURES Location/Qualifiers source 1..450 /chromosome="12" /clone="GT200015" /clone_lib="lambda gt11 human liver cDNA (GeneTech. No.20)" /map="12p13" /mol_type="mRNA" /organism="Homo sapiens" /tissue_type="liver" CDS 86..>450 /codon_start=1 /gene="GAPD" /product="glyceraldehyde-3-phosphate dehydrogenase" /protein_id="BAA12345.1" /transl_table=1 /translation="MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFI TTDYMT YMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVTVFGCRNPKEI PWGETSAEFVVEYTG VFTDKDKAVAQLKGGAKKV" BASE COUNT 102 a 119 c 131 g 98 t ORIGIN 1 cccacgcgtc cggtcgcatc gcacttgtag ctctcgaccc ccgcatctca tccctcctct 61 cgcttagttc agatcgaaat cgcaaatggc gaagattaag atcgggatca atgggttcgg 121 gaggatcggg aggctcgtgg ccagggtggc cctgcagagc gacgacgtcg agctcgtcgc 181 cgtcaacgac cccttcatca ccaccgacta catgacatac atgttcaagt atgacactgt 241 gcacggccag tggaagcatc atgaggttaa ggtgaaggac tccaagaccc ttctcttcgg 301 tgagaaggag gtcaccgtgt tcggctgcag gaaccctaag gagatcccat ggggtgagac 361 tagcgctgag tttgttgtgg agtacactgg tgttttcact gacaaggaca aggccgttgc 421 tcaacttaag ggtggtgcta agaaggtctg // ------------------------------------------------------------------------------- 2.1. LOCUS line The format of LOCUS line in the flat file is shown below; --------- -------- Positions Contents --------- -------- 01-05 'LOCUS' 06-12 spaces 13-28 Locus name 29-29 space 30-40 Length of sequence, right-justified 41-41 space 42-43 'bp' 44-47 spaces 48-54 DNA, RNA, mRNA, pre-RNA, rRNA, scRNA, snRNA, snoRNA, tRNA, left justified 55-55 space 56-63 'linear' followed by two spaces, or 'circular' 64-64 space 65-67 The division code (see '3.1. Division categories') 68-68 space 69-79 Date, in the form dd-MMM-yyyy (e.g., 08-JUL-2002) ------------------------------------------------------------------------------ 2.2. DEFINITION line The definition briefly describes the information of gene(s). "DEFINITION" is constructed by each of the three data banks. 2.3. ACCESSION line This line shows accession number of the entry data. A unique accession number is issued to the data submitter by each of the three data banks. The accession number is composed of 1 alphabet character and 5 digits (ex. A12345) or 2 alphabet characters and 6 digits (ex. AB123456). The former style was used in 1980s, but later the latter style was introduced because of data explosion. All the entries designated by the accession numbers with the prefixes given below have been collected and processed by DDBJ, and the rest have been done by GenBank and EMBL/EBI. ------------------------------------------------------------------------------- C, D, E, AB, AG, AK, AP, AT, AU, AV, BA, BB, BD, BJ, BP, BR, BS, BW, BY, CI, CJ, DD, DE ------------------------------------------------------------------------------- If multiple entries are united to an entry, or if an entry is extensively modified after the submission, the responsible data banks may assign a new accession number to it. In these cases, the new accession number is called the primary accession number, and the old accession number(s) is/are called the secondary accession number(s). In the flat file, the primary accession number is indicated first, then the secondary accession number(s) follows. You can find the same updated entry with both the primary and the secondary accession numbers. 2.4. VERSION line This line consists of an accession number and a version number, like "AB123456.1", in which the digit(s) after the period is a version number. The data open to public for the first time is version number as "1". The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. 2.5. KEYWORDS line The data banks describe this line, if necessary. In many cases, the categories of the data (EST, HTG etc.), gene names and product names included in "KEYWORDS". 2.6. SOURCE line This line shows the scientific name on organism from which the sequence is obtained and an organelle type if the sequence is derived from an organelle other than the nucleus. 2.7. REFERENCE line The information on the submitters and references related to the submitted sequence is indicated in REFERENCE line. 2.8. COMMENT line. The information about an entry that can not be described using FEATURES or the other fields. 2.9. FEATURES line Biological features of a submitted sequence data are described with "Feature" key (the biological nature of the annotated feature), "Location" (the region of the sequence which corresponds to Feature), and "Qualifier" (supplementary information about Feature). The "Feature" and "Qualifier" keys used in the present release is defined by DDBJ/EMBL/GenBank Feature Table: Definition (Ver. 6.3 April 15, 2005). The document is continuously updated every half year. You can find its newest version on URL; http://www.ddbj.nig.ac.jp/FT/full_index.html 2.10. BASE COUNT line In the BASE COUNT line of the DDBJ flat file, 9 digits are allocated for each number of a (adenine), c (cytosine), g(guanine) and t (thymine). In the case of RNA sequence, uracil is indicated as "t" according to the rule of the international nucleotide database. In accordance with the relaxation of sequence length limitation, GenBank had already dropped the BASE COUNT line from their flat file format from GenBank Release 138 (Oct. 2003). DDBJ has decided to maintain the BASE COUNT line in our flat file format from the view that GC contents are still important information to characterize the sequence. 2.11. ORIGIN line The sequence data starts from the next line of ORIGIN. The sequence is indicated as lower case letters, delimited by space per 10 bases, starts a new line by 60 bases. The numbers described at left side of lines mean the ordinal number of the top base of the line. 3. Dataset categories There have been a number of genome projects going on worldwide. Among them human genome projects have probably been most productive and yielded a large number of ordinary sequences, huge amounts of genome sequences and EST (expressed sequence tags). Thus, we DDBJ have the human (HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences, while PRI division of GenBank database contains human sequences too. Note that the other divisions such as EST, GSS, and HTC may also contain human sequences. The present release is divided into 21 categories of organisms and others. See also '6.1. File categories' and '9. File list' below. The contents of the 21 categories are shown in the following. 3.1. Division categories The first 20 divisions are given below; HUM; human PRI; primates (other than human) ROD; rodents MAM; mammals (other than primates and rodents) VRT; vertebrates (other than mammals) INV; invertebrates (animals other than vertebrates) PLN; plants, fungi, plastids (eukaryotes other than animals) BCT; bacteria (including both Eubacteria and Archaea) VRL; viruses PHG; bacteriophages ENV; sequences obtained via environmental sampling methods SYN; synthetic constructs EST; expressed sequence tags; short single pass cDNA sequences GSS; genome survey sequences; short single pass genomic sequences HTC; high throughput cDNA sequences; The sequence submitted from full length cDNA sequencing projects. This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. HTG; high throughput genomic sequences The sequence submitted mainly from genome sequencing projects which regarded a clone as a sequencing unit. STS; sequence tagged sites The tag site for genome sequencing. The information of chromosome, map, PCR_condition is mandatory for this division. PAT; patented data The data submitted to JPO (Japan Patent Office), EPO (European Patent Office), or USPTO (United States Patent and Trademark Office). See also '3.3. Notice for patented data' in below. UNA; the data not annotated The UNA division is not used for recently submitted sequences. CON; Contig / Constructed To conjugate a series of entries, such as those submitted from a genome project, each of data banks constructs an entry and assign an accession number to a large scale sequence dataset. Such entries are classified into the CON division. The entry in the CON division has the information of joined accession numbers instead of the sequence data. The corresponding entries of the CON entry have been submitted to other divisions. The entries and bases in the CON division are not counted in the released numbers given on the top of the release note. 3.2. TPA separated from primary dataset TPA (Third Party Annotation) data are also available. The TPA data are a complement to the existing DDBJ/EMBL/GenBank comprehensive database of primary nucleotide sequences, which typically result from direct sequencing of cDNAs, ESTs, genomic DNAs etc. Primary entries are defined to be data for which the submitting group has done the sequencing and annotation, and as 'owner' of these data has privileges to submit updates/corrections etc. Primary entries used to build a TPA sequence are those that have been experimentally determined and are publicly available in the DDBJ/EMBL/GenBank databases. They may not be from a proprietary database. The entries and bases in TPA are not counted in the released numbers given on the top of the release note. 3.3. Notice for patented data This release includes PAT division for patented data as described above. The patented data are those which the Japanese Patent Office (JPO), United States Patent and Trademark Office (USPTO), and the European Patent Office (EPO) collected, processed and released. The prefixes of accession numbers for the patented data are shown below; ----------------------- JPO : E, BD, DD USPTO: I, AR EPO : A, AX, CQ, CS ----------------------- Note also that unauthorized use of the patented data may cause legal issues for which DDBJ takes no responsibility. 4. DDBJ staff This release is published by the following DDBJ staff. Gojobori T, Tateno Y, Nishikawa K, Sugawara H, Saitou N, Okubo K, Ikeo K, Suzuki Y, Fukuchi S, Kinjo A, Barrero R, Abe T, Sumiyama K, Aono H, Atsumi T, Ejima M, Fukuda D, Gojobori M, Hikino Y, Hirai T, Honda K, Hoshi N, Ichikawa K, Ishida K, Kato T, Kawamoto T, Kohira J, Koike T, Kosuge T, Kusakabe A, Kuwana Y, Li C, Lin Y, Maesako H, Mamiya K, Maruyama N, Mashima J, Miyazawa S, Mizunuma T, Murakata N, Nagira S, Nagura M, Nishida S, Nishinomiya N, Okido T, Sakai K, Shigemoto Y, Shiozawa H, Sugiyama F, Suzuki S, Tsuboi M, Tsutsui H, Yamamoto M, and Yokoyama E Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Research Organization of Information and Systems Mishima 411-8540, Japan Phone: +81 55 981 6853 FAX: +81 55 981 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp/ (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp/ (for DDBJ sequence data submission system) 5. Acknowledgment We are grateful to NCBI and EMBL/EBI for a firm friendship and an excellent collaboration with us. We also thank the Japanese Patent Office for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ uses the Super-SINET computer network for data collection, data exchange and various services. 6. File Contents 6.1. File categories This release covers 21 categories (see also '3. Dataset categories'.) of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct*** Category for bacteria ddbjcon*** Category for CON (contig sequences) ddbjenv*** Category for ENV (environmental samples) ddbjest*** Category for EST (expressed sequence tags) ddbjgss*** Category for GSS (genome survey sequences) ddbjhtc*** Category for HTC (high throughput cDNA sequences) ddbjhtg*** Category for HTG (high throughput genomic sequences) ddbjhum*** Category for human ddbjinv*** Category for invertebrates ddbjmam*** Category for mammals other than primates and rodents ddbjpat*** Category for patents ddbjphg*** Category for phages ddbjpln*** Category for plants ddbjpri*** Category for primates other than human ddbjrod*** Category for rodents ddbjsts*** Category for STS (sequence tagged sites) ddbjsyn*** Category for synthetic DNAs ddbjtpa*** Category for TPA (Third Party Annotation) ddbjuna*** Category for unannotated sequences ddbjvrl*** Category for viruses ddbjvrt*** Category for vertebrates other than mammals ------------------------------------------------------------------------------ Some of above in the present release were recorded in multiple ddbj***.seq files, each of which had 300 MB storage capacity as follows, respectively. --------------------- ddbjbct : 9 files ddbjenv : 2 files ddbjest : 319 files ddbjgss : 120 files ddbjhtc : 6 files ddbjhtg : 57 files ddbjhum : 22 files ddbjinv : 6 files ddbjmam : 2 files ddbjpat : 18 files ddbjpln : 14 files ddbjpri : 2 files ddbjrod : 17 files ddbjsts : 12 files ddbjvrl : 4 files ddbjvrt : 8 files --------------------- 6.2. File types The index files are not presented in this release except for ddbjacc.idx, ddbjgen.idx, ddbjjou.idx, and ddbjkey.idx. Instead, we have included a program by which to make the index files not presented in this release. For the use of the program, see the files, seq2indexes.doc, seq2indexes.c, and seq2indexes.h in this release. Each category then has the following nine types of files. Note that all the files except for ddbj***.seq are created by the user by use of seq2indexes as mentioned above. ------------------------------------------------------------------------------ ddbj***.seq List of an entry in DDBJ format, see 7.1. ddbj***.acc List of the accession numbers, see 7.2. ddbj***.aut List of the authors, see 7.3. ddbj***.dir List of the short directory in DDBJ style, see 7.4. ddbj***.idx List of indices, see 7.5. ddbj***.jou List of the journals, see 7.6. ddbj***.key List of the key words, see 7.7. ddbj***.org List of the species names, see 7.8. ddbj***.sdr List of the short directory in DDBJ style, see 7.9. ------------------------------------------------------------------------------ 7. Sample of the contents in each file 7.1. Part of the contents in the file 'ddbjbct1.seq' This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA linear BCT 14-APR- 2000 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Miki Jishage, National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail:mjishage@lab.nig.ac.jp, Tel:0559-81-6742, Fax:0559-81-6746) REFERENCE 2 (bases 1 to 993) AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol. Gen. Genet. 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /mol_type="mRNA" /organism="Escherichia coli" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /transl_table=11 /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEP SDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVAS RRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW WIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPV DDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKW LFELNAK" variation 75 /citation=[3] /replace="t" variation 97 /citation=[3] /replace="t" variation 99 /citation=[3] /replace="t" variation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ 7.2. Part of the contents in the file 'ddbjbct1.acc' The first column refers to the secondary accession number, second column to the locus name, and third to the primary accession number. The primary number may be the same as the secondary number. They are arranged in the ascending order of the secondary accession numbers. ------------------------------------------------------------------------------ D00681 -> AB028210 AB028210 D10012 -> AB010832 AB010832 D10013 -> AB010832 AB010832 D10048 -> AB008452 AB008452 D13563 -> AB018435 AB018435 D13614 -> AB006206 AB006206 D13762 -> AB063629 AB063629 D14537 -> AB040412 AB040412 D14604 -> AB001637 AB001637 D14607 -> AB027308 AB027308 ------------------------------------------------------------------------------ 7.3. Part of the contents in the file 'ddbjbct1.aut' For each author name given on the left to the arrow, the corresponding locus name and primary accession number are respectively listed on the right. They are arranged in the alphabetical order of the author names. ------------------------------------------------------------------------------ Aarestrup,F.M.Threlfall,E.J. -> AF393510 AF393510 Aarnikunnas,J. -> AY090766 AY090766 Aarnio,T. -> AY792975 AY792975 Aarnio,T. -> AY792976 AY792976 Aarnio,T. -> AY792977 AY792977 Aarnio,T. -> AY792978 AY792978 Aarnio,T. -> AY792979 AY792979 Aarnio,T. -> AY792980 AY792980 Aarnio,T. -> AY792981 AY792981 Aarnio,T. -> AY792982 AY792982 ------------------------------------------------------------------------------ 7.4. Part of the short directory in DDBJ style in the file 'ddbjbct1.dir' For each locus name given in the first column, the corresponding primary accession number, molecular type, number of nucleotide pairs, and description for the locus are respectively listed. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ AAC133631 AJ133631 DNA 1482 Alicyclobacillus acidoterrestris 16S rRNA gene, strain DSM 3922T. AAC133789 AJ133789 DNA 3097 Alicyclobacillus acidocaldarius cyclomaltodex trinase gene region. AAC243194 AJ243194 DNA 1720 Alicyclobacillus acidocaldarius kdpA gene. AAC252160 AJ252160 DNA 1638 Alicyclobacillus acidocaldarius cysA gene for putative ABC-transporter ATP-binding protein. AAC252161 AJ252161 DNA 8690 Alicyclobacillus acidocaldarius maltose/maltodextrine transport gene region (malEFGR genes, cdaA gene and glcA gene). AAC289685 AJ289685 DNA 453 Actinobacillus actinomycetemcomitans partial infB gene for translation initiation factor IF2, strain CCUG13227 T (ATCC33384, NCTC9710). AAC289686 AJ289686 DNA 453 Actinobacillus actinomycetemcomitans partial infB gene for translation initiation factor IF2, strain HK666. AAC289687 AJ289687 DNA 453 Actinobacillus actinomycetemcomitans partial infB gene for translation initiation factor IF2, strain HK1662. AAC289694 AJ289694 DNA 453 Actinobacillus actinomycetemcomitans partial infB gene for translation initiation factor IF2, strain HK1651. ------------------------------------------------------------------------------ 7.5. Part of the contents in the file 'ddbjbct1.idx' The first column refers to the locus name, second column to the starting site of the locus in byte, and third to its ending site in byte. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ %***************************** #AAC133631 1125664347 1125667802 #AAC133789 1125786300 1125794416 #AAC243194 1136871421 1136876093 #AAC252160 1146107711 1146112332 #AAC252161 1146112333 1146131350 #AAC289685 1155353186 1155356047 #AAC289686 1155356048 1155358781 #AAC289687 1155358782 1155361517 #AAC289694 1155377972 1155380768 #AAC308623 1167555889 1167560983 ------------------------------------------------------------------------------ 7.6. Part of the contents in the file 'ddbjbct1.jou' This gives information on the journal in which sequence data were published. ------------------------------------------------------------------------------ Yi Chuan Xue Bao 29 (12), 1111-1117 (2002) -> AY601668 AY601668 Yi Chuan Xue Bao 29 (12), 1111-1117 (2002) -> AY603420 AY603420 Yi Chuan Xue Bao 30 (4), 364-369 (2003) -> AF526379 AF526379 Yonsei Med. J. 39 (6), 520-525 (1998) -> AF373217 AF373217 Yonsei Med. J. 39 (6), 520-525 (1998) -> AF373218 AF373218 Z. Lebensm.-Unters. -Forsch., A Eur. Food Res. Technol. 209, 83-87(1999). -> ABA 7623 AJ007623 Z. Lebensm.-Unters. -Forsch., A Eur. Food Res. Technol. 209, 83-87(1999). -> ABA 7624 AJ007624 Zb. Bioteh. Fak. Univ. Ljubl. Kmet. Supl. 79(1), 107-113(2002). -> ASP012466 AJ 012466 Zb. Bioteh. Fak. Univ. Ljubl. Kmet. Supl. 79(1), 19-26(2002). -> ASP012466 AJ01 2466 Zentralbl. Bakteriol. 286 (1), 1-8 (1997) -> AF192489 AF192489 Zentralbl. Bakteriol. 290, 37-49(2000). -> LPN7311 AJ007311 Zentralbl. Bakteriol. 291, 345-352(2001). -> LPN300467 AJ300467 Zentralbl. Bakteriol. 292, 207-214(2002). -> ECO459584 AJ459584 Zhi Wu Bao Hu Xue Hui Hui Kan 44, 233-244 (2002) -> AF540014 AF540014 Zhi Wu Bing Li Xue Bao 34 (1), 80-85 (2004) -> AY447045 AY447045 Zhi Wu Bing Li Xue Hui Kan 12, 57-64 (2003) -> AF450275 AF450275 Zhiwu Baohuxue Hui Huikan 44, 185-208 (2002) -> AY122057 AY122057 Zhiwu Binglixue Huikan 6, 207-208 (1997) -> AF149819 AF149819 Zhongguo Jiaqin 25 (Supplement 1), 60-71 (2003) -> AY615358 AY615358 Zhongguo Kang Sheng Su Za Zhi 21, 94-97 (2003) -> AY293073 AY293073 Zhongguo Kang Sheng Su Za Zhi 28, 96-100 (2003) -> AY293071 AY293071 Zhongguo Kang Sheng Su Za Zhi 28, 96-100 (2003) -> AY293072 AY293072 Zhongguo Lin Chuang Yao Li Xue Za Zhi 19, 190-195 (2003) -> AY536040 AY536040 Zhongguo Nong Ye Ke Xue 36(1), 17-25 (2003) -> AY555768 AY555768 Zhonghua Liu Xing Bing Xue Za Zhi 24, 291-295 (2003) -> AY279003 AY279003 Zhonghua Min Guo Wei Sheng Wu Ji Mian Yi Xue Za Zhi (2003) In press -> AY299484 AY299484 Zhonghua Min Guo Wei Sheng Wu Ji Mian Yi Xue Za Zhi 22 (5), 489-492 (2002) -> AY 382160 AY382160 Zool. Sci. 14, 701-706 (1997) -> AB002286 AB002286 Zool. Sci. 14, 701-706 (1997) -> AB002287 AB002287 Zool. Sci. 14, 701-706 (1997) -> AB002288 AB002288 Zool. Sci. 14, 701-706 (1997) -> AB002289 AB002289 Zool. Sci. 14, 701-706 (1997) -> AB002290 AB002290 Zool. Sci. 14, 701-706 (1997) -> AB002291 AB002291 Zoolog. Sci. 17, 983-989 (2000) -> AB038366 AB038366 Zoolog. Sci. 17, 983-989 (2000) -> AB038367 AB038367 Zoolog. Sci. 17, 983-989 (2000) -> AB038368 AB038368 Zoolog. Sci. 17, 983-989 (2000) -> AB038369 AB038369 Zoolog. Sci. 17, 983-989 (2000) -> AB038370 AB038370 ------------------------------------------------------------------------------ 7.7. Part of the contents in the file 'ddbjbct1.key' For the locus and accession number respectively given on the right to the arrow, the corresponding keywords are listed on the left. ------------------------------------------------------------------------------ Synechococcus sp. DNA for intrinsic membrane protein, malK-like protein, cyanase, complete cds. -> AB000100 AB000100 cynS; cyanase; cynD; malK-like protein; cynB; intrinsic membrane protein. -> AB000100 AB000100 Direct Submission -> AB000100 AB000100 Identification and nitrogen regulation of the cyanase gene from the cyanobacteri a Synechocystis sp. strain PPC 6803 and Synechococcus sp. strain PPC 7942 -> AB000100 AB000100 Sequence updated (31-Mar-1997) by: Tatsuo Omata Sequence updated (14-Aug-1997) -> AB000100 AB000100 Sphingomonas sp. 16S ribosomal RNA. -> AB000106 AB000106 16S rRNA. -> AB000106 AB000106 Direct Submission -> AB000106 AB000106 Sphingomonas sp. VT1 16s rRNA -> AB000106 AB000106 Synechococcus sp. gene for ribosomal proteins, complete cds. -> AB000111 AB000111 tRNA pseudouridine synthase I; 50S ribosomal protein L17; DNA-dircted RNA polymerase alpha chain; 30S Ribosomal Protein S11; 30S ribosomal protein S13; 50S ribosomal protein L36; adenylate kinase; preprotein translocase SecY subunit; 50S ribosomal protein L15; 30S ribosomal protein S5; 50S ribosomal protein L18; 50S ribosomal protein L6; 30S ribosomal protein S8; 50S ribosomal protein L5; 50S ribosomal protein L24; 50S ribosomal protein L14; 30S ribosomal protein S17; 50S ribosomal protein L29; 50S ribosomal protein L16; 30S ribosomal protein S3; 50S ribosomal protein L22; 30S ribosomal protein S19; 50S ribosomal protein L2; 50S ribosomal protein L23; 50S ribosomal protein L4; 50S ribosomal protein L3. -> AB000111 AB000111 Direct Submission -> AB000111 AB000111 ------------------------------------------------------------------------------ 7.8. Part of the contents in the file 'ddbjbct1.org' For the locus and accession number respectively given on the right to the arrow, the corresponding taxonomic names are listed on the left. They are arranged in the alphabetical order of the species names. ------------------------------------------------------------------------------ 'Flavobacterium' lutescens 'Flavobacterium' lutescens Bacteria; Proteobacteria; gamma subdivision; Pseudomonadaceae; Pseudomonas. -> AB035478 AB035478 'Flavobacterium' lutescens 'Flavobacterium' lutescens Bacteria; Proteobacteria; gamma subdivision; Pseudomonadaceae; Pseudomonas. -> AB042983 AB042983 'Fragaria multicipita' phytoplasma 'Fragaria multicipita' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF036354 AF036354 'Fragaria multicipita' phytoplasma 'Fragaria multicipita' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF190224 AF190224 'Fragaria multicipita' phytoplasma 'Fragaria multicipita' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF190225 AF190225 'Helichrysum bracteatum' phytoplasma 'Helichrysum bracteatum' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF515771 AF515771 'Momordica charantia' phytoplasma 'Momordica charantia' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> PHY431368 AJ431368 'Rehmannia glutinosa var. purpurea' phytoplasma 'Rehmannia glutinosa var. purpurea' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF335107 AF335107 'Rhizomonas' sp. 'Rhizomonas' sp. Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. -> UBA132327 AJ132327 'Vinca minor' phytoplasma 'Vinca minor' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AY144608 AY144608 ------------------------------------------------------------------------------ 7.9. Part of the short directory file in DDBJ style in the file 'ddbjbct1.sdr' The short directory file contains brief descriptions of all of the sequence entries contained in the DDBJ style. ------------------------------------------------------------------------------ AAC133631 Alicyclobacillus acidoterrestris 16S rRNA gene, strain DSM 1482bp AAC133789 Alicyclobacillus acidocaldarius cyclomaltodextrinase gene 3097bp AAC243194 Alicyclobacillus acidocaldarius kdpA gene. 1720bp AAC252160 Alicyclobacillus acidocaldarius cysA gene for putative 1638bp AAC252161 Alicyclobacillus acidocaldarius maltose/maltodextrine 8690bp AAC289685 Actinobacillus actinomycetemcomitans partial infB gene for 453bp AAC289686 Actinobacillus actinomycetemcomitans partial infB gene for 453bp AAC289687 Actinobacillus actinomycetemcomitans partial infB gene for 453bp AAC289694 Actinobacillus actinomycetemcomitans partial infB gene for 453bp AAC308623 Alicyclobacillus acidocaldarius celA gene for cellulase. 1778bp AAC417690 Actinobacillus actinomycetemcomitans mukB gene. 4491bp AAC419840 Acetobacter aceti 16S rRNA gene, strain LMG 1531. 1440bp AAC430786 Actinobacillus actinomycetemcomitans partial fur gene for 1246bp AAC493667 Alicyclobacillus acidocaldarius subsp. rittmannii 16S rRNA 1472bp AAC496806 Alicyclobacillus acidocaldarius 16S rRNA gene, strain DSM 1507bp ------------------------------------------------------------------------------ In addition to the tables for the four following index files are included in this release. These files were prepared for BCT, ENV, EST, GSS, HTC, HTG, HUM, INV, MAM, PAT, PHG, PLN, PRI, ROD, STS, SYN, UNA, VRL, and VRT divisions. Accession number index file Keyword phrase index file Journal citation index file Gene name index file A brief description is given for each file in the above section, '3. Dataset categories'. 7.10. Part of the accession number index file in the 'ddbjacc.idx' The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00001 ECPBPA BCT X04516 D00002 ECPYRC BCT X04469 D00003 HUMP450M HUM D00003 D00004 FLBFLBL40 VRL D00004 D00005 IBAMEM682 VRL D00005 D00006 BACPNS1981 BCT D00006 D00007 CHKCALGRP VRT D00007 D00008 ECPNTAB BCT X04195 D00009 DROPER1 INV D00009 ------------------------------------------------------------------------------ 7.11. Part of the keyword phrase index file in the 'ddbjkey.idx' Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ "COAT PROTEIN SMO511347 VRL AJ511347 'TNPA GENE UBA564903 BCT AJ564903 'ZINC-FINGER' MOTIF PRNS53 VRL X60546 (+) MATING TYPE SURFACE PROTEIN ABGPSSP PLN M94861 (1,3 TABETGLUB PLN Z22874 (1,3)-BETA-D-GLUCAN BINDING PROTEIN AJ606470 INV AJ606470 (1,3)BETA-GLUCAN SYNTHASE NCU09275 PLN U09275 (1,4)-BETA-D-ARABINOXYLAN ARABINOFURANOHYDROLASE ANAXHA PLN Z78011 ANTUAXHA PLN Z78010 (1,6)-BETA-GLUCAN BIOSYNTHESIS YSAKRE1A PLN M81588 (1-3)-BETA-GLUCANASE NTSP41AGN PLN X81560 PA13BGPT PLN X57794 (1-3,1-4)-BETA-D-GLUCANASE HVBDG PLN X52572 (1-4)-BETA-MANNAN ENDOHYDROLASE CAR278996 PLN AJ278996 CAR293305 PLN AJ293305 (2',5'-OLIGOISOADENYLATE SYNTHETASE-DEPENDENT) AL138776 HUM AL138776 (2'-5') OLIGO(A) SYNTHASE E16 SSO4G06 EST F14610 (2'-5')OLIGOADENYLATE SYNTHETASE HSA225089 HUM AJ225089 HUMSYN25A HUM D00068 SSA225090 MAM AJ225090 (6')-IB' AMINOGLYCOSIDE ACETYLTRANSFERASE AXY278514 BCT AJ278514 PAE291609 BCT AJ291609 (8,11)-LINOLEOYL DESATURASE COF245938 PLN AJ245938 ------------------------------------------------------------------------------ 7.12. Part of the journal citation index file in 'ddbjjou.idx' The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ (ER) AAPS PHARMSCI. 4 (3), DOI 10.1208/PS040315 (2002) AY170916 ROD AY170916 (ER) AM. J. HUM. GENET. 76 (1) (2004) IN PRESS AY753209S1 HUM AY753209 AY753209S2 HUM AY753210 (ER) ARCH. VIROL. (2004) IN PRESS AF531505 VRL AF531505 AY518899 VRL AY518899 AY518900 VRL AY518900 AY518901 VRL AY518901 AY518902 VRL AY518902 AY518903 VRL AY518903 AY518904 VRL AY518904 AY518905 VRL AY518905 AY518906 VRL AY518906 AY518907 VRL AY518907 AY518908 VRL AY518908 AY518909 VRL AY518909 AY518910 VRL AY518910 AY518911 VRL AY518911 AY518912 VRL AY518912 AY518913 VRL AY518913 AY518914 VRL AY518914 AY518915 VRL AY518915 AY518916 VRL AY518916 AY518917 VRL AY518917 AY518918 VRL AY518918 AY518919 VRL AY518919 AY518920 VRL AY518920 AY518921 VRL AY518921 AY518922 VRL AY518922 AY518923 VRL AY518923 AY518924 VRL AY518924 AY518925 VRL AY518925 AY518926 VRL AY518926 AY518927 VRL AY518927 AY518928 VRL AY518928 AY518929 VRL AY518929 AY518930 VRL AY518930 AY518931 VRL AY518931 AY518932 VRL AY518932 AY521234 VRL AY521234 AY521235 VRL AY521235 AY521236 VRL AY521236 AY521237 VRL AY521237 AY521238 VRL AY521238 (ER) ARTERIOSCLER. THROMB. VASC. BIOL. (2004) IN PRESS AY563557 HUM AY563557 (ER) BIOCHEM. BIOPHYS. RES. COMMUN. 325 (1), 203-214 (2004) AY563137 HUM AY563137 (ER) BIOCHEM. J./10.1042/BJ20030293 HSA496460 HUM AJ496460 ------------------------------------------------------------------------------ 7.13. Part of the gene name index file in 'ddbjgen.idx' This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ 'ARR BX927156 BCT BX927156 'BGLG BX927156 BCT BX927156 'BGLS BX927148 BCT BX927148 'BGLY' BX927156 BCT BX927156 'BRNQ AF305888 BCT AF305888 'COMK AL591983 BCT AL591983 AL596172 BCT AL596172 'CRCB BX927155 BCT BX927155 'CRTI BX927155 BCT BX927155 'DPPE LDDIPEP BCT Z34898 'FIC BX936398 BCT BX936398 ------------------------------------------------------------------------------ 8. Release history Release Date Entries Bases Comments 63 09/05 47,741,593 52,246,110,341 62 06/05 45,249,444 49,158,155,283 ENV started Version for release note started 61 03/05 43,118,204 47,099,081,750 Changed style of release note 60 12/04 40,583,945 44,416,752,273 /db_xref="H-inv:**" started 59 09/04 37,926,117 42,245,956,937 58 06/04 34,917,581 39,812,635,108 57 03/04 32,693,678 38,008,449,840 56 12/03 30,405,173 36,079,046,032 55 09/03 27,753,140 34,280,225,489 54 06/03 25,149,821 32,162,041,177 53 02/03 23,250,813 29,711,299,332 52 12/02 20,354,812 26,931,456,316 51 09/02 18,401,358 22,782,404,136 TPA started 50 06/02 17,260,693 20,158,357,982 49 04/02 16,503,157 18,579,627,226 48 01/02 15,016,100 16,197,713,855 47 10/01 13,266,610 14,145,671,645 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------ Since release 62 ------------------ Release version number is introduced: DDBJ has started to include the item, 'version', for its release note, which indicates a version for its periodical release. It is expressed like '62.0', in which the digit(s) after the period is a version number. The reason for adding the version number is that a released data is sometimes revised due to urgent and necessary corrections. The number is increased by one every time when a revised periodical release is made public until the next release. Introduction of ENV division: Recently, the submissions of the sequences derived from environmental samples have rapidly increased. To accommodate such submissions, a new division, ENV, has been created (See also '3.1. Division categories'). This division contains the sequences obtained via direct molecular isolation such as PCR, DGGE, or any anonymous method. In the past, the sequences derived from environmental samples belonged to taxonomic divisions, mainly BCT. At DDBJ, the retrofit to transfer relevant entries from taxonomic divisions to the ENV division starts in the present release, and ends by the next periodical release. Please note that during this transitional period, some entries to be eventually placed in the ENV division will be found in other divisions. Strand information is removed: The strand information of LOCUS line in the flat file has been removed as shown below. See also '2.1. LOCUS line'. ---------------------------------------------------------------------------- Old (-rel. 61): 44-44 space 45-47 spaces, ss- (single-stranded), ds- (double-stranded), or ms- (mixed-stranded) New (rel. 62-): 44-47 spaces ---------------------------------------------------------------------------- ------------------ Since release 61 ------------------ The style of release note (this file) has been changed. Some entries have the sequential format for the secondary accession numbers in the ACCESSION line, in order to make the expression of secondary accession numbers in the past short. For example; ------------------------------------------------------------------------------ Before; ACCESSION AB000802 D85885 D85886 D85887 After; ACCESSION AB000802 D85885-D85887 ------------------------------------------------------------------------------ See also '2.3. ACCESSION line'. ------------------ Since release 60 ------------------ The cross-reference to the H-invitational has been included. ------------------ Since release 56 ------------------ The three data banks have agreed that the maximum length limitation (350 kb) of a submitted sequence be relaxed. The BASE COUNT line of the DDBJ flat file format has been changed, corresponding to the relaxation of the maximum sequence length restriction in the entry that had been practiced at DDBJ/EMBL/GenBank International Nucleotide Sequence Databases. In the BASE COUNT line of the DDBJ flat file, 6 digits had been allocated for each number of a, c, g, t and other bases in the sequence. Hereafter, in the new flat file format, 9 digits are allocated for each number of a, c, g and t, while the numbers of other bases are removed. In accordance with the relaxation of sequence length limitation, GenBank had already dropped the BASE COUNT line from their flat file format from GenBank Release 138 (Oct. 2003). We DDBJ have decided to maintain the BASE COUNT line in our flat file format from the view that GC contents are still important information to characterize the sequence. The changes in the BASE COUNT line are shown below. ---------------------------------------------------------------------------- Old (-rel. 55): 1 6 11 16 21 26 31 36 41 46 51 56 61 66 71 |----|----|----|----|----|----|----|----|----|----|----|----|----|----| BASE COUNT 123456 a 123456 c 123456 g 123456 t 123456 others New (rel. 56-): 1 6 11 16 21 26 31 36 41 46 51 56 61 66 71 |----|----|----|----|----|----|----|----|----|----|----|----|----|----| BASE COUNT 123456789 a 123456789 c 123456789 g 123456789 t ---------------------------------------------------------------------------- The SOURCE in the flat file is revisited and revised if necessary in accordance with the unified taxonomy database common to the three data banks. ------------------ Since release 54 ------------------ '/sequenced_mol' qualifier has been changed to '/mol_type' qualifier. We accordingly completed retrofitting the pertinent entries. This change was made on the agreement at the INSD collaborative meeting in 2002. ------------------ Since release 51 ------------------ The TPA (Third Party Annotation) dataset has been available. The dataset is a complement to the existing DDBJ/EMBL/GenBank database of the primary nucleotide sequences which were obtained from direct sequencing of cDNAs, ESTs, genomic DNAs etc. The format of LOCUS line in the flat file has been changed as shown below to adjust to the GenBank format. ------------------------------------------------------------------------------ Old (-rel. 50): LOCUS AB000001 660 bp DNA PLN 01-FEB-2001 New (rel. 51-): LOCUS AB000001 660 bp DNA linear PLN 01-FEB- 2001 ------------------------------------------------------------------------------ ------------------ Since release 45 ------------------ The HTC (High Throughput cDNA) division has been included. This is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. ------------------ Since release 41 ------------------ The CON division has been included. This division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. ------------------ Since release 40 ------------------ The RNA division was terminated. The RNA data have been redistributed according to the category of the organism. Therefore, you will find a human RNA sequence, for example, in the HUM division. ------------------ Since release 37 ------------------ The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence. It is expressed like AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. ------------------ Since release 31 ------------------ We have started adopting the unified taxonomy database to unify the biological source of the sequence. The database is made up with scientific names, ID of unidentified organisms, and synthetic constructs etc. ------------------ Since release 30 ------------------ NID and PID were terminated. This change was made on the agreement at the INSD collaborative meeting in 1999. ------------------ Since release 28 ------------------ The HTG (High Throughput Genomic sequence) has been included. This division was created to cope with genome project teams which deal with a clone as a sequencing unit. We terminated the ORG (Organelle) division. Thus, if you are interested in human mitochondrial sequences, for example, you are now advised to refer to the HUM division. ------------------ Since release 27 ------------------ The GSS division has been included. GSS stands for Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. ------------------ Since release 25 ------------------ DDBJ release contains amino acid sequences that were translated from the corresponding nucleotide sequences of the database. In the translation we paid much attention to the fact that some species or organella have a codon different from the universal one, and used the proper codon table. ------------------ Since release 22 ------------------ The HUM division has been included. Human genome projects have probably been most productive and yielded a large number of sequences Thus, we have the human (HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. ------------------ Since release 12 ------------------ The EST (Expressed Sequence Tag) division has been included. The number of ESTs has been increasing at an enormous rate and is expected to be growing even more rapidly in the future. Thus, we created a division for ESTs ------------------ Since release 10 ------------------ The sequences submitted to GenBank or EMBL have been included in the release. 9. File list. The files in this release are arranged in the following order with non-labeled format. ----------------------------------------------------------------------- file name file size ----------------------------------------------------------------------- ddbjrel.txt (DDBJ release note) 99401 ddbjacc.idx (Accession number index file) 1861622648 ddbjgen.idx (Gene name index file) 78165942 ddbjjou.idx (Journal citation index file) 1973699468 ddbjkey.idx (Keyword phrase index file) 1761011027 ----------------------------------------------------------------------- file name number of entries number of bases file size ----------------------------------------------------------------------- ddbjbct1.seq 25660 123515461 299031548 ddbjbct2.seq 5691 131221466 299156826 ddbjbct3.seq 5816 133873615 299004769 ddbjbct4.seq 65059 106201878 300003569 ddbjbct5.seq 27389 119460933 299229604 ddbjbct6.seq 41345 125127714 304453191 ddbjbct7.seq 238 129882686 307863927 ddbjbct8.seq 98 136621540 301422022 ddbjbct9.seq 43277 110171851 281880081 ddbjenv1.seq 113706 83476324 299001826 ddbjenv2.seq 62429 54932486 171777420 ddbjest1.seq 89038 33659276 299001113 ddbjest2.seq 94317 37755215 299000822 ddbjest3.seq 94312 36782268 299000335 ddbjest4.seq 89533 28295296 299001208 ddbjest5.seq 93269 35791981 299002885 ddbjest6.seq 96785 38402784 299001651 ddbjest7.seq 97673 37699761 299002524 ddbjest8.seq 97341 37574284 299002440 ddbjest9.seq 96945 38317873 299001957 ddbjest10.seq 99049 38944819 299001781 ddbjest11.seq 96692 38393984 299003569 ddbjest12.seq 95616 42565513 299000595 ddbjest13.seq 102724 42255622 299001129 ddbjest14.seq 101496 40489302 299001989 ddbjest15.seq 97431 40410502 299003423 ddbjest16.seq 94848 41789330 299000180 ddbjest17.seq 95298 39093022 299001787 ddbjest18.seq 97185 41444036 299001199 ddbjest19.seq 96024 42977225 299001368 ddbjest20.seq 93592 37861529 299001599 ddbjest21.seq 99914 44192115 299002327 ddbjest22.seq 130914 61036969 299000789 ddbjest23.seq 121361 63118064 299001850 ddbjest24.seq 103896 57765214 299003124 ddbjest25.seq 87925 72683631 299000532 ddbjest26.seq 114269 66508005 299000945 ddbjest27.seq 121493 61554107 299000268 ddbjest28.seq 122362 64901304 299000010 ddbjest29.seq 122423 61327606 299002197 ddbjest30.seq 127346 58056934 299001081 ddbjest31.seq 95889 31811840 299000850 ddbjest32.seq 92626 24603527 299002319 ddbjest33.seq 80992 24198434 299003400 ddbjest34.seq 60698 16734452 298999981 ddbjest35.seq 60605 16182024 299002023 ddbjest36.seq 106730 44868910 299000982 ddbjest37.seq 117639 55069279 299001287 ddbjest38.seq 104450 53547907 299002932 ddbjest39.seq 113956 55953899 299000634 ddbjest40.seq 120574 60649096 299000518 ddbjest41.seq 95040 40897092 299002357 ddbjest42.seq 87602 38706836 299002973 ddbjest43.seq 92872 39734018 299001381 ddbjest44.seq 102209 41337069 299000747 ddbjest45.seq 90545 35632262 299001106 ddbjest46.seq 85815 38146099 299001560 ddbjest47.seq 95616 42921987 299002179 ddbjest48.seq 94368 42312812 299000486 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ddbjest100.seq 84851 46670973 299001926 ddbjest101.seq 90088 46720520 299001564 ddbjest102.seq 86143 48980403 299003264 ddbjest103.seq 87956 51803825 299003283 ddbjest104.seq 92692 57497082 299001871 ddbjest105.seq 87214 50045005 299001333 ddbjest106.seq 92158 53037338 299002307 ddbjest107.seq 89425 54906441 299002263 ddbjest108.seq 84718 47628469 299000972 ddbjest109.seq 122108 67924007 298999928 ddbjest110.seq 88829 47214915 299001342 ddbjest111.seq 128535 68745746 299000363 ddbjest112.seq 127046 68384916 299001711 ddbjest113.seq 105668 61779768 299001159 ddbjest114.seq 105788 59474241 299000137 ddbjest115.seq 117476 72994106 299002386 ddbjest116.seq 110802 62907461 299001320 ddbjest117.seq 89780 52222368 299001554 ddbjest118.seq 84393 39443938 299001165 ddbjest119.seq 73667 34212028 299000644 ddbjest120.seq 81333 39728944 299002681 ddbjest121.seq 70429 36397513 299002153 ddbjest122.seq 101117 68025799 299001700 ddbjest123.seq 84000 53789787 299002488 ddbjest124.seq 97869 56634381 299003580 ddbjest125.seq 78327 39160902 299002417 ddbjest126.seq 83259 49377390 299002103 ddbjest127.seq 83026 51369832 299003234 ddbjest128.seq 83011 49400090 299001078 ddbjest129.seq 121657 56105988 299002627 ddbjest130.seq 105607 62719512 299000814 ddbjest131.seq 119330 69210451 299001994 ddbjest132.seq 112526 61393078 299002246 ddbjest133.seq 90133 38397245 299000635 ddbjest134.seq 106530 53839184 299001855 ddbjest135.seq 102761 44228787 299001423 ddbjest136.seq 113760 48851510 299002148 ddbjest137.seq 82646 56064272 299000535 ddbjest138.seq 89465 46941568 299002243 ddbjest139.seq 81092 52478657 299001728 ddbjest140.seq 89009 38360966 299001289 ddbjest141.seq 95868 53539693 299002358 ddbjest142.seq 98801 49266633 299000347 ddbjest143.seq 83229 42600938 299003186 ddbjest144.seq 88440 64181837 299002600 ddbjest145.seq 86462 51715822 299001299 ddbjest146.seq 87040 52806963 299001522 ddbjest147.seq 90196 63901746 299003074 ddbjest148.seq 90775 47843790 299002087 ddbjest149.seq 88642 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ddbjest174.seq 56210 20577869 298999972 ddbjest175.seq 58504 20795484 299002608 ddbjest176.seq 56570 20532313 299001665 ddbjest177.seq 56233 23738512 299001899 ddbjest178.seq 57180 20875944 299003185 ddbjest179.seq 58561 21685821 299003246 ddbjest180.seq 58343 23475258 299003755 ddbjest181.seq 55441 23999543 299003793 ddbjest182.seq 55809 23287499 299002312 ddbjest183.seq 56308 23236934 299004192 ddbjest184.seq 56319 22021315 299005152 ddbjest185.seq 54690 32157955 299003711 ddbjest186.seq 61830 32156085 299001391 ddbjest187.seq 128982 51008282 299000689 ddbjest188.seq 89899 55372564 299001564 ddbjest189.seq 88161 56900053 299001209 ddbjest190.seq 88302 56317681 299001764 ddbjest191.seq 91587 53721183 299002895 ddbjest192.seq 84401 53918151 299002435 ddbjest193.seq 84472 51042947 299000675 ddbjest194.seq 102011 50054688 299000079 ddbjest195.seq 118940 57957077 299000167 ddbjest196.seq 90512 49376813 299001256 ddbjest197.seq 83371 40325296 299001070 ddbjest198.seq 90343 51920100 299001179 ddbjest199.seq 91180 42910200 298999960 ddbjest200.seq 95073 58056470 299000824 ddbjest201.seq 81490 46507223 299000424 ddbjest202.seq 89669 44609962 299000064 ddbjest203.seq 106695 58796494 299002121 ddbjest204.seq 97903 63423392 299001436 ddbjest205.seq 106745 66880959 299002049 ddbjest206.seq 128220 60543520 299002745 ddbjest207.seq 97180 55434606 299002597 ddbjest208.seq 92508 53394812 299001889 ddbjest209.seq 95181 44053174 299001947 ddbjest210.seq 93558 45511004 299000012 ddbjest211.seq 81271 48629771 299001120 ddbjest212.seq 83864 50834673 299000758 ddbjest213.seq 85622 54002828 299002880 ddbjest214.seq 79159 47882224 299000691 ddbjest215.seq 104993 53955059 299000663 ddbjest216.seq 100574 56628997 299002519 ddbjest217.seq 123191 70882383 299000578 ddbjest218.seq 151534 60795562 299001754 ddbjest219.seq 91824 47401398 299002773 ddbjest220.seq 86207 51546434 299002325 ddbjest221.seq 102372 54055293 299001490 ddbjest222.seq 91063 52687883 299000827 ddbjest223.seq 89353 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ddbjest273.seq 88306 54844924 299001575 ddbjest274.seq 90535 58399261 299001743 ddbjest275.seq 97278 57850799 299000090 ddbjest276.seq 82823 47329085 299002504 ddbjest277.seq 89523 57392966 299001788 ddbjest278.seq 104362 61697620 299000887 ddbjest279.seq 87573 54501683 299000470 ddbjest280.seq 75635 53940958 299004361 ddbjest281.seq 73960 52293864 299001459 ddbjest282.seq 84316 52956222 299000907 ddbjest283.seq 83440 50409162 299003066 ddbjest284.seq 75674 48072578 299001233 ddbjest285.seq 74115 51754325 299000053 ddbjest286.seq 77516 53747901 299001376 ddbjest287.seq 64011 45798086 299003917 ddbjest288.seq 97384 49892006 299001700 ddbjest289.seq 67058 52232949 299001730 ddbjest290.seq 88024 55938515 299000933 ddbjest291.seq 74063 44730050 299002352 ddbjest292.seq 139602 71817704 299000274 ddbjest293.seq 104658 64092358 299002127 ddbjest294.seq 90776 63366080 299008538 ddbjest295.seq 55250 45236827 299004536 ddbjest296.seq 60349 75570240 299000130 ddbjest297.seq 83062 58874028 299000787 ddbjest298.seq 92574 56093777 299002776 ddbjest299.seq 91227 57617579 299001228 ddbjest300.seq 81618 53468790 299000700 ddbjest301.seq 79573 61515163 299002004 ddbjest302.seq 73262 49745529 299000545 ddbjest303.seq 72774 51099736 299002168 ddbjest304.seq 82399 59101856 299000812 ddbjest305.seq 82642 61106080 299000741 ddbjest306.seq 73631 50675269 299002449 ddbjest307.seq 66856 50343122 299003157 ddbjest308.seq 75011 52547931 299001626 ddbjest309.seq 84904 48995554 299001933 ddbjest310.seq 76883 53101096 299000033 ddbjest311.seq 73172 51314651 299000409 ddbjest312.seq 75821 58221737 299001033 ddbjest313.seq 82999 52007687 299000742 ddbjest314.seq 91476 32570449 299002247 ddbjest315.seq 93896 34512002 299002125 ddbjest316.seq 93392 33721178 299001419 ddbjest317.seq 99896 34184358 299000295 ddbjest318.seq 90245 36968627 299000844 ddbjest319.seq 45177 16064900 137611060 ddbjgss1.seq 104242 75939380 299001896 ddbjgss2.seq 101451 70705222 299002048 ddbjgss3.seq 106269 59028414 299000870 ddbjgss4.seq 79842 68405635 298999930 ddbjgss5.seq 80478 67045275 299003176 ddbjgss6.seq 81263 65434006 299002280 ddbjgss7.seq 83862 67110979 299001088 ddbjgss8.seq 97849 75664919 299001544 ddbjgss9.seq 104188 54545977 298999951 ddbjgss10.seq 98274 75637191 299002935 ddbjgss11.seq 83176 69517437 299002052 ddbjgss12.seq 81343 73245704 299000072 ddbjgss13.seq 76953 64869180 299000641 ddbjgss14.seq 106353 44103685 299000364 ddbjgss15.seq 113633 47839800 299000674 ddbjgss16.seq 113467 51088292 299001889 ddbjgss17.seq 107162 52954595 299001791 ddbjgss18.seq 99054 52244439 299000176 ddbjgss19.seq 99748 49903749 299001681 ddbjgss20.seq 98372 50107402 299000351 ddbjgss21.seq 94226 47545850 299000449 ddbjgss22.seq 95516 53971148 299000479 ddbjgss23.seq 89841 46623312 299000154 ddbjgss24.seq 95424 49814251 299001788 ddbjgss25.seq 92435 61524687 299000295 ddbjgss26.seq 89237 41006585 299001394 ddbjgss27.seq 98671 57358519 299001392 ddbjgss28.seq 87649 40233879 299003963 ddbjgss29.seq 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68581568 299001897 ddbjgss105.seq 107989 71995451 299002662 ddbjgss106.seq 104279 67670012 298999992 ddbjgss107.seq 107798 65295561 299000207 ddbjgss108.seq 102068 75058548 299000322 ddbjgss109.seq 119494 66842215 299000912 ddbjgss110.seq 100493 63950767 299002549 ddbjgss111.seq 110276 78137959 299000128 ddbjgss112.seq 99911 61059160 299000962 ddbjgss113.seq 104248 68965339 299000726 ddbjgss114.seq 118653 68636128 299001280 ddbjgss115.seq 109235 70225752 299000579 ddbjgss116.seq 104163 74105364 299002432 ddbjgss117.seq 104344 74943847 299000174 ddbjgss118.seq 98375 53735631 299000212 ddbjgss119.seq 98568 89059342 299002806 ddbjgss120.seq 81298 63053920 236880230 ddbjhtc1.seq 37990 68268557 299004130 ddbjhtc2.seq 53826 61210602 299002692 ddbjhtc3.seq 83290 75314860 299002613 ddbjhtc4.seq 86877 94376684 299002138 ddbjhtc5.seq 80732 78134407 299000639 ddbjhtc6.seq 37516 44395902 153728630 ddbjhtg1.seq 1565 225473555 299011669 ddbjhtg2.seq 3363 221581238 299218067 ddbjhtg3.seq 3027 223578735 299028430 ddbjhtg4.seq 1907 223347228 299008749 ddbjhtg5.seq 1522 221541441 299147952 ddbjhtg6.seq 1499 221736036 299180513 ddbjhtg7.seq 1538 221312943 299200852 ddbjhtg8.seq 1334 225538300 299194237 ddbjhtg9.seq 1754 219325140 299821276 ddbjhtg10.seq 1141 228961021 299172605 ddbjhtg11.seq 898 230011819 299159828 ddbjhtg12.seq 884 229958004 299267719 ddbjhtg13.seq 967 229816960 299212152 ddbjhtg14.seq 919 229948953 299251105 ddbjhtg15.seq 2116 210273915 299189592 ddbjhtg16.seq 1332 223862861 299136627 ddbjhtg17.seq 1109 227079372 299078127 ddbjhtg18.seq 1033 228337983 299082312 ddbjhtg19.seq 1037 228684707 299118867 ddbjhtg20.seq 1027 228054916 299027284 ddbjhtg21.seq 919 229740398 299116912 ddbjhtg22.seq 1030 229006093 299322233 ddbjhtg23.seq 1087 227784374 299068509 ddbjhtg24.seq 1099 227761974 299072178 ddbjhtg25.seq 1132 227853427 299198339 ddbjhtg26.seq 1032 228862596 299054925 ddbjhtg27.seq 1145 227235750 299257459 ddbjhtg28.seq 1033 228784111 299073863 ddbjhtg29.seq 1019 229193119 299302400 ddbjhtg30.seq 1018 228953435 299242748 ddbjhtg31.seq 1122 227573960 299007911 ddbjhtg32.seq 1122 227976098 299066653 ddbjhtg33.seq 1213 226905441 299098069 ddbjhtg34.seq 1404 224082478 299183416 ddbjhtg35.seq 1501 224430569 299046118 ddbjhtg36.seq 1378 225872776 299132540 ddbjhtg37.seq 1338 226508991 299479206 ddbjhtg38.seq 1440 228450567 299158876 ddbjhtg39.seq 1475 228605653 299094436 ddbjhtg40.seq 1395 228744498 299074317 ddbjhtg41.seq 1293 228790853 299075393 ddbjhtg42.seq 1116 226551194 299091106 ddbjhtg43.seq 1257 227574060 299030447 ddbjhtg44.seq 1099 226878531 299125891 ddbjhtg45.seq 1309 227710051 299002526 ddbjhtg46.seq 1118 227389835 299188335 ddbjhtg47.seq 1231 227473157 299017116 ddbjhtg48.seq 1122 226832243 299126003 ddbjhtg49.seq 1370 225773288 299098802 ddbjhtg50.seq 1961 223060410 299066260 ddbjhtg51.seq 1513 229688682 300711084 ddbjhtg52.seq 1289 228157026 299206507 ddbjhtg53.seq 1771 228730111 299048693 ddbjhtg54.seq 1187 231662415 299051713 ddbjhtg55.seq 1237 231641247 299207034 ddbjhtg56.seq 1034 221152626 300713791 ddbjhtg57.seq 596 106942308 141555448 ddbjhum1.seq 14859 189749313 299163179 ddbjhum2.seq 1653 214116105 299033592 ddbjhum3.seq 1615 223055303 299181470 ddbjhum4.seq 1415 216694041 299066549 ddbjhum5.seq 1468 215039397 299000985 ddbjhum6.seq 1487 213508725 299056992 ddbjhum7.seq 1560 208455525 299061635 ddbjhum8.seq 1682 216760163 299185965 ddbjhum9.seq 1564 213927436 299136075 ddbjhum10.seq 1845 214528032 299117487 ddbjhum11.seq 1938 213605118 299142314 ddbjhum12.seq 38838 160755716 299117579 ddbjhum13.seq 68718 95863450 299006480 ddbjhum14.seq 16017 180970380 299052192 ddbjhum15.seq 2786 220404814 299142500 ddbjhum16.seq 2076 222915586 299063341 ddbjhum17.seq 2519 220672215 299093156 ddbjhum18.seq 4231 216149138 299056998 ddbjhum19.seq 7104 208409086 299001891 ddbjhum20.seq 52997 98394776 299004966 ddbjhum21.seq 32452 126548895 298999960 ddbjhum22.seq 71719 116411986 296530691 ddbjinv1.seq 17201 197105157 299202735 ddbjinv2.seq 1045 194178056 299129711 ddbjinv3.seq 78917 98121349 299003572 ddbjinv4.seq 68354 104347804 299001736 ddbjinv5.seq 94678 85698699 299001717 ddbjinv6.seq 39409 120069491 272864467 ddbjmam1.seq 63580 132719058 299035203 ddbjmam2.seq 15175 18411525 54215080 ddbjpat1.seq 253014 87770034 299000052 ddbjpat2.seq 212254 101235929 299000934 ddbjpat3.seq 178455 122694288 299018754 ddbjpat4.seq 166176 99681636 299000881 ddbjpat5.seq 129443 129571288 299011470 ddbjpat6.seq 164449 103880834 299000551 ddbjpat7.seq 141913 115631573 299002459 ddbjpat8.seq 182985 75074456 299000056 ddbjpat9.seq 131956 70605806 299001056 ddbjpat10.seq 128871 65882542 299001675 ddbjpat11.seq 141601 66680671 299002418 ddbjpat12.seq 167021 68292714 299001132 ddbjpat13.seq 170727 71263905 299001342 ddbjpat14.seq 118612 138297537 299000909 ddbjpat15.seq 169246 98708042 299000423 ddbjpat16.seq 126831 127719934 299000158 ddbjpat17.seq 128074 98408804 298999991 ddbjpat18.seq 156132 71206978 264333495 ddbjphg.seq 2668 16407926 40779650 ddbjpln1.seq 33935 154411443 299086563 ddbjpln2.seq 1775 217617130 299049754 ddbjpln3.seq 46929 137759722 299000803 ddbjpln4.seq 87807 94743981 299002743 ddbjpln5.seq 78741 62301297 299003995 ddbjpln6.seq 34238 88984668 299248794 ddbjpln7.seq 2096 200438747 299252943 ddbjpln8.seq 1865 240389895 340783928 ddbjpln9.seq 8 248890531 315359172 ddbjpln10.seq 49428 128898683 299000268 ddbjpln11.seq 92346 91570077 299181321 ddbjpln12.seq 61549 117014769 302719416 ddbjpln13.seq 58354 120597241 299006288 ddbjpln14.seq 3930 10524817 24998736 ddbjpri1.seq 9898 210533685 299001751 ddbjpri2.seq 28837 91728418 172713898 ddbjrod1.seq 9012 205450428 299348768 ddbjrod2.seq 1104 207413351 299132901 ddbjrod3.seq 1081 208415466 299155523 ddbjrod4.seq 1099 208187710 299198739 ddbjrod5.seq 1166 215464380 299044033 ddbjrod6.seq 1174 216186105 299085741 ddbjrod7.seq 1195 217888843 299075343 ddbjrod8.seq 1180 217932691 299074955 ddbjrod9.seq 1211 222833119 299060880 ddbjrod10.seq 1207 221245490 299091110 ddbjrod11.seq 1158 217392121 299008744 ddbjrod12.seq 35930 166519252 299153449 ddbjrod13.seq 1391 228959767 299047702 ddbjrod14.seq 1490 231674038 299097350 ddbjrod15.seq 36132 146326658 299004109 ddbjrod16.seq 25099 143644325 299001153 ddbjrod17.seq 33618 38639223 120381092 ddbjsts1.seq 96914 44661537 299001109 ddbjsts2.seq 94830 47511148 299002536 ddbjsts3.seq 96165 40533696 299002948 ddbjsts4.seq 64657 38065853 299002129 ddbjsts5.seq 64935 37752139 299003386 ddbjsts6.seq 64667 38122756 299004208 ddbjsts7.seq 66725 46079208 299003243 ddbjsts8.seq 68563 52534065 299004029 ddbjsts9.seq 68572 52188649 299001974 ddbjsts10.seq 77212 48472024 299001491 ddbjsts11.seq 101437 43480784 299001613 ddbjsts12.seq 10796 3178645 23218114 ddbjsyn.seq 22917 32210094 102933550 ddbjuna.seq 207 113109 422698 ddbjvrl1.seq 86383 76892145 299000124 ddbjvrl2.seq 84844 77699367 299001813 ddbjvrl3.seq 83464 80357753 299001755 ddbjvrl4.seq 53624 51226515 185477004 ddbjvrt1.seq 70791 121795807 299002027 ddbjvrt2.seq 21705 192554177 299000030 ddbjvrt3.seq 83750 79751543 299000780 ddbjvrt4.seq 15945 170062716 299039417 ddbjvrt5.seq 1528 230943773 299142819 ddbjvrt6.seq 8521 219960251 299032970 ddbjvrt7.seq 16650 207581297 299054985 ddbjvrt8.seq 27396 58214563 129434166 ------------------------------------------------------------------------------ Total 47741593 52246110341 182906624515 ddbjtpa.seq 4653 15101779 33344534 ddbjcon.seq 346145 0 831771978 The entries and bases in the CON division and TPA dataset are not counted in the numbers given on the top of the release note or 'Total' on the above table.