DNA Data Bank of Japan DNA Database Release 64.0, Dec. 2005, including 52,272,669 entries, 56,098,558,378 bases ------------------------------------------------------------------------------- Table of contents ------------------------------------------------------------------------------- 1. Introduction 1.1. Announcement for changes in the present release 1.2. Announcement for the forthcoming changes 2. DDBJ flat file format 2.1. LOCUS line 2.2. DEFINITION line 2.3. ACCESSION line 2.4. VERSION line 2.5. KEYWORDS line 2.6. SOURCE line 2.7. REFERENCE line 2.8. COMMENT line 2.9. FEATURES line 2.10. BASE COUNT line 2.11. ORIGIN line 3. Dataset categories 3.1. Division categories 3.2. TPA separated from primary dataset 3.3. Notice for patented data 4. DDBJ staff 5. Acknowledgment 6. File Contents 6.1. File categories 6.2. File types 7. Sample of the contents in each file 7.1. Part of the contents in the file 'ddbjbct1.seq' 7.2. Part of the contents in the file 'ddbjbct1.acc' 7.3. Part of the contents in the file 'ddbjbct1.aut' 7.4. Part of the short directory in DDBJ style in the file 'ddbjbct1.dir' 7.5. Part of the contents in the file 'ddbjbct1.idx' 7.6. Part of the contents in the file 'ddbjbct1.jou' 7.7. Part of the contents in the file 'ddbjbct1.key' 7.8. Part of the contents in the file 'ddbjbct1.org' 7.9. Part of the short directory file in DDBJ style in the file 7.10. Part of the accession number index file in the 'ddbjacc1.idx' 7.11. Part of the keyword phrase index file in the 'ddbjkey1.idx' 7.12. Part of the journal citation index file in 'ddbjjou1.idx' 7.13. Part of the gene name index file in 'ddbjgen.idx' 8. Release history 9. File list ------------------------------------------------------------------------------- 1. Introduction This database contains nucleotide sequence data for any organism, not only those with DNA genomes but also those with RNA genomes. This database may be copied and redistributed without permission on the condition that all the statements in this release note are reproduced in each copy. See also '3.3. Notice for patented data' below. The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank (*), and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of November 24, 2005. This unified database was made possible thanks to the international collaboration among the three data banks. All the entries have accordingly been annotated using the feature keys common to them. *'GenBank' is a trademark of NIH, USA, and is operated by National Center for Biotechnology Information (NCBI) at NIH. 1.1. Announcement for changes in the present release Split of index files: In the present release, some of index files (ddbjacc.idx, ddbjjou.idx, and ddbjkey.idx) are greater than 2 GB in the file size. Since the present release, these have been recorded in multiple ddbj****.idx files, each of which at most has 1.5 GB storage capacity as follows, respectively. --------------------------------- ddbjacc1.idx 1499999989 bytes ddbjacc2.idx 538416864 bytes ddbjjou1.idx 1372425924 bytes ddbjjou2.idx 983258250 bytes ddbjkey1.idx 1327274619 bytes ddbjkey2.idx 697086421 bytes --------------------------------- See also 6.2., 7.10., 7.11., 7.12. and 9. below. Retrofit for Feature Table: Definition version 6.4: According to the agreement at the INSD collaborative meeting in 2005, the document, DDBJ/EMBL/GenBank Feature Table: Definition, has been revised on October, 2005. See also '2.9. FEATURES line' below. The revised points have been listed on URL; http://www.ddbj.nig.ac.jp/insdc/icm2005-e.html#ft At DDBJ, the retrofit for this revision has been completed by the present release. Erratum 1: The 52 VRL entries listed below were not included in DDBJ periodical releases from 46 to 63 by our mistake. For the first time, these entries were released as EST data in 2000. Afterwards, they were changed to VRL for some reasons in 2001. After that, they were not included in DDBJ releases as mentioned above. Details are as follows. [Period in which the entries were not included in DDBJ releases] From DDBJ release 46 (July 2001) to release 63 (September 2005) [List of accession numbers] AV645854, AV647986, AV648232, AV648356, AV648363, AV648365, AV648403, AV649170, AV650231, AV650237, AV650382, AV650542, AV650559, AV650569, AV650574, AV650755, AV652229, AV652419, AV653003, AV653661, AV653858, AV653863, AV654892, AV655127, AV655518, AV655864, AV655964, AV656083, AV656226, AV656484, AV657142, AV657612, AV658724, AV660788, AV661024, AV684354, AV688774, AV691500, AV699906, AV718393, AV718553, AV718679, AV718680, AV718704, AV718924, AV719005, AV719365, AV719430, AV719705, AV720124, AV720537, AV720756 [Measures] We reported and apologized to the submitters for our mistake. These 52 entries have been included in the present release. See also the URL; http://www.ddbj.nig.ac.jp/whatsnew/051207-e.html Erratum 2: The 37 PRI entries listed below were included in the HUM division of DDBJ previous release 63 by our mistake. Details are as follows. [Period in which the entries were included in the HUM division of DDBJ release] DDBJ release 63 (September 2005) [List of accession numbers] AF078952, AF083235, AF491227, AF491231, AY078098, AY078099, AY078100, AY078101, AY078102, AY078103, AY078104, AY078105, AY078106, AY078107, AY078108, AY078109, AY078110, AY134884, AY134885, AY134886, AY134887, AY134888, AY134889, AY134890, AY134891, AY219791, AY219792, AY219793, AY219794, AY219795, AY219796, AY219797, AY219798, AY219800, K02914, K02915, U01311 [Measures] These 37 entries have been correctly included in the PRI division of the present release. See also the URL; http://www.ddbj.nig.ac.jp/whatsnew/051228-e.html 1.2. Announcement for the forthcoming changes Nothing particular. 2. DDBJ flat file format The database is a collection of "entry" which is the unit of the data. The entries submitted to databanks were processed and publicized according to the DDBJ format for distribution (flat file). The flat file includes the sequence and the information of submitters, references, source organisms, and "feature" information, etc. The items of the DDBJ flat file are explained at following; ------------------------------------------------------------------------------- LOCUS AB000000 450 bp mRNA linear HUM 08-JUL- 2002 DEFINITION Homo sapiens GAPD mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds. ACCESSION AB000000 VERSION AB000000.1 KEYWORDS . SOURCE Homo sapiens ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 450) AUTHORS Mishima,H. and Shizuoka,T. TITLE Direct Submission JOURNAL Submitted (30-NOV-2000) to the DDBJ/EMBL/GenBank databases. Hanako Mishima, National Institute of Genetics, DNA Data Bank of Japan; Yata 1111, Mishima, Shizuoka 411-8540, Japan (E-mail:mishima@supernig.nig.ac.jp, Tel:81-55-981-6853, Fax:81-55-981-6849) REFERENCE 2 (sites) AUTHORS Mishima,H., Shizuoka,T. and Fuji,I. TITLE Glyceraldehyde-3-phosphate dehydrogenase expressed in human liver JOURNAL Unpublished (2002) COMMENT Human cDNA sequencing project. FEATURES Location/Qualifiers source 1..450 /chromosome="12" /clone="GT200015" /clone_lib="lambda gt11 human liver cDNA (GeneTech. No.20)" /map="12p13" /mol_type="mRNA" /organism="Homo sapiens" /tissue_type="liver" CDS 86..>450 /codon_start=1 /gene="GAPD" /product="glyceraldehyde-3-phosphate dehydrogenase" /protein_id="BAA12345.1" /transl_table=1 /translation="MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFI TTDYMT YMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVTVFGCRNPKEI PWGETSAEFVVEYTG VFTDKDKAVAQLKGGAKKV" BASE COUNT 102 a 119 c 131 g 98 t ORIGIN 1 cccacgcgtc cggtcgcatc gcacttgtag ctctcgaccc ccgcatctca tccctcctct 61 cgcttagttc agatcgaaat cgcaaatggc gaagattaag atcgggatca atgggttcgg 121 gaggatcggg aggctcgtgg ccagggtggc cctgcagagc gacgacgtcg agctcgtcgc 181 cgtcaacgac cccttcatca ccaccgacta catgacatac atgttcaagt atgacactgt 241 gcacggccag tggaagcatc atgaggttaa ggtgaaggac tccaagaccc ttctcttcgg 301 tgagaaggag gtcaccgtgt tcggctgcag gaaccctaag gagatcccat ggggtgagac 361 tagcgctgag tttgttgtgg agtacactgg tgttttcact gacaaggaca aggccgttgc 421 tcaacttaag ggtggtgcta agaaggtctg // ------------------------------------------------------------------------------- 2.1. LOCUS line The format of LOCUS line in the flat file is shown below; --------- -------- Positions Contents --------- -------- 01-05 'LOCUS' 06-12 spaces 13-28 Locus name 29-29 space 30-40 Length of sequence, right-justified 41-41 space 42-43 'bp' 44-47 spaces 48-54 DNA, RNA, mRNA, pre-RNA, rRNA, scRNA, snRNA, snoRNA, tRNA, left justified 55-55 space 56-63 'linear' followed by two spaces, or 'circular' 64-64 space 65-67 The division code (see '3.1. Division categories') 68-68 space 69-79 Date, in the form dd-MMM-yyyy (e.g., 08-JUL-2002) ------------------------------------------------------------------------------ 2.2. DEFINITION line The definition briefly describes the information of gene(s). "DEFINITION" is constructed by each of the three data banks. 2.3. ACCESSION line This line shows accession number of the entry data. A unique accession number is issued to the data submitter by each of the three data banks. The accession number is composed of 1 alphabet character and 5 digits (ex. A12345) or 2 alphabet characters and 6 digits (ex. AB123456). The former style was used in 1980s, but later the latter style was introduced because of data explosion. All the entries designated by the accession numbers with the prefixes given below have been collected and processed by DDBJ, and the rest have been done by GenBank and EMBL/EBI. ------------------------------------------------------------------------------- C, D, E, AB, AG, AK, AP, AT, AU, AV, BA, BB, BD, BJ, BP, BR, BS, BW, BY, CI, CJ, DA, DB, DD, DE ------------------------------------------------------------------------------- If multiple entries are united to an entry, or if an entry is extensively modified after the submission, the responsible data banks may assign a new accession number to it. In these cases, the new accession number is called the primary accession number, and the old accession number(s) is/are called the secondary accession number(s). In the flat file, the primary accession number is indicated first, then the secondary accession number(s) follows. You can find the same updated entry with both the primary and the secondary accession numbers. 2.4. VERSION line This line consists of an accession number and a version number, like "AB123456.1", in which the digit(s) after the period is a version number. The data open to public for the first time is version number as "1". The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. 2.5. KEYWORDS line The data banks describe this line, if necessary. In many cases, the categories of the data (EST, HTG etc.), gene names and product names included in "KEYWORDS". 2.6. SOURCE line This line shows the scientific name on organism from which the sequence is obtained and an organelle type if the sequence is derived from an organelle other than the nucleus. 2.7. REFERENCE line The information on the submitters and references related to the submitted sequence is indicated in REFERENCE line. 2.8. COMMENT line. The information about an entry that can not be described using FEATURES or the other fields. 2.9. FEATURES line Biological features of a submitted sequence data are described with "Feature" key (the biological nature of the annotated feature), "Location" (the region of the sequence which corresponds to Feature), and "Qualifier" (supplementary information about Feature). The "Feature" and "Qualifier" keys used in the present release is defined by DDBJ/EMBL/GenBank Feature Table: Definition (Version 6.4 October, 2005). The document is continuously updated every half year. You can find its newest version on URL; http://www.ddbj.nig.ac.jp/FT/full_index.html 2.10. BASE COUNT line In the BASE COUNT line of the DDBJ flat file, 9 digits are allocated for each number of a (adenine), c (cytosine), g(guanine) and t (thymine). In the case of RNA sequence, uracil is indicated as "t" according to the rule of the international nucleotide database. In accordance with the relaxation of sequence length limitation, GenBank had already dropped the BASE COUNT line from their flat file format from GenBank Release 138 (Oct. 2003). DDBJ has decided to maintain the BASE COUNT line in our flat file format from the view that GC contents are still important information to characterize the sequence. 2.11. ORIGIN line The sequence data starts from the next line of ORIGIN. The sequence is indicated as lower case letters, delimited by space per 10 bases, starts a new line by 60 bases. The numbers described at left side of lines mean the ordinal number of the top base of the line. 3. Dataset categories There have been a number of genome projects going on worldwide. Among them human genome projects have probably been most productive and yielded a large number of ordinary sequences, huge amounts of genome sequences and EST (expressed sequence tags). Thus, we DDBJ have the human (HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences, while PRI division of GenBank database contains human sequences too. Note that the other divisions such as EST, GSS, and HTC may also contain human sequences. The present release is divided into 21 categories of organisms and others. See also '6.1. File categories' and '9. File list' below. The contents of the 21 categories are shown in the following. 3.1. Division categories The first 20 divisions are given below; HUM; human PRI; primates (other than human) ROD; rodents MAM; mammals (other than primates and rodents) VRT; vertebrates (other than mammals) INV; invertebrates (animals other than vertebrates) PLN; plants, fungi, plastids (eukaryotes other than animals) BCT; bacteria (including both Eubacteria and Archaea) VRL; viruses PHG; bacteriophages ENV; sequences obtained via environmental sampling methods SYN; synthetic constructs EST; expressed sequence tags; short single pass cDNA sequences GSS; genome survey sequences; short single pass genomic sequences HTC; high throughput cDNA sequences; The sequence submitted from full length cDNA sequencing projects. This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. HTG; high throughput genomic sequences The sequence submitted mainly from genome sequencing projects which regarded a clone as a sequencing unit. STS; sequence tagged sites The tag site for genome sequencing. The information of chromosome, map, PCR_condition is mandatory for this division. PAT; patented data The data submitted to JPO (Japan Patent Office), EPO (European Patent Office), or USPTO (United States Patent and Trademark Office). See also '3.3. Notice for patented data' in below. UNA; the data not annotated The UNA division is not used for recently submitted sequences. CON; Contig / Constructed To conjugate a series of entries, such as those submitted from a genome project, each of data banks constructs an entry and assign an accession number to a large scale sequence dataset. Such entries are classified into the CON division. The entry in the CON division has the information of joined accession numbers instead of the sequence data. The corresponding entries of the CON entry have been submitted to other divisions. The entries and bases in the CON division are not counted in the released numbers given on the top of the release note. 3.2. TPA separated from primary dataset TPA (Third Party Annotation) data are also available. The TPA data are a complement to the existing DDBJ/EMBL/GenBank comprehensive database of primary nucleotide sequences, which typically result from direct sequencing of cDNAs, ESTs, genomic DNAs etc. Primary entries are defined to be data for which the submitting group has done the sequencing and annotation, and as 'owner' of these data has privileges to submit updates/corrections etc. Primary entries used to build a TPA sequence are those that have been experimentally determined and are publicly available in the DDBJ/EMBL/GenBank databases. They may not be from a proprietary database. The entries and bases in TPA are not counted in the released numbers given on the top of the release note. 3.3. Notice for patented data This release includes PAT division for patented data as described above. The patented data are those which the Japanese Patent Office (JPO), United States Patent and Trademark Office (USPTO), and the European Patent Office (EPO) collected, processed and released. The prefixes of accession numbers for the patented data are shown below; ----------------------- JPO : E, BD, DD USPTO: I, AR EPO : A, AX, CQ, CS ----------------------- Note also that unauthorized use of the patented data may cause legal issues for which DDBJ takes no responsibility. 4. DDBJ staff This release is published by the following DDBJ staff. Gojobori T, Tateno Y, Nishikawa K, Sugawara H, Saitou N, Okubo K, Ikeo K, Suzuki Y, Fukuchi S, Kinjo A, Barrero R, Abe T, Sumiyama K, Aono H, Atsumi T, Ejima M, Fukuda D, Gojobori M, Hikino Y, Hirai T, Honda K, Hoshi N, Ichikawa K, Ishida K, Kato T, Kawamoto T, Kohira J, Koike T, Kosuge T, Kusakabe A, Kuwana Y, Li C, Lin Y, Maesako H, Mamiya K, Maruyama N, Mashima J, Miyazawa S, Mizunuma T, Murakata N, Nagira S, Nagura M, Nishida S, Nishinomiya N, Nozaki A, Okido T, Sakai K, Shigemoto Y, Shiozawa H, Sugiyama F, Suzuki S, Tsuboi M, Tsutsui H, Yamamoto M, and Yokoyama E Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Research Organization of Information and Systems Mishima 411-8540, Japan Phone: +81 55 981 6853 FAX: +81 55 981 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp/ (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp/ (for DDBJ sequence data submission system) 5. Acknowledgment We are grateful to NCBI and EMBL/EBI for a firm friendship and an excellent collaboration with us. We also thank the Japanese Patent Office for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ uses the Super-SINET computer network for data collection, data exchange and various services. 6. File Contents 6.1. File categories This release covers 21 categories (see also '3. Dataset categories'.) of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct*** Category for bacteria ddbjcon*** Category for CON (contig sequences) ddbjenv*** Category for ENV (environmental samples) ddbjest*** Category for EST (expressed sequence tags) ddbjgss*** Category for GSS (genome survey sequences) ddbjhtc*** Category for HTC (high throughput cDNA sequences) ddbjhtg*** Category for HTG (high throughput genomic sequences) ddbjhum*** Category for human ddbjinv*** Category for invertebrates ddbjmam*** Category for mammals other than primates and rodents ddbjpat*** Category for patents ddbjphg*** Category for phages ddbjpln*** Category for plants ddbjpri*** Category for primates other than human ddbjrod*** Category for rodents ddbjsts*** Category for STS (sequence tagged sites) ddbjsyn*** Category for synthetic DNAs ddbjtpa*** Category for TPA (Third Party Annotation) ddbjuna*** Category for unannotated sequences ddbjvrl*** Category for viruses ddbjvrt*** Category for vertebrates other than mammals ------------------------------------------------------------------------------ Some of above in the present release are recorded in multiple ddbj***.seq files, each of which at most has 300 MB storage capacity as follows, respectively. --------------------- ddbjbct : 11 files ddbjenv : 2 files ddbjest : 360 files ddbjgss : 130 files ddbjhtc : 7 files ddbjhtg : 58 files ddbjhum : 23 files ddbjinv : 7 files ddbjmam : 2 files ddbjpat : 19 files ddbjpln : 14 files ddbjpri : 2 files ddbjrod : 19 files ddbjsts : 12 files ddbjvrl : 4 files ddbjvrt : 8 files --------------------- 6.2. File types The index files included in this release are ddbjacc#.idx, ddbjgen.idx, ddbjjou#.idx, and ddbjkey#.idx. All of them except ddbjgen.idx are recorded in multiple ddbj****.idx files, each of which at most has 1.5 GB storage capacity. We have also included a program by which to make the index files not presented in this release. For the use of the program, see the files, seq2indexes.doc, seq2indexes.c, and seq2indexes.h in this release. Each category then has the following nine types of files. Note that all the files except for ddbj***.seq are created by the user by use of seq2indexes as mentioned above. ------------------------------------------------------------------------------ ddbj***.seq List of an entry in DDBJ format, see 7.1. ddbj***.acc List of the accession numbers, see 7.2. ddbj***.aut List of the authors, see 7.3. ddbj***.dir List of the short directory in DDBJ style, see 7.4. ddbj***.idx List of indices, see 7.5. ddbj***.jou List of the journals, see 7.6. ddbj***.key List of the key words, see 7.7. ddbj***.org List of the species names, see 7.8. ddbj***.sdr List of the short directory in DDBJ style, see 7.9. ------------------------------------------------------------------------------ 7. Sample of the contents in each file 7.1. Part of the contents in the file 'ddbjbct1.seq' This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA linear BCT 14-APR- 2000 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Miki Jishage, National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail:mjishage@lab.nig.ac.jp, Tel:0559-81-6742, Fax:0559-81-6746) REFERENCE 2 (bases 1 to 993) AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol. Gen. Genet. 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /mol_type="mRNA" /organism="Escherichia coli" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /transl_table=11 /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEP SDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVAS RRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW WIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPV DDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKW LFELNAK" variation 75 /citation=[3] /replace="t" variation 97 /citation=[3] /replace="t" variation 99 /citation=[3] /replace="t" variation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ 7.2. Part of the contents in the file 'ddbjbct1.acc' The first column refers to the secondary accession number, second column to the locus name, and third to the primary accession number. The primary number may be the same as the secondary number. They are arranged in the ascending order of the secondary accession numbers. ------------------------------------------------------------------------------ D00681 -> AB028210 AB028210 D10012 -> AB010832 AB010832 D10013 -> AB010832 AB010832 D10048 -> AB008452 AB008452 D13563 -> AB018435 AB018435 D13614 -> AB006206 AB006206 D13762 -> AB063629 AB063629 D14537 -> AB040412 AB040412 D14604 -> AB001637 AB001637 D14607 -> AB027308 AB027308 ------------------------------------------------------------------------------ 7.3. Part of the contents in the file 'ddbjbct1.aut' For each author name given on the left to the arrow, the corresponding locus name and primary accession number are respectively listed on the right. They are arranged in the alphabetical order of the author names. ------------------------------------------------------------------------------ Aarestrup,F.M.Threlfall,E.J. -> AF393510 AF393510 Aarnikunnas,J. -> AY090766 AY090766 Aarnio,T. -> AY792975 AY792975 Aarnio,T. -> AY792976 AY792976 Aarnio,T. -> AY792977 AY792977 Aarnio,T. -> AY792978 AY792978 Aarnio,T. -> AY792979 AY792979 Aarnio,T. -> AY792980 AY792980 Aarnio,T. -> AY792981 AY792981 Aarnio,T. -> AY792982 AY792982 ------------------------------------------------------------------------------ 7.4. Part of the short directory in DDBJ style in the file 'ddbjbct1.dir' For each locus name given in the first column, the corresponding primary accession number, molecular type, number of nucleotide pairs, and description for the locus are respectively listed. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ AAC133631 AJ133631 DNA 1482 Alicyclobacillus acidoterrestris 16S rRNA gene, strain DSM 3922T. AAC133789 AJ133789 DNA 3097 Alicyclobacillus acidocaldarius cyclomaltodex trinase gene region. AAC243194 AJ243194 DNA 1720 Alicyclobacillus acidocaldarius kdpA gene. AAC252160 AJ252160 DNA 1638 Alicyclobacillus acidocaldarius cysA gene for putative ABC-transporter ATP-binding protein. AAC252161 AJ252161 DNA 8690 Alicyclobacillus acidocaldarius maltose/maltodextrine transport gene region (malEFGR genes, cdaA gene and glcA gene). AAC289685 AJ289685 DNA 453 Actinobacillus actinomycetemcomitans partial infB gene for translation initiation factor IF2, strain CCUG13227 T (ATCC33384, NCTC9710). AAC289686 AJ289686 DNA 453 Actinobacillus actinomycetemcomitans partial infB gene for translation initiation factor IF2, strain HK666. AAC289687 AJ289687 DNA 453 Actinobacillus actinomycetemcomitans partial infB gene for translation initiation factor IF2, strain HK1662. AAC289694 AJ289694 DNA 453 Actinobacillus actinomycetemcomitans partial infB gene for translation initiation factor IF2, strain HK1651. ------------------------------------------------------------------------------ 7.5. Part of the contents in the file 'ddbjbct1.idx' The first column refers to the locus name, second column to the starting site of the locus in byte, and third to its ending site in byte. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ %***************************** #AAC133631 1125664347 1125667802 #AAC133789 1125786300 1125794416 #AAC243194 1136871421 1136876093 #AAC252160 1146107711 1146112332 #AAC252161 1146112333 1146131350 #AAC289685 1155353186 1155356047 #AAC289686 1155356048 1155358781 #AAC289687 1155358782 1155361517 #AAC289694 1155377972 1155380768 #AAC308623 1167555889 1167560983 ------------------------------------------------------------------------------ 7.6. Part of the contents in the file 'ddbjbct1.jou' This gives information on the journal in which sequence data were published. ------------------------------------------------------------------------------ Yi Chuan Xue Bao 29 (12), 1111-1117 (2002) -> AY601668 AY601668 Yi Chuan Xue Bao 29 (12), 1111-1117 (2002) -> AY603420 AY603420 Yi Chuan Xue Bao 30 (4), 364-369 (2003) -> AF526379 AF526379 Yonsei Med. J. 39 (6), 520-525 (1998) -> AF373217 AF373217 Yonsei Med. J. 39 (6), 520-525 (1998) -> AF373218 AF373218 Z. Lebensm.-Unters. -Forsch., A Eur. Food Res. Technol. 209, 83-87(1999). -> ABA 7623 AJ007623 Z. Lebensm.-Unters. -Forsch., A Eur. Food Res. Technol. 209, 83-87(1999). -> ABA 7624 AJ007624 Zb. Bioteh. Fak. Univ. Ljubl. Kmet. Supl. 79(1), 107-113(2002). -> ASP012466 AJ 012466 Zb. Bioteh. Fak. Univ. Ljubl. Kmet. Supl. 79(1), 19-26(2002). -> ASP012466 AJ01 2466 Zentralbl. Bakteriol. 286 (1), 1-8 (1997) -> AF192489 AF192489 Zentralbl. Bakteriol. 290, 37-49(2000). -> LPN7311 AJ007311 Zentralbl. Bakteriol. 291, 345-352(2001). -> LPN300467 AJ300467 Zentralbl. Bakteriol. 292, 207-214(2002). -> ECO459584 AJ459584 Zhi Wu Bao Hu Xue Hui Hui Kan 44, 233-244 (2002) -> AF540014 AF540014 Zhi Wu Bing Li Xue Bao 34 (1), 80-85 (2004) -> AY447045 AY447045 Zhi Wu Bing Li Xue Hui Kan 12, 57-64 (2003) -> AF450275 AF450275 Zhiwu Baohuxue Hui Huikan 44, 185-208 (2002) -> AY122057 AY122057 Zhiwu Binglixue Huikan 6, 207-208 (1997) -> AF149819 AF149819 Zhongguo Jiaqin 25 (Supplement 1), 60-71 (2003) -> AY615358 AY615358 Zhongguo Kang Sheng Su Za Zhi 21, 94-97 (2003) -> AY293073 AY293073 Zhongguo Kang Sheng Su Za Zhi 28, 96-100 (2003) -> AY293071 AY293071 Zhongguo Kang Sheng Su Za Zhi 28, 96-100 (2003) -> AY293072 AY293072 Zhongguo Lin Chuang Yao Li Xue Za Zhi 19, 190-195 (2003) -> AY536040 AY536040 Zhongguo Nong Ye Ke Xue 36(1), 17-25 (2003) -> AY555768 AY555768 Zhonghua Liu Xing Bing Xue Za Zhi 24, 291-295 (2003) -> AY279003 AY279003 Zhonghua Min Guo Wei Sheng Wu Ji Mian Yi Xue Za Zhi (2003) In press -> AY299484 AY299484 Zhonghua Min Guo Wei Sheng Wu Ji Mian Yi Xue Za Zhi 22 (5), 489-492 (2002) -> AY 382160 AY382160 Zool. Sci. 14, 701-706 (1997) -> AB002286 AB002286 Zool. Sci. 14, 701-706 (1997) -> AB002287 AB002287 Zool. Sci. 14, 701-706 (1997) -> AB002288 AB002288 Zool. Sci. 14, 701-706 (1997) -> AB002289 AB002289 Zool. Sci. 14, 701-706 (1997) -> AB002290 AB002290 Zool. Sci. 14, 701-706 (1997) -> AB002291 AB002291 Zoolog. Sci. 17, 983-989 (2000) -> AB038366 AB038366 Zoolog. Sci. 17, 983-989 (2000) -> AB038367 AB038367 Zoolog. Sci. 17, 983-989 (2000) -> AB038368 AB038368 Zoolog. Sci. 17, 983-989 (2000) -> AB038369 AB038369 Zoolog. Sci. 17, 983-989 (2000) -> AB038370 AB038370 ------------------------------------------------------------------------------ 7.7. Part of the contents in the file 'ddbjbct1.key' For the locus and accession number respectively given on the right to the arrow, the corresponding keywords are listed on the left. ------------------------------------------------------------------------------ Synechococcus sp. DNA for intrinsic membrane protein, malK-like protein, cyanase, complete cds. -> AB000100 AB000100 cynS; cyanase; cynD; malK-like protein; cynB; intrinsic membrane protein. -> AB000100 AB000100 Direct Submission -> AB000100 AB000100 Identification and nitrogen regulation of the cyanase gene from the cyanobacteri a Synechocystis sp. strain PPC 6803 and Synechococcus sp. strain PPC 7942 -> AB000100 AB000100 Sequence updated (31-Mar-1997) by: Tatsuo Omata Sequence updated (14-Aug-1997) -> AB000100 AB000100 Sphingomonas sp. 16S ribosomal RNA. -> AB000106 AB000106 16S rRNA. -> AB000106 AB000106 Direct Submission -> AB000106 AB000106 Sphingomonas sp. VT1 16s rRNA -> AB000106 AB000106 Synechococcus sp. gene for ribosomal proteins, complete cds. -> AB000111 AB000111 tRNA pseudouridine synthase I; 50S ribosomal protein L17; DNA-dircted RNA polymerase alpha chain; 30S Ribosomal Protein S11; 30S ribosomal protein S13; 50S ribosomal protein L36; adenylate kinase; preprotein translocase SecY subunit; 50S ribosomal protein L15; 30S ribosomal protein S5; 50S ribosomal protein L18; 50S ribosomal protein L6; 30S ribosomal protein S8; 50S ribosomal protein L5; 50S ribosomal protein L24; 50S ribosomal protein L14; 30S ribosomal protein S17; 50S ribosomal protein L29; 50S ribosomal protein L16; 30S ribosomal protein S3; 50S ribosomal protein L22; 30S ribosomal protein S19; 50S ribosomal protein L2; 50S ribosomal protein L23; 50S ribosomal protein L4; 50S ribosomal protein L3. -> AB000111 AB000111 Direct Submission -> AB000111 AB000111 ------------------------------------------------------------------------------ 7.8. Part of the contents in the file 'ddbjbct1.org' For the locus and accession number respectively given on the right to the arrow, the corresponding taxonomic names are listed on the left. They are arranged in the alphabetical order of the species names. ------------------------------------------------------------------------------ 'Flavobacterium' lutescens 'Flavobacterium' lutescens Bacteria; Proteobacteria; gamma subdivision; Pseudomonadaceae; Pseudomonas. -> AB035478 AB035478 'Flavobacterium' lutescens 'Flavobacterium' lutescens Bacteria; Proteobacteria; gamma subdivision; Pseudomonadaceae; Pseudomonas. -> AB042983 AB042983 'Fragaria multicipita' phytoplasma 'Fragaria multicipita' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF036354 AF036354 'Fragaria multicipita' phytoplasma 'Fragaria multicipita' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF190224 AF190224 'Fragaria multicipita' phytoplasma 'Fragaria multicipita' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF190225 AF190225 'Helichrysum bracteatum' phytoplasma 'Helichrysum bracteatum' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF515771 AF515771 'Momordica charantia' phytoplasma 'Momordica charantia' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> PHY431368 AJ431368 'Rehmannia glutinosa var. purpurea' phytoplasma 'Rehmannia glutinosa var. purpurea' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF335107 AF335107 'Rhizomonas' sp. 'Rhizomonas' sp. Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. -> UBA132327 AJ132327 'Vinca minor' phytoplasma 'Vinca minor' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AY144608 AY144608 ------------------------------------------------------------------------------ 7.9. Part of the short directory file in DDBJ style in the file 'ddbjbct1.sdr' The short directory file contains brief descriptions of all of the sequence entries contained in the DDBJ style. ------------------------------------------------------------------------------ AC133631 Alicyclobacillus acidoterrestris 16S rRNA gene, strain DSM 1482bp AAC133789 Alicyclobacillus acidocaldarius cyclomaltodextrinase gene 3097bp AAC243194 Alicyclobacillus acidocaldarius kdpA gene. 1720bp AAC252160 Alicyclobacillus acidocaldarius cysA gene for putative 1638bp AAC252161 Alicyclobacillus acidocaldarius maltose/maltodextrine 8690bp AAC289685 Actinobacillus actinomycetemcomitans partial infB gene for 453bp AAC289686 Actinobacillus actinomycetemcomitans partial infB gene for 453bp AAC289687 Actinobacillus actinomycetemcomitans partial infB gene for 453bp AAC289694 Actinobacillus actinomycetemcomitans partial infB gene for 453bp AAC308623 Alicyclobacillus acidocaldarius celA gene for cellulase. 1778bp AAC417690 Actinobacillus actinomycetemcomitans mukB gene. 4491bp AAC419840 Acetobacter aceti 16S rRNA gene, strain LMG 1531. 1440bp AAC430786 Actinobacillus actinomycetemcomitans partial fur gene for 1246bp AAC493667 Alicyclobacillus acidocaldarius subsp. rittmannii 16S rRNA 1472bp AAC496806 Alicyclobacillus acidocaldarius 16S rRNA gene, strain DSM 1507bp ------------------------------------------------------------------------------ In addition to the tables for the four following index files are included in this release. These files were prepared for BCT, ENV, EST, GSS, HTC, HTG, HUM, INV, MAM, PAT, PHG, PLN, PRI, ROD, STS, SYN, UNA, VRL, and VRT divisions. Accession number index file Keyword phrase index file Journal citation index file Gene name index file A brief description is given for each file in the above section, '3. Dataset categories'. 7.10. Part of the accession number index file in the 'ddbjacc1.idx' The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00001 ECPBPA BCT X04516 D00002 ECPYRC BCT X04469 D00003 HUMP450M HUM D00003 D00004 FLBFLBL40 VRL D00004 D00005 IBAMEM682 VRL D00005 D00006 BACPNS1981 BCT D00006 D00007 CHKCALGRP VRT D00007 D00008 ECPNTAB BCT X04195 D00009 DROPER1 INV D00009 ------------------------------------------------------------------------------ 7.11. Part of the keyword phrase index file in the 'ddbjkey1.idx' Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ "COAT PROTEIN SMO511347 VRL AJ511347 'TNPA GENE UBA564903 BCT AJ564903 'ZINC-FINGER' MOTIF PRNS53 VRL X60546 (+) MATING TYPE SURFACE PROTEIN ABGPSSP PLN M94861 (1,3 TABETGLUB PLN Z22874 (1,3)-BETA-D-GLUCAN BINDING PROTEIN AJ606470 INV AJ606470 (1,3)BETA-GLUCAN SYNTHASE NCU09275 PLN U09275 (1,4)-BETA-D-ARABINOXYLAN ARABINOFURANOHYDROLASE ANAXHA PLN Z78011 ANTUAXHA PLN Z78010 (1,6)-BETA-GLUCAN BIOSYNTHESIS YSAKRE1A PLN M81588 (1-3)-BETA-GLUCANASE NTSP41AGN PLN X81560 PA13BGPT PLN X57794 (1-3,1-4)-BETA-D-GLUCANASE HVBDG PLN X52572 (1-4)-BETA-MANNAN ENDOHYDROLASE CAR278996 PLN AJ278996 CAR293305 PLN AJ293305 (2',5'-OLIGOISOADENYLATE SYNTHETASE-DEPENDENT) AL138776 HUM AL138776 (2'-5') OLIGO(A) SYNTHASE E16 SSO4G06 EST F14610 (2'-5')OLIGOADENYLATE SYNTHETASE HSA225089 HUM AJ225089 HUMSYN25A HUM D00068 SSA225090 MAM AJ225090 (6')-IB' AMINOGLYCOSIDE ACETYLTRANSFERASE AXY278514 BCT AJ278514 PAE291609 BCT AJ291609 (8,11)-LINOLEOYL DESATURASE COF245938 PLN AJ245938 ------------------------------------------------------------------------------ 7.12. Part of the journal citation index file in 'ddbjjou1.idx' The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ (ER) AAPS PHARMSCI. 4 (3), DOI 10.1208/PS040315 (2002) AY170916 ROD AY170916 (ER) AM. J. HUM. GENET. 76 (1) (2004) IN PRESS AY753209S1 HUM AY753209 AY753209S2 HUM AY753210 (ER) ARCH. VIROL. (2004) IN PRESS AF531505 VRL AF531505 AY518899 VRL AY518899 AY518900 VRL AY518900 AY518901 VRL AY518901 AY518902 VRL AY518902 AY518903 VRL AY518903 AY518904 VRL AY518904 AY518905 VRL AY518905 AY518906 VRL AY518906 AY518907 VRL AY518907 AY518908 VRL AY518908 AY518909 VRL AY518909 AY518910 VRL AY518910 AY518911 VRL AY518911 AY518912 VRL AY518912 AY518913 VRL AY518913 AY518914 VRL AY518914 AY518915 VRL AY518915 AY518916 VRL AY518916 AY518917 VRL AY518917 AY518918 VRL AY518918 AY518919 VRL AY518919 AY518920 VRL AY518920 AY518921 VRL AY518921 AY518922 VRL AY518922 AY518923 VRL AY518923 AY518924 VRL AY518924 AY518925 VRL AY518925 AY518926 VRL AY518926 AY518927 VRL AY518927 AY518928 VRL AY518928 AY518929 VRL AY518929 AY518930 VRL AY518930 AY518931 VRL AY518931 AY518932 VRL AY518932 AY521234 VRL AY521234 AY521235 VRL AY521235 AY521236 VRL AY521236 AY521237 VRL AY521237 AY521238 VRL AY521238 (ER) ARTERIOSCLER. THROMB. VASC. BIOL. (2004) IN PRESS AY563557 HUM AY563557 (ER) BIOCHEM. BIOPHYS. RES. COMMUN. 325 (1), 203-214 (2004) AY563137 HUM AY563137 (ER) BIOCHEM. J./10.1042/BJ20030293 HSA496460 HUM AJ496460 ------------------------------------------------------------------------------ 7.13. Part of the gene name index file in 'ddbjgen.idx' This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ 'ARR BX927156 BCT BX927156 'BGLG BX927156 BCT BX927156 'BGLS BX927148 BCT BX927148 'BGLY' BX927156 BCT BX927156 'BRNQ AF305888 BCT AF305888 'COMK AL591983 BCT AL591983 AL596172 BCT AL596172 'CRCB BX927155 BCT BX927155 'CRTI BX927155 BCT BX927155 'DPPE LDDIPEP BCT Z34898 'FIC BX936398 BCT BX936398 ------------------------------------------------------------------------------ 8. Release history Release Date Entries Bases Comments 64 12/05 52,272,669 56,098,558,378 63 09/05 47,741,593 52,246,110,341 62 06/05 45,249,444 49,158,155,283 ENV started Version for release note started 61 03/05 43,118,204 47,099,081,750 Changed style of release note 60 12/04 40,583,945 44,416,752,273 /db_xref="H-inv:**" started 59 09/04 37,926,117 42,245,956,937 58 06/04 34,917,581 39,812,635,108 57 03/04 32,693,678 38,008,449,840 56 12/03 30,405,173 36,079,046,032 55 09/03 27,753,140 34,280,225,489 54 06/03 25,149,821 32,162,041,177 53 02/03 23,250,813 29,711,299,332 52 12/02 20,354,812 26,931,456,316 51 09/02 18,401,358 22,782,404,136 TPA started 50 06/02 17,260,693 20,158,357,982 49 04/02 16,503,157 18,579,627,226 48 01/02 15,016,100 16,197,713,855 47 10/01 13,266,610 14,145,671,645 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------ Since release 62 ------------------ Release version number is introduced: DDBJ has started to include the item, 'version', for its release note, which indicates a version for its periodical release. It is expressed like '62.0', in which the digit(s) after the period is a version number. The reason for adding the version number is that a released data is sometimes revised due to urgent and necessary corrections. The number is increased by one every time when a revised periodical release is made public until the next release. Introduction of ENV division: Recently, the submissions of the sequences derived from environmental samples have rapidly increased. To accommodate such submissions, a new division, ENV, has been created (See also '3.1. Division categories'). This division contains the sequences obtained via direct molecular isolation such as PCR, DGGE, or any anonymous method. In the past, the sequences derived from environmental samples belonged to taxonomic divisions, mainly BCT. At DDBJ, the retrofit to transfer relevant entries from taxonomic divisions to the ENV division starts in the present release, and ends by the next periodical release. Please note that during this transitional period, some entries to be eventually placed in the ENV division will be found in other divisions. Strand information is removed: The strand information of LOCUS line in the flat file has been removed as shown below. See also '2.1. LOCUS line'. ---------------------------------------------------------------------------- Old (-rel. 61): 44-44 space 45-47 spaces, ss- (single-stranded), ds- (double-stranded), or ms- (mixed-stranded) New (rel. 62-): 44-47 spaces ---------------------------------------------------------------------------- ------------------ Since release 61 ------------------ The style of release note (this file) has been changed. Some entries have the sequential format for the secondary accession numbers in the ACCESSION line, in order to make the expression of secondary accession numbers in the past short. For example; ------------------------------------------------------------------------------ Before; ACCESSION AB000802 D85885 D85886 D85887 After; ACCESSION AB000802 D85885-D85887 ------------------------------------------------------------------------------ See also '2.3. ACCESSION line'. ------------------ Since release 60 ------------------ The cross-reference to the H-invitational has been included. ------------------ Since release 56 ------------------ The three data banks have agreed that the maximum length limitation (350 kb) of a submitted sequence be relaxed. The BASE COUNT line of the DDBJ flat file format has been changed, corresponding to the relaxation of the maximum sequence length restriction in the entry that had been practiced at DDBJ/EMBL/GenBank International Nucleotide Sequence Databases. In the BASE COUNT line of the DDBJ flat file, 6 digits had been allocated for each number of a, c, g, t and other bases in the sequence. Hereafter, in the new flat file format, 9 digits are allocated for each number of a, c, g and t, while the numbers of other bases are removed. In accordance with the relaxation of sequence length limitation, GenBank had already dropped the BASE COUNT line from their flat file format from GenBank Release 138 (Oct. 2003). We DDBJ have decided to maintain the BASE COUNT line in our flat file format from the view that GC contents are still important information to characterize the sequence. The changes in the BASE COUNT line are shown below. ---------------------------------------------------------------------------- Old (-rel. 55): 1 6 11 16 21 26 31 36 41 46 51 56 61 66 71 |----|----|----|----|----|----|----|----|----|----|----|----|----|----| BASE COUNT 123456 a 123456 c 123456 g 123456 t 123456 others New (rel. 56-): 1 6 11 16 21 26 31 36 41 46 51 56 61 66 71 |----|----|----|----|----|----|----|----|----|----|----|----|----|----| BASE COUNT 123456789 a 123456789 c 123456789 g 123456789 t ---------------------------------------------------------------------------- The SOURCE in the flat file is revisited and revised if necessary in accordance with the unified taxonomy database common to the three data banks. ------------------ Since release 54 ------------------ '/sequenced_mol' qualifier has been changed to '/mol_type' qualifier. We accordingly completed retrofitting the pertinent entries. This change was made on the agreement at the INSD collaborative meeting in 2002. ------------------ Since release 51 ------------------ The TPA (Third Party Annotation) dataset has been available. The dataset is a complement to the existing DDBJ/EMBL/GenBank database of the primary nucleotide sequences which were obtained from direct sequencing of cDNAs, ESTs, genomic DNAs etc. The format of LOCUS line in the flat file has been changed as shown below to adjust to the GenBank format. ------------------------------------------------------------------------------ Old (-rel. 50): LOCUS AB000001 660 bp DNA PLN 01-FEB-2001 New (rel. 51-): LOCUS AB000001 660 bp DNA linear PLN 01-FEB- 2001 ------------------------------------------------------------------------------ ------------------ Since release 45 ------------------ The HTC (High Throughput cDNA) division has been included. This is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. ------------------ Since release 41 ------------------ The CON division has been included. This division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. ------------------ Since release 40 ------------------ The RNA division was terminated. The RNA data have been redistributed according to the category of the organism. Therefore, you will find a human RNA sequence, for example, in the HUM division. ------------------ Since release 37 ------------------ The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence. It is expressed like AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. ------------------ Since release 31 ------------------ We have started adopting the unified taxonomy database to unify the biological source of the sequence. The database is made up with scientific names, ID of unidentified organisms, and synthetic constructs etc. ------------------ Since release 30 ------------------ NID and PID were terminated. This change was made on the agreement at the INSD collaborative meeting in 1999. ------------------ Since release 28 ------------------ The HTG (High Throughput Genomic sequence) has been included. This division was created to cope with genome project teams which deal with a clone as a sequencing unit. We terminated the ORG (Organelle) division. Thus, if you are interested in human mitochondrial sequences, for example, you are now advised to refer to the HUM division. ------------------ Since release 27 ------------------ The GSS division has been included. GSS stands for Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. ------------------ Since release 25 ------------------ DDBJ release contains amino acid sequences that were translated from the corresponding nucleotide sequences of the database. In the translation we paid much attention to the fact that some species or organella have a codon different from the universal one, and used the proper codon table. ------------------ Since release 22 ------------------ The HUM division has been included. Human genome projects have probably been most productive and yielded a large number of sequences Thus, we have the human (HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. ------------------ Since release 12 ------------------ The EST (Expressed Sequence Tag) division has been included. The number of ESTs has been increasing at an enormous rate and is expected to be growing even more rapidly in the future. Thus, we created a division for ESTs ------------------ Since release 10 ------------------ The sequences submitted to GenBank or EMBL have been included in the release. 9. File list The files in this release are arranged in the following order with non-labeled format. ----------------------------------------------------------------------- file name file size ----------------------------------------------------------------------- ddbjrel.txt (DDBJ release note) 106400 ddbjacc1.idx (Accession number index file 1) 1499999989 ddbjacc2.idx (Accession number index file 2) 538416864 ddbjgen.idx (Gene name index file) 81362128 ddbjjou1.idx (Journal citation index file 1) 1372425924 ddbjjou2.idx (Journal citation index file 2) 983258250 ddbjkey1.idx (Keyword phrase index file 1) 1327274619 ddbjkey2.idx (Keyword phrase index file 2) 697086421 ----------------------------------------------------------------------- file name number of entries number of bases file size ----------------------------------------------------------------------- ddbjbct1.seq 26217 123269328 299024901 ddbjbct2.seq 5783 130891983 299331942 ddbjbct3.seq 4937 133929581 299002775 ddbjbct4.seq 65740 105261697 299000330 ddbjbct5.seq 19704 123135096 299003379 ddbjbct6.seq 54359 114198567 300648327 ddbjbct7.seq 217 128806332 299244176 ddbjbct8.seq 91 136519426 305997822 ddbjbct9.seq 90 133898798 302609101 ddbjbct10.seq 49904 114533693 299029620 ddbjbct11.seq 158 2990258 7047510 ddbjenv1.seq 112629 83471842 299001241 ddbjenv2.seq 85109 71966909 231956738 ddbjest1.seq 89038 33659276 299001113 ddbjest2.seq 94317 37755215 299000822 ddbjest3.seq 94312 36782268 299000335 ddbjest4.seq 89533 28295296 299001222 ddbjest5.seq 93269 35791981 299001110 ddbjest6.seq 96785 38402784 299001651 ddbjest7.seq 97673 37699761 299002524 ddbjest8.seq 97341 37574284 299002440 ddbjest9.seq 96945 38317873 299001957 ddbjest10.seq 99049 38944819 299001781 ddbjest11.seq 96697 38396786 299001672 ddbjest12.seq 95613 42563277 299000352 ddbjest13.seq 102724 42256164 299002260 ddbjest14.seq 101494 40489787 298999928 ddbjest15.seq 97436 40411158 299000032 ddbjest16.seq 94844 41787317 299002902 ddbjest17.seq 95297 39093288 299001101 ddbjest18.seq 97184 41440895 299001132 ddbjest19.seq 96027 42979370 299002564 ddbjest20.seq 93591 37862314 299001742 ddbjest21.seq 99911 44189723 299000991 ddbjest22.seq 130916 61038514 299001415 ddbjest23.seq 121312 63075153 299001990 ddbjest24.seq 104627 58271708 299001691 ddbjest25.seq 87668 71643187 299001305 ddbjest26.seq 113601 66936497 299000574 ddbjest27.seq 121374 61595515 299000247 ddbjest28.seq 113698 76347809 299002346 ddbjest29.seq 125962 57453662 299001522 ddbjest30.seq 120403 64697640 299002800 ddbjest31.seq 106809 43252469 299002098 ddbjest32.seq 76573 20506784 299002612 ddbjest33.seq 79352 21425971 299001582 ddbjest34.seq 68068 20414901 299000483 ddbjest35.seq 53433 14697779 299001363 ddbjest36.seq 53328 14510838 299004511 ddbjest37.seq 88929 35109066 299001337 ddbjest38.seq 118199 54067819 299001162 ddbjest39.seq 107911 56342566 299001702 ddbjest40.seq 105947 49323483 299000752 ddbjest41.seq 132599 68850795 299002964 ddbjest42.seq 95510 41462826 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ddbjest94.seq 92708 62739449 299002325 ddbjest95.seq 88843 55497562 299001717 ddbjest96.seq 94876 54057337 299001575 ddbjest97.seq 94187 62689975 299003398 ddbjest98.seq 93380 62825695 299003677 ddbjest99.seq 98936 53296361 299000384 ddbjest100.seq 96995 37580782 299002741 ddbjest101.seq 103414 60141458 299002712 ddbjest102.seq 95522 55734318 299000836 ddbjest103.seq 83032 42279647 299002215 ddbjest104.seq 89294 48893188 299000884 ddbjest105.seq 84912 45158219 299000925 ddbjest106.seq 90968 56205981 299002571 ddbjest107.seq 92372 57898967 299003207 ddbjest108.seq 86110 49624900 299000977 ddbjest109.seq 93837 54650313 299000603 ddbjest110.seq 80664 49191536 299002596 ddbjest111.seq 103331 55400271 299000408 ddbjest112.seq 109832 62602397 299000947 ddbjest113.seq 103553 53690630 299000255 ddbjest114.seq 130304 69513788 299001633 ddbjest115.seq 121564 67239761 299000635 ddbjest116.seq 95576 56883174 299000575 ddbjest117.seq 113535 66615842 299000278 ddbjest118.seq 119544 71416340 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ddbjest193.seq 87532 56846121 299002668 ddbjest194.seq 88187 56491124 299000778 ddbjest195.seq 83825 50977477 299000182 ddbjest196.seq 95515 55504821 299000903 ddbjest197.seq 83864 60250767 299001363 ddbjest198.seq 80212 39194787 299000741 ddbjest199.seq 130391 60747178 299000960 ddbjest200.seq 96633 53229905 298999945 ddbjest201.seq 83036 40707335 299000227 ddbjest202.seq 90825 52772226 299001569 ddbjest203.seq 93649 44521790 299000672 ddbjest204.seq 90115 47003961 299000172 ddbjest205.seq 89895 54069244 299002912 ddbjest206.seq 83543 46981308 299000952 ddbjest207.seq 103550 54598574 299002173 ddbjest208.seq 95114 56286876 299000509 ddbjest209.seq 100083 69215064 299002405 ddbjest210.seq 131761 63469870 299001183 ddbjest211.seq 105205 57464856 299001646 ddbjest212.seq 90676 56338962 299001614 ddbjest213.seq 96313 46064944 299002595 ddbjest214.seq 97802 40842228 299000550 ddbjest215.seq 85773 50131411 299000604 ddbjest216.seq 75948 48497141 299000658 ddbjest217.seq 92869 54932393 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66563981 299001833 ddbjest243.seq 81451 59646830 299000477 ddbjest244.seq 80764 45174123 299001863 ddbjest245.seq 93201 61946894 299002220 ddbjest246.seq 91357 45249046 299002870 ddbjest247.seq 90604 49935658 299000479 ddbjest248.seq 77966 38578668 299001559 ddbjest249.seq 82767 53291026 299000368 ddbjest250.seq 104455 55340818 299001017 ddbjest251.seq 84935 50674477 299000396 ddbjest252.seq 91698 54335822 299001529 ddbjest253.seq 87844 56610256 299001798 ddbjest254.seq 107426 63774963 299002430 ddbjest255.seq 108406 59541931 299001792 ddbjest256.seq 81341 46697057 299001949 ddbjest257.seq 91379 49161959 299000753 ddbjest258.seq 71523 37630532 299003601 ddbjest259.seq 78467 43395489 299001400 ddbjest260.seq 97116 54038506 299000305 ddbjest261.seq 119645 61686488 299000932 ddbjest262.seq 86454 57984595 299001717 ddbjest263.seq 92982 61195030 299000903 ddbjest264.seq 80184 45039440 299001158 ddbjest265.seq 110360 49061796 299002394 ddbjest266.seq 75141 49720062 299002877 ddbjest267.seq 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ddbjest292.seq 94891 58498727 299001501 ddbjest293.seq 70753 42618720 299000159 ddbjest294.seq 77170 49599921 299001065 ddbjest295.seq 73059 52834833 299003155 ddbjest296.seq 76735 54244694 299003258 ddbjest297.seq 62155 45105522 299002778 ddbjest298.seq 108105 46993348 299002724 ddbjest299.seq 85811 47333101 299003110 ddbjest300.seq 85601 46865464 299002050 ddbjest301.seq 85534 47734951 299000145 ddbjest302.seq 84996 47185870 299002635 ddbjest303.seq 84216 46728968 299002672 ddbjest304.seq 84737 47055456 299000582 ddbjest305.seq 84675 48371082 299002633 ddbjest306.seq 82685 45349963 299002462 ddbjest307.seq 83756 47175071 299002021 ddbjest308.seq 85376 48036034 299000964 ddbjest309.seq 85637 47413534 299001378 ddbjest310.seq 85895 46745907 299000809 ddbjest311.seq 86130 46965749 299001380 ddbjest312.seq 85242 47259079 299001658 ddbjest313.seq 86630 46758976 298999996 ddbjest314.seq 81342 48589122 299000053 ddbjest315.seq 66707 52088226 299004492 ddbjest316.seq 93167 56211517 299003287 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299001140 ddbjgss83.seq 106160 63407322 299001327 ddbjgss84.seq 109870 74678496 299002259 ddbjgss85.seq 99599 97307524 299000627 ddbjgss86.seq 98354 79538018 299001617 ddbjgss87.seq 117424 64196366 299001945 ddbjgss88.seq 97110 53433707 299001981 ddbjgss89.seq 98267 78659139 299002180 ddbjgss90.seq 107335 64482290 299000518 ddbjgss91.seq 106610 75907416 299001207 ddbjgss92.seq 108194 73558949 298999926 ddbjgss93.seq 111862 69247165 299000068 ddbjgss94.seq 120255 90687645 299000662 ddbjgss95.seq 138838 85571006 299000122 ddbjgss96.seq 132284 83943235 299001896 ddbjgss97.seq 101810 58589877 299001885 ddbjgss98.seq 109390 66643568 299000677 ddbjgss99.seq 122552 89759856 299000961 ddbjgss100.seq 123424 88782679 299001168 ddbjgss101.seq 120854 91841082 299001651 ddbjgss102.seq 114536 84885688 299001877 ddbjgss103.seq 97435 53160214 299002934 ddbjgss104.seq 94493 58665349 299000014 ddbjgss105.seq 94722 58238056 299001064 ddbjgss106.seq 94605 58252627 299001582 ddbjgss107.seq 95923 58500880 299000852 ddbjgss108.seq 107422 72697691 299002897 ddbjgss109.seq 105142 69851809 299001721 ddbjgss110.seq 108153 67552645 299000086 ddbjgss111.seq 108057 74393395 299002770 ddbjgss112.seq 103578 66025643 299000355 ddbjgss113.seq 118931 69125853 299002893 ddbjgss114.seq 96814 60635003 299000522 ddbjgss115.seq 112648 84687603 299001564 ddbjgss116.seq 97481 56491792 299000132 ddbjgss117.seq 104276 69028022 299000432 ddbjgss118.seq 118648 68619008 299000861 ddbjgss119.seq 109241 70217156 299001176 ddbjgss120.seq 108200 69276320 299001420 ddbjgss121.seq 104576 81678011 299001112 ddbjgss122.seq 93867 51517523 298999980 ddbjgss123.seq 96196 68558676 299001051 ddbjgss124.seq 98003 87877018 299000568 ddbjgss125.seq 101633 70424925 299001621 ddbjgss126.seq 100315 69618559 299000971 ddbjgss127.seq 101064 68474813 299001251 ddbjgss128.seq 100085 70004578 299002670 ddbjgss129.seq 105514 73364166 298999992 ddbjgss130.seq 80850 49094891 211204822 ddbjhtc1.seq 36688 65142421 299006389 ddbjhtc2.seq 33888 76300039 299004973 ddbjhtc3.seq 33393 80025743 299000336 ddbjhtc4.seq 82137 52279625 299003666 ddbjhtc5.seq 88445 84135049 299000602 ddbjhtc6.seq 80665 93439546 299000329 ddbjhtc7.seq 72465 75324510 280001455 ddbjhtg1.seq 1565 225473555 299011669 ddbjhtg2.seq 3361 221505402 299101362 ddbjhtg3.seq 3033 223613668 299069864 ddbjhtg4.seq 1902 223477149 299182220 ddbjhtg5.seq 1522 221560824 299160931 ddbjhtg6.seq 1500 221752872 299232086 ddbjhtg7.seq 1538 221335563 299230569 ddbjhtg8.seq 1333 225479337 299091568 ddbjhtg9.seq 1751 218744920 299060921 ddbjhtg10.seq 1141 228988244 299206301 ddbjhtg11.seq 898 230011819 299159828 ddbjhtg12.seq 884 229958004 299267719 ddbjhtg13.seq 967 229816960 299212152 ddbjhtg14.seq 919 229948953 299251105 ddbjhtg15.seq 2122 210126600 299115579 ddbjhtg16.seq 1361 223389486 299199470 ddbjhtg17.seq 1063 227691218 299036316 ddbjhtg18.seq 1032 228548052 299341931 ddbjhtg19.seq 1037 228750246 299222711 ddbjhtg20.seq 1024 228239156 299265024 ddbjhtg21.seq 927 229610348 299022945 ddbjhtg22.seq 1018 228922534 299127894 ddbjhtg23.seq 1102 227623862 299084398 ddbjhtg24.seq 1091 227821780 299068440 ddbjhtg25.seq 1119 227911832 299175081 ddbjhtg26.seq 1035 228867546 299229371 ddbjhtg27.seq 1126 227303135 299193383 ddbjhtg28.seq 1033 228829567 299129364 ddbjhtg29.seq 1017 229068370 299156288 ddbjhtg30.seq 1047 228673940 299251372 ddbjhtg31.seq 1134 227702844 299047094 ddbjhtg32.seq 1118 227736901 299121644 ddbjhtg33.seq 1233 226658073 299124109 ddbjhtg34.seq 1349 224644025 299147996 ddbjhtg35.seq 1590 223446942 299162115 ddbjhtg36.seq 1400 224901956 299197284 ddbjhtg37.seq 1330 228180774 299198815 ddbjhtg38.seq 1507 228213283 299040390 ddbjhtg39.seq 1404 228736042 299034026 ddbjhtg40.seq 1364 228743463 299068285 ddbjhtg41.seq 1240 227967509 299228845 ddbjhtg42.seq 1165 226462191 299010523 ddbjhtg43.seq 1198 226865857 299190187 ddbjhtg44.seq 1235 227089911 299162589 ddbjhtg45.seq 1148 226948879 299170408 ddbjhtg46.seq 1213 226867535 299330729 ddbjhtg47.seq 1125 226157845 299029048 ddbjhtg48.seq 1836 222500954 299058898 ddbjhtg49.seq 1976 220167102 299056909 ddbjhtg50.seq 2142 220280433 299259004 ddbjhtg51.seq 2246 221636875 299116847 ddbjhtg52.seq 1336 228360019 299064951 ddbjhtg53.seq 1535 229865360 299111303 ddbjhtg54.seq 1505 228986890 299019686 ddbjhtg55.seq 1228 231620826 299103153 ddbjhtg56.seq 1149 227606582 299016421 ddbjhtg57.seq 1100 220809463 299136198 ddbjhtg58.seq 385 54582767 70748573 ddbjhum1.seq 15098 189196890 299024764 ddbjhum2.seq 1657 213998079 299044183 ddbjhum3.seq 1618 223121354 299181078 ddbjhum4.seq 1416 216775416 299148442 ddbjhum5.seq 1467 215003763 299013374 ddbjhum6.seq 1487 213614596 299099127 ddbjhum7.seq 1561 208445891 299020951 ddbjhum8.seq 1682 216706791 299067160 ddbjhum9.seq 1562 213739668 299027848 ddbjhum10.seq 1844 214428960 299086675 ddbjhum11.seq 1937 213782404 299270599 ddbjhum12.seq 38327 160870540 299016280 ddbjhum13.seq 68904 96430787 299006927 ddbjhum14.seq 16449 179358502 299194863 ddbjhum15.seq 2779 220291334 299082095 ddbjhum16.seq 2082 222795495 299092044 ddbjhum17.seq 2508 220709889 299095195 ddbjhum18.seq 4336 215178059 299035376 ddbjhum19.seq 5063 209246381 299002225 ddbjhum20.seq 54168 99335982 299005241 ddbjhum21.seq 32048 122515691 299053014 ddbjhum22.seq 74233 109426729 299083201 ddbjhum23.seq 2774 23099416 35676830 ddbjinv1.seq 17799 196044245 299070274 ddbjinv2.seq 1082 195403480 299298150 ddbjinv3.seq 76427 100258058 299002608 ddbjinv4.seq 72962 101139621 299002686 ddbjinv5.seq 94867 86232069 299001536 ddbjinv6.seq 57922 115601373 299021463 ddbjinv7.seq 2093 24803987 44735606 ddbjmam1.seq 66308 127675721 299002263 ddbjmam2.seq 19018 39968018 93572504 ddbjpat1.seq 253014 87770034 299000052 ddbjpat2.seq 212254 101235929 299000934 ddbjpat3.seq 178455 122694288 299018754 ddbjpat4.seq 180861 103934510 299000745 ddbjpat5.seq 145626 115612878 299008957 ddbjpat6.seq 155582 111072830 299204646 ddbjpat7.seq 149393 109936419 299000157 ddbjpat8.seq 177845 93460232 299000915 ddbjpat9.seq 142461 61361288 299000021 ddbjpat10.seq 118163 66767030 299000781 ddbjpat11.seq 141479 64010786 298999995 ddbjpat12.seq 141151 71529522 299000607 ddbjpat13.seq 167727 63055232 299000207 ddbjpat14.seq 174493 91507640 299003146 ddbjpat15.seq 122887 137408137 298999959 ddbjpat16.seq 133453 121826883 299000146 ddbjpat17.seq 143740 112390948 299000142 ddbjpat18.seq 123704 88755696 299001262 ddbjpat19.seq 143230 90784850 278175470 ddbjphg.seq 2799 17600207 43877664 ddbjpln1.seq 35875 151489382 299045247 ddbjpln2.seq 1758 216676352 299108473 ddbjpln3.seq 29915 158940723 299004387 ddbjpln4.seq 90775 92082755 299017221 ddbjpln5.seq 86864 71435241 299005575 ddbjpln6.seq 34570 71720846 299006710 ddbjpln7.seq 9398 188459310 299176961 ddbjpln8.seq 1531 203073926 299016109 ddbjpln9.seq 667 248678465 320219083 ddbjpln10.seq 25144 183058642 299001935 ddbjpln11.seq 84969 86923404 299002794 ddbjpln12.seq 86984 92519900 299006516 ddbjpln13.seq 45808 134446143 299007382 ddbjpln14.seq 41296 75200872 198365625 ddbjpri1.seq 8138 213270423 299138305 ddbjpri2.seq 31707 103883642 194090394 ddbjrod1.seq 9275 204906918 299170179 ddbjrod2.seq 1106 207364048 299109681 ddbjrod3.seq 1075 208055643 299188165 ddbjrod4.seq 1106 208524174 299147671 ddbjrod5.seq 1162 215267653 299180113 ddbjrod6.seq 1164 215568873 299027425 ddbjrod7.seq 1197 217783874 299232132 ddbjrod8.seq 1178 217809664 299044395 ddbjrod9.seq 1221 222064654 299159789 ddbjrod10.seq 1166 221475556 299144448 ddbjrod11.seq 1188 218759883 299025522 ddbjrod12.seq 1151 217496830 299208910 ddbjrod13.seq 1225 222270999 299256995 ddbjrod14.seq 35971 166183058 299246396 ddbjrod15.seq 1442 229793656 299035379 ddbjrod16.seq 1506 231988516 299075044 ddbjrod17.seq 41577 123502265 299007943 ddbjrod18.seq 18264 165736380 299000628 ddbjrod19.seq 37565 45166022 138614735 ddbjsts1.seq 97021 44522050 299001615 ddbjsts2.seq 95558 48267270 299001953 ddbjsts3.seq 96205 40333831 299001735 ddbjsts4.seq 64651 38045711 299003179 ddbjsts5.seq 64932 37775453 299003154 ddbjsts6.seq 64680 38094010 298999976 ddbjsts7.seq 66632 45750031 299004098 ddbjsts8.seq 68566 52572615 299004215 ddbjsts9.seq 68575 52180855 299002572 ddbjsts10.seq 75202 49172474 299002033 ddbjsts11.seq 101809 43153469 299000183 ddbjsts12.seq 15504 4864945 35810515 ddbjsyn.seq 23210 32835370 104576582 ddbjuna.seq 208 125420 448474 ddbjvrl1.seq 86134 77030347 299000238 ddbjvrl2.seq 85276 77144430 299003593 ddbjvrl3.seq 82745 80809158 299002256 ddbjvrl4.seq 69738 67680327 245705387 ddbjvrt1.seq 69311 124438733 299002653 ddbjvrt2.seq 21015 193111626 299000661 ddbjvrt3.seq 89407 79251084 299005563 ddbjvrt4.seq 20247 151564075 299150772 ddbjvrt5.seq 1519 230950401 299038998 ddbjvrt6.seq 1606 231004850 299221392 ddbjvrt7.seq 19585 202811682 299002879 ddbjvrt8.seq 38146 134573992 249134969 ------------------------------------------------------------------------------ Total 52272669 56098558378 200704863115 ddbjcon.seq 360302 0 866758989 ddbjtpa.seq 4728 15166814 33627312 The entries and bases in the CON division and TPA dataset are not counted in the numbers given on the top of the release note or 'Total' on the above table.