DNA Data Bank of Japan DNA Database Release 67.0, Sep. 2006, including 61,144,621 entries, 65,443,024,193 bases ------------------------------------------------------------------------------- Table of contents ------------------------------------------------------------------------------- 1. Introduction 1.1. Announcement for changes in the present release 1.2. Announcement for the forthcoming changes 2. DDBJ flat file format 2.1. LOCUS line 2.2. DEFINITION line 2.3. ACCESSION line 2.4. VERSION line 2.5. KEYWORDS line 2.6. SOURCE line 2.7. REFERENCE line 2.8. COMMENT line 2.9. FEATURES line 2.10. BASE COUNT line 2.11. ORIGIN line 3. Dataset categories 3.1. Division categories 3.2. TPA separated from primary dataset 3.3. Notice for patented data 4. DDBJ staff 5. Acknowledgment 6. File Contents 6.1. File categories 6.2. File types 7. Sample of the contents in each file 7.1. Part of the contents in the file 'ddbjbct1.seq' 7.2. Part of the contents in the file 'ddbjbct1.acc' 7.3. Part of the contents in the file 'ddbjbct1.aut' 7.4. Part of the contents in the directory file 'ddbjbct1.dir' 7.5. Part of the contents in the file 'ddbjbct1.idx' 7.6. Part of the contents in the file 'ddbjbct1.jou' 7.7. Part of the contents in the file 'ddbjbct1.key' 7.8. Part of the contents in the file 'ddbjbct1.org' 7.9. Part of the contents in the short directory file 'ddbjbct1.sdr' 7.10. Part of the contents in the accession number index file 'ddbjacc1.idx' 7.11. Part of the contents in the keyword phrase index file 'ddbjkey1.idx' 7.12. Part of the contents in the journal citation index file 'ddbjjou1.idx' 7.13. Part of the contents in the gene name index 'ddbjgen.idx' 8. Release history 9. File list ------------------------------------------------------------------------------- 1. Introduction This database contains nucleotide sequence data for any organism, not only those with DNA genomes but also those with RNA genomes. This database may be copied and redistributed without permission on the condition that all the statements in this release note are reproduced in each copy. See also '3.3. Notice for patented data' below. The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank (*), and European Molecular Biology Laboratory/European Bioinformatics Institute (EMBL/EBI) as of August 25, 2006. This unified database was made possible thanks to the international collaboration among the three data banks. All the entries have accordingly been annotated using the feature keys common to them. *'GenBank' is a trademark of NIH, USA, and is operated by National Center for Biotechnology Information (NCBI) at NIH. 1.1. Announcement for changes in the present release Nothing particular. 1.2. Announcement for the forthcoming changes Revision of the DDBJ/EMBL/GenBank Feature Table: Definition: According to the agreement at the INSD collaborative meeting in 2006, the document, DDBJ/EMBL/GenBank Feature Table: Definition, will be revised in October, 2006. See also '2.9. FEATURES line' below. The revised points are introduced in advance on following URL; http://www.ddbj.nig.ac.jp/insdc/icm2006-e.html#ft At DDBJ, the retrofit for this revision will be completed by the next periodical release to be published in December 2006. Please note that during this transitional period, some entries will be retrofitted. Split of files: At present, all files of a DDBJ release except some indexes (ddbjacc#.idx, ddbjjou#.idx, and ddbjkey#.idx) have 300 MB storage capacity as shown at the sections, '6. File Contents' and '9. File list'. From the next release 68, December 2006, we will change the maximum file size from 300 MB to 1.5 GB, because the network capacity has been remarkably increased. Each file named as ddbj***##.seq will have at most 1.5 GB storage capacity like as the index files by then. 2. DDBJ flat file format The database is a collection of "entry" which is the unit of the data. The entries submitted to databanks were processed and publicized according to the DDBJ format for distribution (flat file). The flat file includes the sequence and the information of submitters, references, source organisms, and "feature" information, etc. The items of the DDBJ flat file are explained at following; ------------------------------------------------------------------------------- LOCUS AB000000 450 bp mRNA linear HUM 08-JUL-2002 DEFINITION Homo sapiens GAPD mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds. ACCESSION AB000000 VERSION AB000000.1 KEYWORDS . SOURCE Homo sapiens ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 450) AUTHORS Mishima,H. and Shizuoka,T. TITLE Direct Submission JOURNAL Submitted (30-NOV-2000) to the DDBJ/EMBL/GenBank databases. Hanako Mishima, National Institute of Genetics, DNA Data Bank of Japan; Yata 1111, Mishima, Shizuoka 411-8540, Japan (E-mail:mishima@supernig.nig.ac.jp, Tel:81-55-981-6853, Fax:81-55-981-6849) REFERENCE 2 (sites) AUTHORS Mishima,H., Shizuoka,T. and Fuji,I. TITLE Glyceraldehyde-3-phosphate dehydrogenase expressed in human liver JOURNAL Unpublished (2002) COMMENT Human cDNA sequencing project. FEATURES Location/Qualifiers source 1..450 /chromosome="12" /clone="GT200015" /clone_lib="lambda gt11 human liver cDNA (GeneTech. No.20)" /map="12p13" /mol_type="mRNA" /organism="Homo sapiens" /tissue_type="liver" CDS 86..>450 /codon_start=1 /gene="GAPD" /product="glyceraldehyde-3-phosphate dehydrogenase" /protein_id="BAA12345.1" /transl_table=1 /translation="MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTDYMT YMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVTVFGCRNPKEIPWGETSAEFVVEYTG VFTDKDKAVAQLKGGAKKV" BASE COUNT 102 a 119 c 131 g 98 t ORIGIN 1 cccacgcgtc cggtcgcatc gcacttgtag ctctcgaccc ccgcatctca tccctcctct 61 cgcttagttc agatcgaaat cgcaaatggc gaagattaag atcgggatca atgggttcgg 121 gaggatcggg aggctcgtgg ccagggtggc cctgcagagc gacgacgtcg agctcgtcgc 181 cgtcaacgac cccttcatca ccaccgacta catgacatac atgttcaagt atgacactgt 241 gcacggccag tggaagcatc atgaggttaa ggtgaaggac tccaagaccc ttctcttcgg 301 tgagaaggag gtcaccgtgt tcggctgcag gaaccctaag gagatcccat ggggtgagac 361 tagcgctgag tttgttgtgg agtacactgg tgttttcact gacaaggaca aggccgttgc 421 tcaacttaag ggtggtgcta agaaggtctg // ------------------------------------------------------------------------------- 2.1. LOCUS line The format of LOCUS line in the flat file is shown below; --------- -------- Positions Contents --------- -------- 01-05 'LOCUS' 06-12 spaces 13-28 Locus name 29-29 space 30-40 Length of sequence, right-justified 41-41 space 42-43 'bp' 44-47 spaces 48-54 DNA, RNA, mRNA, pre-RNA, rRNA, scRNA, snRNA, snoRNA, tRNA, left justified 55-55 space 56-63 'linear' followed by two spaces, or 'circular' 64-64 space 65-67 The division code (see '3.1. Division categories') 68-68 space 69-79 Date, in the form dd-MMM-yyyy (e.g., 08-JUL-2002) ------------------------------------------------------------------------------ 2.2. DEFINITION line The definition briefly describes the information of gene(s). "DEFINITION" is constructed by each of the three data banks. 2.3. ACCESSION line This line shows accession number of the entry data. A unique accession number is issued to the data submitter by each of the three data banks. The accession number is composed of 1 alphabet character and 5 digits (ex. A12345) or 2 alphabet characters and 6 digits (ex. AB123456). The former style was used in 1980s, but later the latter style was introduced because of data explosion. All the entries designated by the accession numbers with the prefixes given below have been collected and processed by DDBJ, and the rest have been done by GenBank and EMBL/EBI. ------------------------------------------------------------------------------- C, D, E, AB, AG, AK, AP, AT, AU, AV, BA, BB, BD, BJ, BP, BR, BS, BW, BY, CI, CJ, DA, DB, DD, DE, DF, DG ------------------------------------------------------------------------------- You can find the list of the prefixes of the accession numbers at the following URL; http://www.ddbj.nig.ac.jp/sub/prefix.html If multiple entries are united to an entry, or if an entry is extensively modified after the submission, the responsible data banks may assign a new accession number to it. In these cases, the new accession number is called the primary accession number, and the old accession number(s) is/are called the secondary accession number(s). In the flat file, the primary accession number is indicated first, then the secondary accession number(s) follows. You can find the same updated entry with both the primary and the secondary accession numbers. 2.4. VERSION line This line consists of an accession number and a version number, like "AB123456.1", in which the digit(s) after the period is a version number. The data open to public for the first time is version number as "1". The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. 2.5. KEYWORDS line The data banks describe this line, if necessary. In many cases, the categories of the data (EST, HTG etc.), gene names and product names included in "KEYWORDS". 2.6. SOURCE line This line shows the scientific name on organism from which the sequence is obtained and an organelle type if the sequence is derived from an organelle other than the nucleus. 2.7. REFERENCE line The information on the submitters and references related to the submitted sequence is indicated in REFERENCE line. 2.8. COMMENT line. The information about an entry that can not be described using FEATURES or the other fields. 2.9. FEATURES line Biological features of a submitted sequence data are described with "Feature" key (the biological nature of the annotated feature), "Location" (the region of the sequence which corresponds to Feature), and "Qualifier" (supplementary information about Feature). The "Feature" and "Qualifier" keys used in the present release is defined by DDBJ/EMBL/GenBank Feature Table: Definition (Version 6.5 April, 2006). The document is continuously updated every half year. You can find its newest version on URL; http://www.ddbj.nig.ac.jp/FT/full_index.html 2.10. BASE COUNT line In the BASE COUNT line of the DDBJ flat file, 9 digits are allocated for each number of a (adenine), c (cytosine), g(guanine) and t (thymine). In the case of RNA sequence, uracil is indicated as "t" according to the rule of the international nucleotide database. In accordance with the relaxation of sequence length limitation, GenBank had already dropped the BASE COUNT line from their flat file format from GenBank Release 138 (Oct. 2003). DDBJ has decided to maintain the BASE COUNT line in our flat file format from the view that GC contents are still important information to characterize the sequence. 2.11. ORIGIN line The sequence data starts from the next line of ORIGIN. The sequence is indicated as lower case letters, delimited by space per 10 bases, starts a new line by 60 bases. The numbers described at left side of lines mean the ordinal number of the top base of the line. 3. Dataset categories There have been a number of genome projects going on worldwide. Among them human genome projects have probably been most productive and yielded a large number of ordinary sequences, huge amounts of genome sequences and EST (expressed sequence tags). Thus, we DDBJ have the human (HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences, while PRI division of GenBank database contains human sequences too. Note that the other divisions such as EST, GSS, and HTC may also contain human sequences. The present release is divided into 21 categories of organisms and others. See also '6.1. File categories' and '9. File list' below. The contents of the 21 categories are shown in the following. 3.1. Division categories The first 20 divisions are given below; HUM; human PRI; primates (other than human) ROD; rodents MAM; mammals (other than primates and rodents) VRT; vertebrates (other than mammals) INV; invertebrates (animals other than vertebrates) PLN; plants, fungi, plastids (eukaryotes other than animals) BCT; bacteria (including both Eubacteria and Archaea) VRL; viruses PHG; bacteriophages ENV; sequences obtained via environmental sampling methods SYN; synthetic constructs EST; expressed sequence tags; short single pass cDNA sequences GSS; genome survey sequences; short single pass genomic sequences HTC; high throughput cDNA sequences; The sequence submitted from cDNA sequencing projects except for EST. This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. HTG; high throughput genomic sequences The sequence submitted mainly from genome sequencing projects which regarded a clone as a sequencing unit. STS; sequence tagged sites The tag site for genome sequencing. The information of chromosome, map, PCR_condition is mandatory for this division. PAT; patented data The data submitted to JPO (Japan Patent Office), EPO (European Patent Office), or USPTO (United States Patent and Trademark Office). See also '3.3. Notice for patented data' in below. UNA; the data not annotated The UNA division is not used for recently submitted sequences. CON; Contig / Constructed To conjugate a series of entries, such as those submitted from a genome project, each of data banks constructs an entry and assign an accession number to a large scale sequence dataset. Such entries are classified into the CON division. The entry in the CON division has the information of joined accession numbers instead of the sequence data. The corresponding entries of the CON entry have been submitted to other divisions. The entries and bases in the CON division are not counted in the released numbers given on the top of the release note. 3.2. TPA separated from primary dataset TPA (Third Party Annotation) data are also available. The TPA data are a complement to the existing DDBJ/EMBL/GenBank comprehensive database of primary nucleotide sequences, which typically result from direct sequencing of cDNAs, ESTs, genomic DNAs etc. Primary entries are defined to be data for which the submitting group has done the sequencing and annotation, and as 'owner' of these data has privileges to submit updates/corrections etc. Primary entries used to build a TPA sequence are those that have been experimentally determined and are publicly available in the DDBJ/EMBL/GenBank databases. They may not be from a proprietary database. The entries and bases in TPA are not counted in the released numbers given on the top of the release note. See also the following URLs; http://www.ddbj.nig.ac.jp/sub/tpa-e.html http://www.insdc.org/TPA.html 3.3. Notice for patented data This release includes PAT division for patented data as described above. The patented data are those which the Japanese Patent Office (JPO), United States Patent and Trademark Office (USPTO), and the European Patent Office (EPO) collected, processed and released. The prefixes of accession numbers for the patented data are shown below; ----------------------- JPO : E, BD, DD USPTO: I, AR EPO : A, AX, CQ, CS ----------------------- Note also that unauthorized use of the patented data may cause legal issues for which DDBJ takes no responsibility. 4. DDBJ staff This release is published by the following DDBJ staff. Gojobori T, Tateno Y, Nishikawa K, Sugawara H, Saitou N, Okubo K, Ikeo K, Suzuki Y, Fukuchi S, Barrero R, Abe T, Sumiyama K, Ogasawara O, Aono H, Atsumi T, Ejima M, Fukuda D, Gojobori M, Hikino Y, Hirai T, Honda K, Hoshi N, Ishida K, Kawamoto T, Kohira J, Koike T, Kosuge T, Kusakabe A, Kuwana Y, Li C, Maesako H, Mamiya K, Maruyama M, Maruyama N, Mashima J, Miyazawa S, Mizunuma T, Murakata N, Nagira S, Nagura M, Nishida S, Nishinomiya N, Nozaki A, Okido T, Sakai K, Shigemoto Y, Shiozawa H, Sugimoto K, Sugiyama F, Suzuki S, Tsuboi M, Tsutsui H, Yamada H, Yamamoto M, and Yokoyama E Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Research Organization of Information and Systems Mishima 411-8540, Japan Phone: +81 55 981 6853 FAX: +81 55 981 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp/ (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp/ (for DDBJ sequence data submission system) 5. Acknowledgment We are grateful to NCBI and EMBL/EBI for a firm friendship and an excellent collaboration with us. We also thank the Japanese Patent Office for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ uses the Super-SINET computer network for data collection, data exchange and various services. 6. File Contents 6.1. File categories This release covers 21 categories (see also '3. Dataset categories'.) of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct*** Category for bacteria ddbjcon*** Category for CON (contig sequences) ddbjenv*** Category for ENV (environmental samples) ddbjest*** Category for EST (expressed sequence tags) ddbjgss*** Category for GSS (genome survey sequences) ddbjhtc*** Category for HTC (high throughput cDNA sequences) ddbjhtg*** Category for HTG (high throughput genomic sequences) ddbjhum*** Category for human ddbjinv*** Category for invertebrates ddbjmam*** Category for mammals other than primates and rodents ddbjpat*** Category for patents ddbjphg*** Category for phages ddbjpln*** Category for plants ddbjpri*** Category for primates other than human ddbjrod*** Category for rodents ddbjsts*** Category for STS (sequence tagged sites) ddbjsyn*** Category for synthetic DNAs ddbjtpa*** Category for TPA (Third Party Annotation) ddbjuna*** Category for unannotated sequences ddbjvrl*** Category for viruses ddbjvrt*** Category for vertebrates other than mammals ------------------------------------------------------------------------------ Some of above in the present release are recorded in multiple ddbj***.seq files, each of which at most has 300 MB storage capacity as follows, respectively. --------------------- ddbjbct : 14 files ddbjenv : 3 files ddbjest : 430 files ddbjgss : 144 files ddbjhtc : 8 files ddbjhtg : 71 files ddbjhum : 23 files ddbjinv : 7 files ddbjmam : 2 files ddbjpat : 22 files ddbjpln : 16 files ddbjpri : 3 files ddbjrod : 21 files ddbjsts : 12 files ddbjvrl : 5 files ddbjvrt : 10 files ddbjcon : 2 files --------------------- 6.2. File types The index files included in this release are ddbjacc#.idx, ddbjgen.idx, ddbjjou#.idx, and ddbjkey#.idx. All of them except ddbjgen.idx are recorded in multiple ddbj****.idx files, each of which at most has 1.5 GB storage capacity. We have also included a program by which to make the index files not presented in this release. For the use of the program, see the files, seq2indexes.doc, seq2indexes.c, and seq2indexes.h in this release. Each category then has the following nine types of files. Note that all the files except for ddbj***.seq are created by the user by use of seq2indexes as mentioned above. ------------------------------------------------------------------------------ ddbj***.seq List of an entry in DDBJ format, see 7.1. ddbj***.acc List of the accession numbers, see 7.2. ddbj***.aut List of the authors, see 7.3. ddbj***.dir List of the short directory in DDBJ style, see 7.4. ddbj***.idx List of indices, see 7.5. ddbj***.jou List of the journals, see 7.6. ddbj***.key List of the key words, see 7.7. ddbj***.org List of the species names, see 7.8. ddbj***.sdr List of the short directory in DDBJ style, see 7.9. ------------------------------------------------------------------------------ 7. Sample of the contents in each file 7.1. Part of the contents in the file 'ddbjbct1.seq' This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA linear BCT 14-APR-2000 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Miki Jishage, National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail:mjishage@lab.nig.ac.jp, Tel:0559-81-6742, Fax:0559-81-6746) REFERENCE 2 (bases 1 to 993) AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol. Gen. Genet. 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /mol_type="mRNA" /organism="Escherichia coli" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /transl_table=11 /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK" variation 75 /citation=[3] /replace="t" variation 97 /citation=[3] /replace="t" variation 99 /citation=[3] /replace="t" variation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ 7.2. Part of the contents in the file 'ddbjbct1.acc' The first column refers to the secondary accession number, second column to the locus name, and third to the primary accession number. The primary number may be the same as the secondary number. They are arranged in the ascending order of the secondary accession numbers. ------------------------------------------------------------------------------ D00681 -> AB028210 AB028210 D10012 -> AB010832 AB010832 D10013 -> AB010832 AB010832 D10048 -> AB008452 AB008452 D13563 -> AB018435 AB018435 D13614 -> AB006206 AB006206 D13762 -> AB063629 AB063629 D14537 -> AB040412 AB040412 D14604 -> AB001637 AB001637 D14607 -> AB027308 AB027308 ------------------------------------------------------------------------------ 7.3. Part of the contents in the file 'ddbjbct1.aut' For each author name given on the left to the arrow, the corresponding locus name and primary accession number are respectively listed on the right. They are arranged in the alphabetical order of the author names. ------------------------------------------------------------------------------ Aarestrup,F.M.Threlfall,E.J. -> AF393510 AF393510 Aarnikunnas,J. -> AY090766 AY090766 Aarnio,T. -> AY792975 AY792975 Aarnio,T. -> AY792976 AY792976 Aarnio,T. -> AY792977 AY792977 Aarnio,T. -> AY792978 AY792978 Aarnio,T. -> AY792979 AY792979 Aarnio,T. -> AY792980 AY792980 Aarnio,T. -> AY792981 AY792981 Aarnio,T. -> AY792982 AY792982 ------------------------------------------------------------------------------ 7.4. Part of the contents in the directory file 'ddbjbct1.dir' For each locus name given in the first column, the corresponding primary accession number, molecular type, number of nucleotide pairs, and description for the locus are respectively listed. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ AAC133631 AJ133631 DNA 1482 Alicyclobacillus acidoterrestris 16S rRNA gene, strain DSM 3922T. AAC133789 AJ133789 DNA 3097 Alicyclobacillus acidocaldarius cyclomaltodex trinase gene region. AAC243194 AJ243194 DNA 1720 Alicyclobacillus acidocaldarius kdpA gene. AAC252160 AJ252160 DNA 1638 Alicyclobacillus acidocaldarius cysA gene for putative ABC-transporter ATP-binding protein. AAC252161 AJ252161 DNA 8690 Alicyclobacillus acidocaldarius maltose/maltodextrine transport gene region (malEFGR genes, cdaA gene and glcA gene). AAC289685 AJ289685 DNA 453 Actinobacillus actinomycetemcomitans partial infB gene for translation initiation factor IF2, strain CCUG13227 T (ATCC33384, NCTC9710). AAC289686 AJ289686 DNA 453 Actinobacillus actinomycetemcomitans partial infB gene for translation initiation factor IF2, strain HK666. AAC289687 AJ289687 DNA 453 Actinobacillus actinomycetemcomitans partial infB gene for translation initiation factor IF2, strain HK1662. AAC289694 AJ289694 DNA 453 Actinobacillus actinomycetemcomitans partial infB gene for translation initiation factor IF2, strain HK1651. ------------------------------------------------------------------------------ 7.5. Part of the contents in the file 'ddbjbct1.idx' The first column refers to the locus name, second column to the starting site of the locus in byte, and third to its ending site in byte. They are arranged in the alphabetical order of the locus names. ------------------------------------------------------------------------------ %***************************** #AAC133631 1125664347 1125667802 #AAC133789 1125786300 1125794416 #AAC243194 1136871421 1136876093 #AAC252160 1146107711 1146112332 #AAC252161 1146112333 1146131350 #AAC289685 1155353186 1155356047 #AAC289686 1155356048 1155358781 #AAC289687 1155358782 1155361517 #AAC289694 1155377972 1155380768 #AAC308623 1167555889 1167560983 ------------------------------------------------------------------------------ 7.6. Part of the contents in the file 'ddbjbct1.jou' This gives information on the journal in which sequence data were published. ------------------------------------------------------------------------------ Yi Chuan Xue Bao 29 (12), 1111-1117 (2002) -> AY601668 AY601668 Yi Chuan Xue Bao 29 (12), 1111-1117 (2002) -> AY603420 AY603420 Yi Chuan Xue Bao 30 (4), 364-369 (2003) -> AF526379 AF526379 Yonsei Med. J. 39 (6), 520-525 (1998) -> AF373217 AF373217 Yonsei Med. J. 39 (6), 520-525 (1998) -> AF373218 AF373218 Z. Lebensm.-Unters. -Forsch., A Eur. Food Res. Technol. 209, 83-87(1999). -> ABA7623 AJ007623 Z. Lebensm.-Unters. -Forsch., A Eur. Food Res. Technol. 209, 83-87(1999). -> ABA7624 AJ007624 Zb. Bioteh. Fak. Univ. Ljubl. Kmet. Supl. 79(1), 107-113(2002). -> ASP012466 AJ012466 Zb. Bioteh. Fak. Univ. Ljubl. Kmet. Supl. 79(1), 19-26(2002). -> ASP012466 AJ012466 Zentralbl. Bakteriol. 286 (1), 1-8 (1997) -> AF192489 AF192489 Zentralbl. Bakteriol. 290, 37-49(2000). -> LPN7311 AJ007311 Zentralbl. Bakteriol. 291, 345-352(2001). -> LPN300467 AJ300467 Zentralbl. Bakteriol. 292, 207-214(2002). -> ECO459584 AJ459584 Zhi Wu Bao Hu Xue Hui Hui Kan 44, 233-244 (2002) -> AF540014 AF540014 Zhi Wu Bing Li Xue Bao 34 (1), 80-85 (2004) -> AY447045 AY447045 Zhi Wu Bing Li Xue Hui Kan 12, 57-64 (2003) -> AF450275 AF450275 Zhiwu Baohuxue Hui Huikan 44, 185-208 (2002) -> AY122057 AY122057 Zhiwu Binglixue Huikan 6, 207-208 (1997) -> AF149819 AF149819 Zhongguo Jiaqin 25 (Supplement 1), 60-71 (2003) -> AY615358 AY615358 Zhongguo Kang Sheng Su Za Zhi 21, 94-97 (2003) -> AY293073 AY293073 Zhongguo Kang Sheng Su Za Zhi 28, 96-100 (2003) -> AY293071 AY293071 Zhongguo Kang Sheng Su Za Zhi 28, 96-100 (2003) -> AY293072 AY293072 Zhongguo Lin Chuang Yao Li Xue Za Zhi 19, 190-195 (2003) -> AY536040 AY536040 Zhongguo Nong Ye Ke Xue 36(1), 17-25 (2003) -> AY555768 AY555768 Zhonghua Liu Xing Bing Xue Za Zhi 24, 291-295 (2003) -> AY279003 AY279003 Zhonghua Min Guo Wei Sheng Wu Ji Mian Yi Xue Za Zhi (2003) In press -> AY299484 AY299484 Zhonghua Min Guo Wei Sheng Wu Ji Mian Yi Xue Za Zhi 22 (5), 489-492 (2002) -> AY382160 AY382160 Zool. Sci. 14, 701-706 (1997) -> AB002286 AB002286 Zool. Sci. 14, 701-706 (1997) -> AB002287 AB002287 Zool. Sci. 14, 701-706 (1997) -> AB002288 AB002288 Zool. Sci. 14, 701-706 (1997) -> AB002289 AB002289 Zool. Sci. 14, 701-706 (1997) -> AB002290 AB002290 Zool. Sci. 14, 701-706 (1997) -> AB002291 AB002291 Zoolog. Sci. 17, 983-989 (2000) -> AB038366 AB038366 Zoolog. Sci. 17, 983-989 (2000) -> AB038367 AB038367 Zoolog. Sci. 17, 983-989 (2000) -> AB038368 AB038368 Zoolog. Sci. 17, 983-989 (2000) -> AB038369 AB038369 Zoolog. Sci. 17, 983-989 (2000) -> AB038370 AB038370 ------------------------------------------------------------------------------ 7.7. Part of the contents in the file 'ddbjbct1.key' For the locus and accession number respectively given on the right to the arrow, the corresponding keywords are listed on the left. ------------------------------------------------------------------------------ Synechococcus sp. DNA for intrinsic membrane protein, malK-like protein, cyanase, complete cds. -> AB000100 AB000100 cynS; cyanase; cynD; malK-like protein; cynB; intrinsic membrane protein. -> AB000100 AB000100 Direct Submission -> AB000100 AB000100 Identification and nitrogen regulation of the cyanase gene from the cyanobacteri a Synechocystis sp. strain PPC 6803 and Synechococcus sp. strain PPC 7942 -> AB000100 AB000100 Sequence updated (31-Mar-1997) by: Tatsuo Omata Sequence updated (14-Aug-1997) -> AB000100 AB000100 Sphingomonas sp. 16S ribosomal RNA. -> AB000106 AB000106 16S rRNA. -> AB000106 AB000106 Direct Submission -> AB000106 AB000106 Sphingomonas sp. VT1 16s rRNA -> AB000106 AB000106 Synechococcus sp. gene for ribosomal proteins, complete cds. -> AB000111 AB000111 tRNA pseudouridine synthase I; 50S ribosomal protein L17; DNA-dircted RNA polymerase alpha chain; 30S Ribosomal Protein S11; 30S ribosomal protein S13; 50S ribosomal protein L36; adenylate kinase; preprotein translocase SecY subunit; 50S ribosomal protein L15; 30S ribosomal protein S5; 50S ribosomal protein L18; 50S ribosomal protein L6; 30S ribosomal protein S8; 50S ribosomal protein L5; 50S ribosomal protein L24; 50S ribosomal protein L14; 30S ribosomal protein S17; 50S ribosomal protein L29; 50S ribosomal protein L16; 30S ribosomal protein S3; 50S ribosomal protein L22; 30S ribosomal protein S19; 50S ribosomal protein L2; 50S ribosomal protein L23; 50S ribosomal protein L4; 50S ribosomal protein L3. -> AB000111 AB000111 Direct Submission -> AB000111 AB000111 ------------------------------------------------------------------------------ 7.8. Part of the contents in the file 'ddbjbct1.org' For the locus and accession number respectively given on the right to the arrow, the corresponding taxonomic names are listed on the left. They are arranged in the alphabetical order of the species names. ------------------------------------------------------------------------------ 'Flavobacterium' lutescens 'Flavobacterium' lutescens Bacteria; Proteobacteria; gamma subdivision; Pseudomonadaceae; Pseudomonas. -> AB035478 AB035478 'Flavobacterium' lutescens 'Flavobacterium' lutescens Bacteria; Proteobacteria; gamma subdivision; Pseudomonadaceae; Pseudomonas. -> AB042983 AB042983 'Fragaria multicipita' phytoplasma 'Fragaria multicipita' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF036354 AF036354 'Fragaria multicipita' phytoplasma 'Fragaria multicipita' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF190224 AF190224 'Fragaria multicipita' phytoplasma 'Fragaria multicipita' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF190225 AF190225 'Helichrysum bracteatum' phytoplasma 'Helichrysum bracteatum' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF515771 AF515771 'Momordica charantia' phytoplasma 'Momordica charantia' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> PHY431368 AJ431368 'Rehmannia glutinosa var. purpurea' phytoplasma 'Rehmannia glutinosa var. purpurea' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AF335107 AF335107 'Rhizomonas' sp. 'Rhizomonas' sp. Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. -> UBA132327 AJ132327 'Vinca minor' phytoplasma 'Vinca minor' phytoplasma Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma. -> AY144608 AY144608 ------------------------------------------------------------------------------ 7.9. Part of the contents in the short directory file 'ddbjbct1.sdr' The short directory file contains brief descriptions of all of the sequence entries contained in the DDBJ style. ------------------------------------------------------------------------------ AC133631 Alicyclobacillus acidoterrestris 16S rRNA gene, strain DSM 1482bp AAC133789 Alicyclobacillus acidocaldarius cyclomaltodextrinase gene 3097bp AAC243194 Alicyclobacillus acidocaldarius kdpA gene. 1720bp AAC252160 Alicyclobacillus acidocaldarius cysA gene for putative 1638bp AAC252161 Alicyclobacillus acidocaldarius maltose/maltodextrine 8690bp AAC289685 Actinobacillus actinomycetemcomitans partial infB gene for 453bp AAC289686 Actinobacillus actinomycetemcomitans partial infB gene for 453bp AAC289687 Actinobacillus actinomycetemcomitans partial infB gene for 453bp AAC289694 Actinobacillus actinomycetemcomitans partial infB gene for 453bp AAC308623 Alicyclobacillus acidocaldarius celA gene for cellulase. 1778bp AAC417690 Actinobacillus actinomycetemcomitans mukB gene. 4491bp AAC419840 Acetobacter aceti 16S rRNA gene, strain LMG 1531. 1440bp AAC430786 Actinobacillus actinomycetemcomitans partial fur gene for 1246bp AAC493667 Alicyclobacillus acidocaldarius subsp. rittmannii 16S rRNA 1472bp AAC496806 Alicyclobacillus acidocaldarius 16S rRNA gene, strain DSM 1507bp ------------------------------------------------------------------------------ In addition to the tables for the four following index files are included in this release. These files were prepared for BCT, ENV, EST, GSS, HTC, HTG, HUM, INV, MAM, PAT, PHG, PLN, PRI, ROD, STS, SYN, UNA, VRL, and VRT divisions. Accession number index file Keyword phrase index file Journal citation index file Gene name index file A brief description is given for each file in the above section, '3. Dataset categories'. 7.10. Part of the contents in the accession number index file 'ddbjacc1.idx' The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00001 ECPBPA BCT X04516 D00002 ECPYRC BCT X04469 D00003 HUMP450M HUM D00003 D00004 FLBFLBL40 VRL D00004 D00005 IBAMEM682 VRL D00005 D00006 BACPNS1981 BCT D00006 D00007 CHKCALGRP VRT D00007 D00008 ECPNTAB BCT X04195 D00009 DROPER1 INV D00009 ------------------------------------------------------------------------------ 7.11. Part of the contents in the keyword phrase index file 'ddbjkey1.idx' Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ "COAT PROTEIN SMO511347 VRL AJ511347 'TNPA GENE UBA564903 BCT AJ564903 'ZINC-FINGER' MOTIF PRNS53 VRL X60546 (+) MATING TYPE SURFACE PROTEIN ABGPSSP PLN M94861 (1,3 TABETGLUB PLN Z22874 (1,3)-BETA-D-GLUCAN BINDING PROTEIN AJ606470 INV AJ606470 (1,3)BETA-GLUCAN SYNTHASE NCU09275 PLN U09275 (1,4)-BETA-D-ARABINOXYLAN ARABINOFURANOHYDROLASE ANAXHA PLN Z78011 ANTUAXHA PLN Z78010 (1,6)-BETA-GLUCAN BIOSYNTHESIS YSAKRE1A PLN M81588 (1-3)-BETA-GLUCANASE NTSP41AGN PLN X81560 PA13BGPT PLN X57794 (1-3,1-4)-BETA-D-GLUCANASE HVBDG PLN X52572 (1-4)-BETA-MANNAN ENDOHYDROLASE CAR278996 PLN AJ278996 CAR293305 PLN AJ293305 (2',5'-OLIGOISOADENYLATE SYNTHETASE-DEPENDENT) AL138776 HUM AL138776 (2'-5') OLIGO(A) SYNTHASE E16 SSO4G06 EST F14610 (2'-5')OLIGOADENYLATE SYNTHETASE HSA225089 HUM AJ225089 HUMSYN25A HUM D00068 SSA225090 MAM AJ225090 (6')-IB' AMINOGLYCOSIDE ACETYLTRANSFERASE AXY278514 BCT AJ278514 PAE291609 BCT AJ291609 (8,11)-LINOLEOYL DESATURASE COF245938 PLN AJ245938 ------------------------------------------------------------------------------ 7.12. Part of the contents in the journal citation index file 'ddbjjou1.idx' The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ (ER) AAPS PHARMSCI. 4 (3), DOI 10.1208/PS040315 (2002) AY170916 ROD AY170916 (ER) AM. J. HUM. GENET. 76 (1) (2004) IN PRESS AY753209S1 HUM AY753209 AY753209S2 HUM AY753210 (ER) ARCH. VIROL. (2004) IN PRESS AF531505 VRL AF531505 AY518899 VRL AY518899 AY518900 VRL AY518900 AY518901 VRL AY518901 AY518902 VRL AY518902 AY518903 VRL AY518903 AY518904 VRL AY518904 AY518905 VRL AY518905 AY518906 VRL AY518906 AY518907 VRL AY518907 AY518908 VRL AY518908 AY518909 VRL AY518909 AY518910 VRL AY518910 AY518911 VRL AY518911 AY518912 VRL AY518912 AY518913 VRL AY518913 AY518914 VRL AY518914 AY518915 VRL AY518915 AY518916 VRL AY518916 AY518917 VRL AY518917 AY518918 VRL AY518918 AY518919 VRL AY518919 AY518920 VRL AY518920 AY518921 VRL AY518921 AY518922 VRL AY518922 AY518923 VRL AY518923 AY518924 VRL AY518924 AY518925 VRL AY518925 AY518926 VRL AY518926 AY518927 VRL AY518927 AY518928 VRL AY518928 AY518929 VRL AY518929 AY518930 VRL AY518930 AY518931 VRL AY518931 AY518932 VRL AY518932 AY521234 VRL AY521234 AY521235 VRL AY521235 AY521236 VRL AY521236 AY521237 VRL AY521237 AY521238 VRL AY521238 (ER) ARTERIOSCLER. THROMB. VASC. BIOL. (2004) IN PRESS AY563557 HUM AY563557 (ER) BIOCHEM. BIOPHYS. RES. COMMUN. 325 (1), 203-214 (2004) AY563137 HUM AY563137 (ER) BIOCHEM. J./10.1042/BJ20030293 HSA496460 HUM AJ496460 ------------------------------------------------------------------------------ 7.13. Part of the contents in the gene name index file 'ddbjgen.idx' This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ 'ARR BX927156 BCT BX927156 'BGLG BX927156 BCT BX927156 'BGLS BX927148 BCT BX927148 'BGLY' BX927156 BCT BX927156 'BRNQ AF305888 BCT AF305888 'COMK AL591983 BCT AL591983 AL596172 BCT AL596172 'CRCB BX927155 BCT BX927155 'CRTI BX927155 BCT BX927155 'DPPE LDDIPEP BCT Z34898 'FIC BX936398 BCT BX936398 ------------------------------------------------------------------------------ 8. Release history Release Date Entries Bases Comments 67 09/06 61,144,621 65,443,024,193 66 06/06 58,176,628 62,945,843,881 65 03/06 55,890,995 60,564,721,635 TPA subcategories started 64 12/05 52,272,669 56,098,558,378 Some index files split 63 09/05 47,741,593 52,246,110,341 62 06/05 45,249,444 49,158,155,283 ENV started Version for release note started 61 03/05 43,118,204 47,099,081,750 Changed style of release note 60 12/04 40,583,945 44,416,752,273 /db_xref="H-inv:**" started 59 09/04 37,926,117 42,245,956,937 58 06/04 34,917,581 39,812,635,108 57 03/04 32,693,678 38,008,449,840 56 12/03 30,405,173 36,079,046,032 55 09/03 27,753,140 34,280,225,489 54 06/03 25,149,821 32,162,041,177 53 02/03 23,250,813 29,711,299,332 52 12/02 20,354,812 26,931,456,316 51 09/02 18,401,358 22,782,404,136 TPA started 50 06/02 17,260,693 20,158,357,982 49 04/02 16,503,157 18,579,627,226 48 01/02 15,016,100 16,197,713,855 47 10/01 13,266,610 14,145,671,645 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------ Since release 65 ------------------ Introduction of two types of TPA entries: According to the decision of ICM 2005, TPA data set is now classified into two categories, "TPA:experimental" and "TPA:inferential", to distinguish TPA annotation supported by wet-lab. experimental evidence and that inferred. The retrofit to divide TPA entries into two categories starts from the release 65. You can find the description of the two TPA categories at the following URLs; http://www.ddbj.nig.ac.jp/sub/tpa-e.html http://www.insdc.org/TPA.html See also '3.2. TPA separated from primary dataset'. ------------------ Since release 64 ------------------ Split of index files: In the present release, some of index files (ddbjacc.idx, ddbjjou.idx, and ddbjkey.idx) have been greater than 2 GB in the file size. So, these have been recorded in multiple ddbj****.idx files, each of which at most has 1.5 GB storage capacity as follows, respectively. See also 6.2., 7.10., 7.11., 7.12. and 9. ------------------ Since release 62 ------------------ Release version number is introduced: DDBJ has started to include the item, 'version', for its release note, which indicates a version for its periodical release. It is expressed like '62.0', in which the digit(s) after the period is a version number. The reason for adding the version number is that a released data is sometimes revised due to urgent and necessary corrections. The number is increased by one every time when a revised periodical release is made public until the next release. Introduction of ENV division: Recently, the submissions of the sequences derived from environmental samples have rapidly increased. To accommodate such submissions, a new division, ENV, has been created (See also '3.1. Division categories'). This division contains the sequences obtained via direct molecular isolation such as PCR, DGGE, or any anonymous method. In the past, the sequences derived from environmental samples belonged to taxonomic divisions, mainly BCT. At DDBJ, the retrofit to transfer relevant entries from taxonomic divisions to the ENV division starts in the present release, and ends by the next periodical release. Please note that during this transitional period, some entries to be eventually placed in the ENV division will be found in other divisions. Strand information is removed: The strand information of LOCUS line in the flat file has been removed as shown below. See also '2.1. LOCUS line'. ---------------------------------------------------------------------------- Old (-rel. 61): 44-44 space 45-47 spaces, ss- (single-stranded), ds- (double-stranded), or ms- (mixed-stranded) New (rel. 62-): 44-47 spaces ---------------------------------------------------------------------------- ------------------ Since release 61 ------------------ The style of release note (this file) has been changed. Some entries have the sequential format for the secondary accession numbers in the ACCESSION line, in order to make the expression of secondary accession numbers in the past short. For example; ------------------------------------------------------------------------------ Before; ACCESSION AB000802 D85885 D85886 D85887 After; ACCESSION AB000802 D85885-D85887 ------------------------------------------------------------------------------ See also '2.3. ACCESSION line'. ------------------ Since release 60 ------------------ The cross-reference to the H-invitational has been included. ------------------ Since release 56 ------------------ The three data banks have agreed that the maximum length limitation (350 kb) of a submitted sequence be relaxed. The BASE COUNT line of the DDBJ flat file format has been changed, corresponding to the relaxation of the maximum sequence length restriction in the entry that had been practiced at DDBJ/EMBL/GenBank International Nucleotide Sequence Databases. In the BASE COUNT line of the DDBJ flat file, 6 digits had been allocated for each number of a, c, g, t and other bases in the sequence. Hereafter, in the new flat file format, 9 digits are allocated for each number of a, c, g and t, while the numbers of other bases are removed. In accordance with the relaxation of sequence length limitation, GenBank had already dropped the BASE COUNT line from their flat file format from GenBank Release 138 (Oct. 2003). We DDBJ have decided to maintain the BASE COUNT line in our flat file format from the view that GC contents are still important information to characterize the sequence. The changes in the BASE COUNT line are shown below. ---------------------------------------------------------------------------- Old (-rel. 55): 1 6 11 16 21 26 31 36 41 46 51 56 61 66 71 |----|----|----|----|----|----|----|----|----|----|----|----|----|----| BASE COUNT 123456 a 123456 c 123456 g 123456 t 123456 others New (rel. 56-): 1 6 11 16 21 26 31 36 41 46 51 56 61 66 71 |----|----|----|----|----|----|----|----|----|----|----|----|----|----| BASE COUNT 123456789 a 123456789 c 123456789 g 123456789 t ---------------------------------------------------------------------------- The SOURCE in the flat file is revisited and revised if necessary in accordance with the unified taxonomy database common to the three data banks. ------------------ Since release 54 ------------------ '/sequenced_mol' qualifier has been changed to '/mol_type' qualifier. We accordingly completed retrofitting the pertinent entries. This change was made on the agreement at the INSD collaborative meeting in 2002. ------------------ Since release 51 ------------------ The TPA (Third Party Annotation) dataset has been available. The dataset is a complement to the existing DDBJ/EMBL/GenBank database of the primary nucleotide sequences which were obtained from direct sequencing of cDNAs, ESTs, genomic DNAs etc. The format of LOCUS line in the flat file has been changed as shown below to adjust to the GenBank format. ------------------------------------------------------------------------------ Old (-rel. 50): LOCUS AB000001 660 bp DNA PLN 01-FEB-2001 New (rel. 51-): LOCUS AB000001 660 bp DNA linear PLN 01-FEB-2001 ------------------------------------------------------------------------------ ------------------ Since release 45 ------------------ The HTC (High Throughput cDNA) division has been included. This is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. ------------------ Since release 41 ------------------ The CON division has been included. This division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. ------------------ Since release 40 ------------------ The RNA division was terminated. The RNA data have been redistributed according to the category of the organism. Therefore, you will find a human RNA sequence, for example, in the HUM division. ------------------ Since release 37 ------------------ The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence. It is expressed like AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. ------------------ Since release 31 ------------------ We have started adopting the unified taxonomy database to unify the biological source of the sequence. The database is made up with scientific names, ID of unidentified organisms, and synthetic constructs etc. ------------------ Since release 30 ------------------ NID and PID were terminated. This change was made on the agreement at the INSD collaborative meeting in 1999. ------------------ Since release 28 ------------------ The HTG (High Throughput Genomic sequence) has been included. This division was created to cope with genome project teams which deal with a clone as a sequencing unit. We terminated the ORG (Organelle) division. Thus, if you are interested in human mitochondrial sequences, for example, you are now advised to refer to the HUM division. ------------------ Since release 27 ------------------ The GSS division has been included. GSS stands for Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. ------------------ Since release 25 ------------------ DDBJ release contains amino acid sequences that were translated from the corresponding nucleotide sequences of the database. In the translation we paid much attention to the fact that some species or organella have a codon different from the universal one, and used the proper codon table. ------------------ Since release 22 ------------------ The HUM division has been included. Human genome projects have probably been most productive and yielded a large number of sequences Thus, we have the human (HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. ------------------ Since release 12 ------------------ The EST (Expressed Sequence Tag) division has been included. The number of ESTs has been increasing at an enormous rate and is expected to be growing even more rapidly in the future. Thus, we created a division for ESTs ------------------ Since release 10 ------------------ The sequences submitted to GenBank or EMBL have been included in the release. 9. File list The files in this release are arranged in the following order with non-labeled format. ----------------------------------------------------------------------- file name file size ----------------------------------------------------------------------- ddbjrel.txt (DDBJ release note) 113329 ddbjacc1.idx (Accession number index file 1) 1499999983 ddbjacc2.idx (Accession number index file 2) 884555324 ddbjgen.idx (Gene name index file) 90190002 ddbjjou1.idx (Journal citation index file 1) 1499747699 ddbjjou2.idx (Journal citation index file 2) 1205958423 ddbjkey1.idx (Keyword phrase index file 1) 1399994002 ddbjkey2.idx (Keyword phrase index file 2) 1212835583 ----------------------------------------------------------------------- file name number of entries number of bases file size ----------------------------------------------------------------------- ddbjbct1.seq 26914 123860002 299027806 ddbjbct2.seq 3823 132608126 303033778 ddbjbct3.seq 90 137233845 309763965 ddbjbct4.seq 64041 106236192 299000950 ddbjbct5.seq 17738 116816947 299524340 ddbjbct6.seq 41677 121216299 299002136 ddbjbct7.seq 27506 131935751 301967144 ddbjbct8.seq 243 121901613 300037866 ddbjbct9.seq 73 135607162 299023973 ddbjbct10.seq 65 137266966 306791520 ddbjbct11.seq 67 138446098 299741421 ddbjbct12.seq 5613 129327059 299001788 ddbjbct13.seq 67443 106398512 299177774 ddbjbct14.seq 7637 18319051 48514129 ddbjenv1.seq 109362 84570643 299036976 ddbjenv2.seq 108007 92124679 299002965 ddbjenv3.seq 57440 54423545 161851145 ddbjest1.seq 89091 33671886 299001620 ddbjest2.seq 94344 37773125 299002548 ddbjest3.seq 95052 37040156 299002425 ddbjest4.seq 89215 28137921 299000672 ddbjest5.seq 93794 36046591 299001142 ddbjest6.seq 97166 38574744 299001070 ddbjest7.seq 98022 37885035 299002910 ddbjest8.seq 97489 37569834 299000844 ddbjest9.seq 97572 38631400 299003034 ddbjest10.seq 99257 38874489 299002841 ddbjest11.seq 97599 38941729 299002565 ddbjest12.seq 96522 42979729 299002819 ddbjest13.seq 103630 42406380 299001059 ddbjest14.seq 101801 40565473 299000492 ddbjest15.seq 97652 40611616 299000930 ddbjest16.seq 95506 42661098 299001388 ddbjest17.seq 95680 38810035 299000121 ddbjest18.seq 97208 41757319 299000091 ddbjest19.seq 96997 43280081 299002486 ddbjest20.seq 94001 38026280 299002458 ddbjest21.seq 103028 46931714 299001020 ddbjest22.seq 129305 58752609 299000390 ddbjest23.seq 121286 63958967 299001217 ddbjest24.seq 103668 59916062 299001424 ddbjest25.seq 84486 67134023 299001378 ddbjest26.seq 110434 67886076 299000220 ddbjest27.seq 120761 61713298 299000595 ddbjest28.seq 115564 71660266 299002433 ddbjest29.seq 96906 65404026 299000658 ddbjest30.seq 127493 70037083 299001711 ddbjest31.seq 109673 54890460 299002478 ddbjest32.seq 121471 55651963 299000055 ddbjest33.seq 87771 31945982 299002135 ddbjest34.seq 76720 20418031 299003605 ddbjest35.seq 85478 24816598 299001881 ddbjest36.seq 53185 14698420 299003952 ddbjest37.seq 53094 14699280 299000769 ddbjest38.seq 52969 13995407 299005145 ddbjest39.seq 111393 48080572 299000246 ddbjest40.seq 114622 54097606 299000127 ddbjest41.seq 102875 52508270 299000410 ddbjest42.seq 116140 57770108 299000237 ddbjest43.seq 117683 58783359 299001953 ddbjest44.seq 93372 39822242 299003315 ddbjest45.seq 89667 39754491 299000477 ddbjest46.seq 90870 38946968 299000754 ddbjest47.seq 104181 42175463 299000039 ddbjest48.seq 91328 35804844 299002391 ddbjest49.seq 84823 38012421 299000263 ddbjest50.seq 96716 44222868 299001333 ddbjest51.seq 95620 41717036 299000025 ddbjest52.seq 94901 32782345 299002722 ddbjest53.seq 107242 48634402 299003841 ddbjest54.seq 53270 15067994 299002397 ddbjest55.seq 52947 15303103 299002609 ddbjest56.seq 53106 16339042 299000451 ddbjest57.seq 53231 16349882 299000573 ddbjest58.seq 53150 16768831 299003924 ddbjest59.seq 53030 16281370 299000478 ddbjest60.seq 53203 16043832 299002201 ddbjest61.seq 53882 15985370 299001829 ddbjest62.seq 54029 16867618 299000500 ddbjest63.seq 54005 17080973 299004002 ddbjest64.seq 53418 15505545 298999922 ddbjest65.seq 51563 25331878 299003514 ddbjest66.seq 52764 28122271 299002148 ddbjest67.seq 55510 22858105 299003109 ddbjest68.seq 54422 24321289 299001567 ddbjest69.seq 55018 23437602 299004247 ddbjest70.seq 98455 57722463 299001723 ddbjest71.seq 96651 40602798 299002466 ddbjest72.seq 95150 36837551 299000308 ddbjest73.seq 93649 50706823 299002189 ddbjest74.seq 98596 54239380 299002469 ddbjest75.seq 98010 49864065 299000417 ddbjest76.seq 95463 52636668 299003061 ddbjest77.seq 91460 45935652 299000068 ddbjest78.seq 96117 46601650 299000136 ddbjest79.seq 91089 46602457 299000498 ddbjest80.seq 92860 56570940 299001272 ddbjest81.seq 89088 50018207 299001116 ddbjest82.seq 92685 52305957 299002016 ddbjest83.seq 93425 54546571 299002651 ddbjest84.seq 89233 55114283 299002043 ddbjest85.seq 90576 41040459 299002374 ddbjest86.seq 88318 41073882 299000629 ddbjest87.seq 86635 49474872 299002466 ddbjest88.seq 88149 55850831 299002323 ddbjest89.seq 95196 43528630 299000943 ddbjest90.seq 94763 37930758 299001039 ddbjest91.seq 94533 42152357 299001830 ddbjest92.seq 89633 42400274 299002936 ddbjest93.seq 94242 52490712 299000350 ddbjest94.seq 100264 59480887 299001999 ddbjest95.seq 90045 57326975 299003990 ddbjest96.seq 88251 56944987 299002510 ddbjest97.seq 89461 58065301 299001101 ddbjest98.seq 95333 56362719 299001634 ddbjest99.seq 93602 57096457 299001948 ddbjest100.seq 94663 63161766 299003199 ddbjest101.seq 93616 59282743 299001717 ddbjest102.seq 98846 42204166 299003116 ddbjest103.seq 99358 49899259 299001792 ddbjest104.seq 99824 54865406 299001713 ddbjest105.seq 85498 47611238 299001552 ddbjest106.seq 89941 47031925 299000228 ddbjest107.seq 86753 48929345 299002864 ddbjest108.seq 87548 51622884 299000733 ddbjest109.seq 92824 57024240 299001257 ddbjest110.seq 87173 49900183 299000199 ddbjest111.seq 91620 53680230 299000820 ddbjest112.seq 89597 54894900 299001691 ddbjest113.seq 83717 46789370 299000983 ddbjest114.seq 120604 66695513 299002318 ddbjest115.seq 85875 46160185 299000663 ddbjest116.seq 118532 62805163 299001547 ddbjest117.seq 127151 69017996 299001152 ddbjest118.seq 112456 64279726 299001162 ddbjest119.seq 98111 56333768 299000434 ddbjest120.seq 113169 69318305 299002177 ddbjest121.seq 115268 66705905 299001745 ddbjest122.seq 93998 55398919 299002642 ddbjest123.seq 85502 41632626 299001306 ddbjest124.seq 78664 35680860 299003825 ddbjest125.seq 76437 36654933 299000861 ddbjest126.seq 80391 40274878 299000582 ddbjest127.seq 87351 51300453 298999940 ddbjest128.seq 87005 56462683 299001888 ddbjest129.seq 97574 64226342 299002037 ddbjest130.seq 79263 41624474 299002963 ddbjest131.seq 81549 45384445 299001550 ddbjest132.seq 83966 42897369 299003643 ddbjest133.seq 81976 57513250 299003773 ddbjest134.seq 109496 54015238 299001895 ddbjest135.seq 103656 57419379 299001710 ddbjest136.seq 93806 53642674 299001719 ddbjest137.seq 92355 53472642 299001372 ddbjest138.seq 111614 59271623 298999984 ddbjest139.seq 97588 43674384 299001217 ddbjest140.seq 97858 47182685 299001746 ddbjest141.seq 107441 49524666 299001553 ddbjest142.seq 97766 41214274 299001431 ddbjest143.seq 95140 49736856 299003278 ddbjest144.seq 86818 53396402 299001348 ddbjest145.seq 77516 48649524 299000622 ddbjest146.seq 90373 47489534 299001249 ddbjest147.seq 97492 41710818 299002311 ddbjest148.seq 92790 54168366 299000222 ddbjest149.seq 88087 44833915 299000866 ddbjest150.seq 87226 57389644 299003389 ddbjest151.seq 88215 57658075 299001698 ddbjest152.seq 87613 44701467 299001638 ddbjest153.seq 88583 72259591 299001222 ddbjest154.seq 89453 46626303 299002228 ddbjest155.seq 90290 56702382 299000032 ddbjest156.seq 88523 72164608 299000031 ddbjest157.seq 82627 60751140 299001599 ddbjest158.seq 82192 60902892 299002700 ddbjest159.seq 83976 59052788 299000311 ddbjest160.seq 81675 60575924 299003313 ddbjest161.seq 81629 50359947 299003070 ddbjest162.seq 83453 46947478 299003591 ddbjest163.seq 89288 49476560 299001979 ddbjest164.seq 112100 69119516 299002366 ddbjest165.seq 91227 56128134 299001647 ddbjest166.seq 128879 80309740 299000625 ddbjest167.seq 132394 78843219 299000531 ddbjest168.seq 130688 80784658 299002027 ddbjest169.seq 129935 74713161 299000860 ddbjest170.seq 122868 59653796 299001912 ddbjest171.seq 111660 64034226 299000640 ddbjest172.seq 118114 53808786 299000545 ddbjest173.seq 90612 57771960 299000900 ddbjest174.seq 79794 49498550 299000707 ddbjest175.seq 86552 73533439 299002419 ddbjest176.seq 95460 68452987 299001463 ddbjest177.seq 95905 49427187 299003714 ddbjest178.seq 108302 75305341 299002836 ddbjest179.seq 81467 58581672 299001120 ddbjest180.seq 53160 20394029 298999930 ddbjest181.seq 49856 18483104 299001653 ddbjest182.seq 51797 17672535 299001247 ddbjest183.seq 49723 18317279 299002429 ddbjest184.seq 49833 19607005 299001257 ddbjest185.seq 49630 20679826 299000177 ddbjest186.seq 50735 17597439 299004427 ddbjest187.seq 51588 19509373 299002682 ddbjest188.seq 51297 20647927 299005265 ddbjest189.seq 48978 21478462 299004110 ddbjest190.seq 49337 20010502 299003944 ddbjest191.seq 49461 21328902 298999941 ddbjest192.seq 49870 19795434 299004124 ddbjest193.seq 49792 19492873 299001029 ddbjest194.seq 47176 32522032 299000915 ddbjest195.seq 65649 30740547 299001971 ddbjest196.seq 94056 51204083 299002674 ddbjest197.seq 120070 49267290 299002535 ddbjest198.seq 89927 52420613 299000630 ddbjest199.seq 87968 56933206 299002568 ddbjest200.seq 88096 56531445 299001742 ddbjest201.seq 87514 51768952 299001420 ddbjest202.seq 89480 52216645 299000686 ddbjest203.seq 88004 59814634 299000838 ddbjest204.seq 87048 43171605 299001903 ddbjest205.seq 126452 58988726 299001032 ddbjest206.seq 93259 52568628 299001877 ddbjest207.seq 84981 41068335 299003637 ddbjest208.seq 87695 50887313 299001106 ddbjest209.seq 92418 43895217 298999949 ddbjest210.seq 88916 51611547 299002053 ddbjest211.seq 87104 49195302 299001170 ddbjest212.seq 87302 48078891 299002026 ddbjest213.seq 106973 55650542 299002246 ddbjest214.seq 93902 58970611 299001077 ddbjest215.seq 98893 68947428 299002255 ddbjest216.seq 137546 61718618 299001318 ddbjest217.seq 100774 56950376 299000286 ddbjest218.seq 88683 56209053 299001761 ddbjest219.seq 94716 45475833 299001635 ddbjest220.seq 96546 39461102 299000870 ddbjest221.seq 85271 51009821 299000900 ddbjest222.seq 79023 50454727 299001944 ddbjest223.seq 89447 51057413 299000331 ddbjest224.seq 78676 51161948 299003479 ddbjest225.seq 100720 53661617 299002627 ddbjest226.seq 101905 52864315 299002180 ddbjest227.seq 107648 64442143 299000268 ddbjest228.seq 144988 65001262 299000162 ddbjest229.seq 114655 52656585 299003337 ddbjest230.seq 86853 46782345 299002007 ddbjest231.seq 94608 58618508 299000881 ddbjest232.seq 95474 49792746 299001868 ddbjest233.seq 91949 53615728 299001073 ddbjest234.seq 79053 47568679 299000975 ddbjest235.seq 68831 37440483 299000199 ddbjest236.seq 89724 63921196 299002955 ddbjest237.seq 88461 53143912 299000724 ddbjest238.seq 92811 52114350 299001141 ddbjest239.seq 82799 43281256 299005254 ddbjest240.seq 51232 25816628 299003058 ddbjest241.seq 51136 25857831 299003829 ddbjest242.seq 50426 27810410 299005211 ddbjest243.seq 50844 26616870 299002891 ddbjest244.seq 50411 27393642 299004728 ddbjest245.seq 51906 23078045 299002201 ddbjest246.seq 51922 22857967 299004223 ddbjest247.seq 51867 21660285 299004620 ddbjest248.seq 51845 21307577 299003819 ddbjest249.seq 52355 20079086 299000863 ddbjest250.seq 52005 20890158 299003470 ddbjest251.seq 52367 20925868 299004635 ddbjest252.seq 52075 20401109 299002328 ddbjest253.seq 52710 18950048 299004756 ddbjest254.seq 60612 27991528 298999987 ddbjest255.seq 73857 38637541 299002970 ddbjest256.seq 67834 31386657 299001034 ddbjest257.seq 69991 28238924 299000743 ddbjest258.seq 68614 29404518 299003724 ddbjest259.seq 93854 52908919 299002448 ddbjest260.seq 91113 69307030 299000743 ddbjest261.seq 108548 66824444 299001655 ddbjest262.seq 114756 69216187 299002770 ddbjest263.seq 106590 59634585 299003623 ddbjest264.seq 103372 55365194 299001036 ddbjest265.seq 84748 66629260 299001436 ddbjest266.seq 78767 60236431 299000960 ddbjest267.seq 82829 52296920 299003457 ddbjest268.seq 86885 53366030 299001618 ddbjest269.seq 96238 55300723 299001754 ddbjest270.seq 87950 47380157 299000008 ddbjest271.seq 83893 43650699 299008463 ddbjest272.seq 79544 46191584 299000538 ddbjest273.seq 95851 55886877 299001375 ddbjest274.seq 96514 51227124 299000727 ddbjest275.seq 88335 54795610 299000896 ddbjest276.seq 86607 54244911 299003479 ddbjest277.seq 98343 57654743 298999982 ddbjest278.seq 109512 63526137 299000906 ddbjest279.seq 95978 52249952 299000895 ddbjest280.seq 78685 47112098 299001932 ddbjest281.seq 92702 47356133 299002058 ddbjest282.seq 61186 31844309 299003343 ddbjest283.seq 89229 51278363 299001119 ddbjest284.seq 113594 59267962 299000026 ddbjest285.seq 100310 60293715 299002061 ddbjest286.seq 90262 59288805 299001224 ddbjest287.seq 87673 50956555 299002930 ddbjest288.seq 88326 44838930 299000861 ddbjest289.seq 100519 50274571 299001394 ddbjest290.seq 66559 48376557 299003984 ddbjest291.seq 83314 47795331 299000738 ddbjest292.seq 109281 66046711 299001670 ddbjest293.seq 101832 56678696 299002311 ddbjest294.seq 100203 57106421 299003562 ddbjest295.seq 73496 46016279 299000095 ddbjest296.seq 52777 26184889 299001305 ddbjest297.seq 101689 63291877 299000007 ddbjest298.seq 100464 55882679 299000071 ddbjest299.seq 89871 54907490 299000364 ddbjest300.seq 108151 66230840 299001253 ddbjest301.seq 95183 59059136 299002657 ddbjest302.seq 83914 52175782 299001877 ddbjest303.seq 91502 50998465 299000867 ddbjest304.seq 69938 43664810 299001324 ddbjest305.seq 105377 34393514 299002661 ddbjest306.seq 93871 51835505 299000471 ddbjest307.seq 84753 48139034 299001150 ddbjest308.seq 90978 49198952 299000216 ddbjest309.seq 90748 60238936 299002648 ddbjest310.seq 82437 53009822 299002685 ddbjest311.seq 100706 57954192 299002343 ddbjest312.seq 75413 44851136 299004081 ddbjest313.seq 91227 57753580 299000118 ddbjest314.seq 106293 62751539 299002145 ddbjest315.seq 90491 54371621 299003825 ddbjest316.seq 74868 52913501 299002504 ddbjest317.seq 73777 51915520 299002906 ddbjest318.seq 81047 51514539 299000985 ddbjest319.seq 84840 51264402 299000308 ddbjest320.seq 76320 48369454 299000040 ddbjest321.seq 75885 52148858 299002291 ddbjest322.seq 77207 53107540 299002803 ddbjest323.seq 64269 45885195 299001016 ddbjest324.seq 101934 52585804 299002345 ddbjest325.seq 85111 47260707 299002467 ddbjest326.seq 84847 46661706 299001800 ddbjest327.seq 84791 46947860 299000634 ddbjest328.seq 84897 46833152 299003216 ddbjest329.seq 84122 46895875 299002088 ddbjest330.seq 83657 46429064 299002199 ddbjest331.seq 84223 47787382 299002970 ddbjest332.seq 84046 46891041 299001871 ddbjest333.seq 81274 45702136 299000378 ddbjest334.seq 84280 47313732 299002459 ddbjest335.seq 84822 46829036 299001228 ddbjest336.seq 84665 46423838 299000483 ddbjest337.seq 85861 46941275 299002804 ddbjest338.seq 84988 46851588 299001960 ddbjest339.seq 84690 46605364 299002796 ddbjest340.seq 86761 46024552 299002354 ddbjest341.seq 99279 58724530 299000219 ddbjest342.seq 71440 32565257 299003420 ddbjest343.seq 75613 34771705 299001631 ddbjest344.seq 80268 50125318 299004498 ddbjest345.seq 66890 52057978 299002426 ddbjest346.seq 86773 55614232 299001953 ddbjest347.seq 75580 45402351 299002759 ddbjest348.seq 123405 65755087 299000038 ddbjest349.seq 115315 68185229 299001874 ddbjest350.seq 106469 71753873 299001222 ddbjest351.seq 59222 33579224 299000628 ddbjest352.seq 60479 75276507 299000617 ddbjest353.seq 87660 72070772 299000701 ddbjest354.seq 83361 50523361 299003309 ddbjest355.seq 92198 55229352 299000173 ddbjest356.seq 86543 55633587 299003668 ddbjest357.seq 80578 64179060 299003686 ddbjest358.seq 118962 56776946 299001484 ddbjest359.seq 126426 60573911 299001325 ddbjest360.seq 80304 59893757 299000810 ddbjest361.seq 72788 52167509 299003072 ddbjest362.seq 76570 51040251 299000098 ddbjest363.seq 84898 62514939 299002780 ddbjest364.seq 78569 57006096 299001042 ddbjest365.seq 66228 48949860 299002367 ddbjest366.seq 74286 52068369 299000162 ddbjest367.seq 79411 48231085 299000080 ddbjest368.seq 85936 55245699 299001583 ddbjest369.seq 72849 48908420 299003104 ddbjest370.seq 78557 57843624 299000692 ddbjest371.seq 76147 59085763 299001606 ddbjest372.seq 71921 52124341 299002223 ddbjest373.seq 72282 50470862 299002534 ddbjest374.seq 66909 45545909 299002112 ddbjest375.seq 75082 49518879 299000362 ddbjest376.seq 91511 55290954 299003751 ddbjest377.seq 89084 73412987 299000030 ddbjest378.seq 99805 64756865 299000223 ddbjest379.seq 62714 70727866 299001358 ddbjest380.seq 71096 65466370 299001536 ddbjest381.seq 81112 55950462 299001772 ddbjest382.seq 90655 51589641 299001196 ddbjest383.seq 106776 69921689 299001437 ddbjest384.seq 105069 65522390 299000239 ddbjest385.seq 79224 50848671 299000977 ddbjest386.seq 96206 64354096 299000823 ddbjest387.seq 104377 62501669 299002140 ddbjest388.seq 92733 74880461 299002966 ddbjest389.seq 89881 63259234 299004132 ddbjest390.seq 85791 64589121 299001932 ddbjest391.seq 83994 61205268 299001863 ddbjest392.seq 107908 60873140 299001834 ddbjest393.seq 105275 54013593 299000466 ddbjest394.seq 149179 58515453 299000249 ddbjest395.seq 101906 67411844 299004240 ddbjest396.seq 65091 64505854 299002357 ddbjest397.seq 118213 55698530 299001017 ddbjest398.seq 126549 47951179 299003482 ddbjest399.seq 81779 71543080 299003514 ddbjest400.seq 112413 70418835 299002658 ddbjest401.seq 99192 55029394 298999972 ddbjest402.seq 90451 63195127 299003362 ddbjest403.seq 96892 61328447 299002074 ddbjest404.seq 107383 66993010 299003163 ddbjest405.seq 95568 68468847 299000687 ddbjest406.seq 90813 66876018 299002177 ddbjest407.seq 109950 66497619 299000261 ddbjest408.seq 98258 55585963 299002194 ddbjest409.seq 105140 63804678 299002467 ddbjest410.seq 94910 72317276 299000813 ddbjest411.seq 91689 56050075 299000083 ddbjest412.seq 128930 59878230 299001664 ddbjest413.seq 147107 65220029 299000911 ddbjest414.seq 164462 70848652 299000777 ddbjest415.seq 135930 70008127 299000444 ddbjest416.seq 103239 66045181 299000661 ddbjest417.seq 107328 11138222 299000970 ddbjest418.seq 132141 52445516 298999974 ddbjest419.seq 157334 77605946 299001479 ddbjest420.seq 83505 56349979 299000949 ddbjest421.seq 94405 60760590 299002587 ddbjest422.seq 89064 62109826 299002550 ddbjest423.seq 97203 58054221 299002604 ddbjest424.seq 88381 67943190 299000620 ddbjest425.seq 97042 37895885 299001232 ddbjest426.seq 91311 33749006 299000979 ddbjest427.seq 93503 33241914 299001995 ddbjest428.seq 100007 34581516 299001940 ddbjest429.seq 92006 35679751 299002222 ddbjest430.seq 78012 29759093 250131143 ddbjgss1.seq 104234 75887466 298999970 ddbjgss2.seq 101430 70750069 299000513 ddbjgss3.seq 107153 59646114 299003066 ddbjgss4.seq 79801 68555738 299001997 ddbjgss5.seq 80558 66938908 299000043 ddbjgss6.seq 81280 65461018 299000944 ddbjgss7.seq 84065 67356082 299001332 ddbjgss8.seq 97853 75267912 299003019 ddbjgss9.seq 100912 47424260 299002897 ddbjgss10.seq 103175 72168787 299000208 ddbjgss11.seq 85628 71406585 299000227 ddbjgss12.seq 82333 71229929 299000445 ddbjgss13.seq 73033 68993304 299001088 ddbjgss14.seq 108541 52184096 299001168 ddbjgss15.seq 105267 41664131 299002032 ddbjgss16.seq 113981 49273325 299002006 ddbjgss17.seq 109347 52337822 299000351 ddbjgss18.seq 99683 52955927 299000454 ddbjgss19.seq 99552 49650538 298999970 ddbjgss20.seq 97288 49908775 299002168 ddbjgss21.seq 96580 47969039 299001548 ddbjgss22.seq 93136 52251248 299002121 ddbjgss23.seq 92119 47819620 299002462 ddbjgss24.seq 91824 48901978 299002612 ddbjgss25.seq 95395 64039598 299001315 ddbjgss26.seq 91304 41012172 299002080 ddbjgss27.seq 96579 55364731 299002157 ddbjgss28.seq 90633 44426908 299001719 ddbjgss29.seq 74724 36544317 299000098 ddbjgss30.seq 73419 35654102 299003756 ddbjgss31.seq 76523 33515284 299000118 ddbjgss32.seq 82350 48407231 299003911 ddbjgss33.seq 74951 40229644 299002499 ddbjgss34.seq 90647 47665795 299000062 ddbjgss35.seq 75238 30773758 299000343 ddbjgss36.seq 90101 42269645 299000838 ddbjgss37.seq 74181 40838100 299000565 ddbjgss38.seq 95978 51391795 299001444 ddbjgss39.seq 91635 58464130 299001911 ddbjgss40.seq 100275 49901127 299002009 ddbjgss41.seq 95623 52145881 299002222 ddbjgss42.seq 107771 66403689 298999942 ddbjgss43.seq 111264 72483694 299002286 ddbjgss44.seq 109398 60945504 299002130 ddbjgss45.seq 108654 51247892 299000912 ddbjgss46.seq 106379 45281225 299000975 ddbjgss47.seq 110055 73484018 299002161 ddbjgss48.seq 114144 64814951 299003156 ddbjgss49.seq 109693 62418655 299000856 ddbjgss50.seq 96557 67462071 299000934 ddbjgss51.seq 91983 60799298 299000699 ddbjgss52.seq 98162 57531405 299002469 ddbjgss53.seq 101609 56144428 299000468 ddbjgss54.seq 109205 77173340 299002243 ddbjgss55.seq 104655 74995125 299000290 ddbjgss56.seq 117699 75789150 299000602 ddbjgss57.seq 105705 65534788 299002870 ddbjgss58.seq 91276 47257417 299000460 ddbjgss59.seq 116450 66291292 299002097 ddbjgss60.seq 110336 55241713 299000092 ddbjgss61.seq 107293 72271574 299002057 ddbjgss62.seq 92822 100140763 299002265 ddbjgss63.seq 108138 89878002 299001011 ddbjgss64.seq 103394 68902149 299000661 ddbjgss65.seq 82472 57387963 299002157 ddbjgss66.seq 107069 79583666 299000798 ddbjgss67.seq 108945 72431017 299001169 ddbjgss68.seq 109923 68269690 299001747 ddbjgss69.seq 114006 76596398 299002020 ddbjgss70.seq 128224 68178559 298999978 ddbjgss71.seq 127813 68717364 299000603 ddbjgss72.seq 129144 66976781 299002275 ddbjgss73.seq 129488 66525504 299002058 ddbjgss74.seq 129974 65888965 299001404 ddbjgss75.seq 128938 67245425 299002102 ddbjgss76.seq 120201 78590964 299002046 ddbjgss77.seq 113899 89667016 299002169 ddbjgss78.seq 112073 88561304 299000442 ddbjgss79.seq 111201 86970684 299000082 ddbjgss80.seq 114424 60225156 299000269 ddbjgss81.seq 118278 35471940 299002394 ddbjgss82.seq 112106 48969437 299000781 ddbjgss83.seq 100377 64653347 299000966 ddbjgss84.seq 112340 77968347 299001536 ddbjgss85.seq 100084 82515962 299001566 ddbjgss86.seq 100863 95198353 299002856 ddbjgss87.seq 107779 62296585 299000620 ddbjgss88.seq 101345 54782656 299002566 ddbjgss89.seq 103243 65437209 299001302 ddbjgss90.seq 97495 73620327 299001897 ddbjgss91.seq 104570 72001291 299000741 ddbjgss92.seq 108748 72408809 299000384 ddbjgss93.seq 109147 68127323 299001180 ddbjgss94.seq 107503 85960355 299000117 ddbjgss95.seq 139624 84724994 299002108 ddbjgss96.seq 136291 88005931 299001312 ddbjgss97.seq 118271 65181482 299003248 ddbjgss98.seq 101929 65488921 299001055 ddbjgss99.seq 116193 78963683 299001625 ddbjgss100.seq 123360 88764209 299001529 ddbjgss101.seq 121535 91053278 299001049 ddbjgss102.seq 120451 92310274 299000662 ddbjgss103.seq 126778 80268644 299000620 ddbjgss104.seq 97778 55361552 299001431 ddbjgss105.seq 95124 57481785 299000137 ddbjgss106.seq 94998 57721167 299002758 ddbjgss107.seq 94457 58593457 299002636 ddbjgss108.seq 95043 57372333 299000523 ddbjgss109.seq 104667 69625023 299002025 ddbjgss110.seq 106218 70868634 299001221 ddbjgss111.seq 104576 66251209 298999931 ddbjgss112.seq 107813 66569965 299000637 ddbjgss113.seq 101449 74512257 299000876 ddbjgss114.seq 118946 66469664 299000511 ddbjgss115.seq 100459 63845290 299001111 ddbjgss116.seq 110228 78041316 299002331 ddbjgss117.seq 102955 72078895 299002280 ddbjgss118.seq 97794 57940404 299000019 ddbjgss119.seq 119261 66374566 299000062 ddbjgss120.seq 108442 69635985 299000637 ddbjgss121.seq 110348 71516167 299000942 ddbjgss122.seq 99223 80643192 299002424 ddbjgss123.seq 96109 52281720 299000768 ddbjgss124.seq 116332 58015085 299001914 ddbjgss125.seq 91771 81423954 299000093 ddbjgss126.seq 100768 79631310 299001184 ddbjgss127.seq 100019 69812304 299000658 ddbjgss128.seq 100793 68845006 299002611 ddbjgss129.seq 100652 69139806 299002778 ddbjgss130.seq 101389 70104983 299000834 ddbjgss131.seq 107737 73204435 299002370 ddbjgss132.seq 94373 75420981 299002903 ddbjgss133.seq 87315 70522959 299000826 ddbjgss134.seq 98084 88163821 299001325 ddbjgss135.seq 97921 73670317 299000667 ddbjgss136.seq 105298 66227133 299000502 ddbjgss137.seq 119792 73517935 299001891 ddbjgss138.seq 115646 77090121 299000754 ddbjgss139.seq 111835 63352627 299000317 ddbjgss140.seq 99982 76257744 299000941 ddbjgss141.seq 149652 77111664 299001661 ddbjgss142.seq 122763 77391011 299000312 ddbjgss143.seq 78002 52343928 299002501 ddbjgss144.seq 56265 39177189 183284222 ddbjhtc1.seq 42057 65385579 299003883 ddbjhtc2.seq 33864 75482097 299003746 ddbjhtc3.seq 33210 80445828 299008390 ddbjhtc4.seq 81436 51461068 299004416 ddbjhtc5.seq 85774 84749849 299000959 ddbjhtc6.seq 77064 92866071 299001309 ddbjhtc7.seq 75820 78996892 299002943 ddbjhtc8.seq 11992 9929028 36295907 ddbjhtg1.seq 1565 225583934 299164527 ddbjhtg2.seq 3362 221544098 299213999 ddbjhtg3.seq 3043 223640417 299074971 ddbjhtg4.seq 1891 223324222 299016858 ddbjhtg5.seq 1522 221543129 299161697 ddbjhtg6.seq 1499 221653080 299097989 ddbjhtg7.seq 1537 221169527 299029828 ddbjhtg8.seq 1333 225419722 299032491 ddbjhtg9.seq 1751 218804499 299156905 ddbjhtg10.seq 1142 228873594 299088931 ddbjhtg11.seq 898 230074050 299235772 ddbjhtg12.seq 888 229762209 299000503 ddbjhtg13.seq 970 229656912 299037386 ddbjhtg14.seq 924 229949569 299277856 ddbjhtg15.seq 2147 209634381 299033644 ddbjhtg16.seq 1411 222475707 299007746 ddbjhtg17.seq 993 228889031 299060741 ddbjhtg18.seq 1032 228324780 299060995 ddbjhtg19.seq 1062 228365867 299208609 ddbjhtg20.seq 999 228489420 299103321 ddbjhtg21.seq 934 229847328 299369554 ddbjhtg22.seq 1031 228708996 299131150 ddbjhtg23.seq 1094 227770454 299026032 ddbjhtg24.seq 1105 227814989 299150634 ddbjhtg25.seq 1114 227709251 299063066 ddbjhtg26.seq 1031 228823721 299028214 ddbjhtg27.seq 1132 227183027 299103567 ddbjhtg28.seq 1062 228626676 299301812 ddbjhtg29.seq 991 229460842 299207451 ddbjhtg30.seq 1043 228633037 299136824 ddbjhtg31.seq 1159 227467123 299155499 ddbjhtg32.seq 1120 227873323 299244612 ddbjhtg33.seq 1275 226098371 299034759 ddbjhtg34.seq 1404 224164747 299006852 ddbjhtg35.seq 1566 224050323 299060763 ddbjhtg36.seq 1383 224386900 299195624 ddbjhtg37.seq 1334 228956209 299063299 ddbjhtg38.seq 1505 228228533 299178991 ddbjhtg39.seq 1401 228741222 299025451 ddbjhtg40.seq 1251 228505106 299335076 ddbjhtg41.seq 1180 227312252 299153047 ddbjhtg42.seq 1254 226663425 299067025 ddbjhtg43.seq 1071 226945999 299314312 ddbjhtg44.seq 1253 226843719 299260192 ddbjhtg45.seq 1175 226880951 299140607 ddbjhtg46.seq 1113 226070912 299010395 ddbjhtg47.seq 1155 225901770 299054326 ddbjhtg48.seq 1279 225816473 299026248 ddbjhtg49.seq 1195 226512055 299224668 ddbjhtg50.seq 1330 222811868 299037135 ddbjhtg51.seq 1236 226036354 299253815 ddbjhtg52.seq 1228 225992643 299159952 ddbjhtg53.seq 1170 226147515 299157949 ddbjhtg54.seq 1338 225949456 299160815 ddbjhtg55.seq 1462 222251973 299012846 ddbjhtg56.seq 1488 221841036 299270880 ddbjhtg57.seq 1491 220666324 299108989 ddbjhtg58.seq 1491 220887988 299150526 ddbjhtg59.seq 1654 222755858 299075265 ddbjhtg60.seq 1550 224195571 299119013 ddbjhtg61.seq 1354 228976383 299162734 ddbjhtg62.seq 1343 229649813 299130814 ddbjhtg63.seq 1442 229628997 299142169 ddbjhtg64.seq 1465 228967009 299173593 ddbjhtg65.seq 1381 228425019 299116384 ddbjhtg66.seq 1689 228995311 299015702 ddbjhtg67.seq 1175 231801125 299106111 ddbjhtg68.seq 962 216627451 299081210 ddbjhtg69.seq 1371 231290247 299092112 ddbjhtg70.seq 1396 230117050 299013707 ddbjhtg71.seq 399 49214227 64308305 ddbjhum1.seq 16772 186921819 299013884 ddbjhum2.seq 1658 213582920 299098834 ddbjhum3.seq 1627 223346183 299057656 ddbjhum4.seq 1416 216661170 299005990 ddbjhum5.seq 1460 214713491 299111965 ddbjhum6.seq 1487 213867725 299058240 ddbjhum7.seq 1571 208553061 299123886 ddbjhum8.seq 1678 216824508 299077458 ddbjhum9.seq 1554 213709097 299105151 ddbjhum10.seq 1840 214111448 299074909 ddbjhum11.seq 1941 213711455 299081377 ddbjhum12.seq 35876 163902546 299000101 ddbjhum13.seq 69970 97116849 299004640 ddbjhum14.seq 19115 169993650 299073817 ddbjhum15.seq 2890 219569934 299114449 ddbjhum16.seq 2022 222925179 299106992 ddbjhum17.seq 2505 220559622 299067016 ddbjhum18.seq 11267 197680285 299070703 ddbjhum19.seq 1731 219804437 299080937 ddbjhum20.seq 51398 114508812 299004766 ddbjhum21.seq 37788 78541665 299004598 ddbjhum22.seq 63287 134401417 299001671 ddbjhum23.seq 63035 102375016 261671758 ddbjinv1.seq 19550 193131481 299013816 ddbjinv2.seq 1200 198015432 299139846 ddbjinv3.seq 70333 105868200 299002552 ddbjinv4.seq 71718 104036010 299001788 ddbjinv5.seq 93245 85767306 299001204 ddbjinv6.seq 79959 95983503 299001453 ddbjinv7.seq 52121 116952093 285795814 ddbjmam1.seq 57826 142127855 299003338 ddbjmam2.seq 48006 77913653 207835377 ddbjpat1.seq 253014 87770034 299000052 ddbjpat2.seq 212254 101235929 299000934 ddbjpat3.seq 178455 122694288 299018754 ddbjpat4.seq 209606 99721948 299000221 ddbjpat5.seq 165568 104772621 299000824 ddbjpat6.seq 135820 123796999 299000016 ddbjpat7.seq 160377 106071175 299000987 ddbjpat8.seq 148517 110413371 299000249 ddbjpat9.seq 174152 86839417 299000213 ddbjpat10.seq 136396 63579464 299003487 ddbjpat11.seq 121826 63731781 299001158 ddbjpat12.seq 139779 59995614 299001823 ddbjpat13.seq 151057 74949317 299000675 ddbjpat14.seq 166693 64097476 299001705 ddbjpat15.seq 152708 110201943 299000089 ddbjpat16.seq 140971 120872439 299000823 ddbjpat17.seq 137101 118490508 299000427 ddbjpat18.seq 141008 119417413 299001421 ddbjpat19.seq 119888 107701516 299001789 ddbjpat20.seq 114843 99750169 299003739 ddbjpat21.seq 140056 73128611 299000278 ddbjpat22.seq 98809 32021773 135059703 ddbjphg.seq 3134 20987362 51414480 ddbjpln1.seq 40853 145248157 299021321 ddbjpln2.seq 1550 201890292 299104839 ddbjpln3.seq 4042 193592517 299001945 ddbjpln4.seq 89580 93267609 299001014 ddbjpln5.seq 88288 90729871 299001096 ddbjpln6.seq 38885 61886264 299000585 ddbjpln7.seq 22854 162750429 299137505 ddbjpln8.seq 1543 201423264 299062194 ddbjpln9.seq 1133 216272974 306669200 ddbjpln10.seq 9 264008642 334543423 ddbjpln11.seq 68839 97882525 299000726 ddbjpln12.seq 89660 93187599 299002945 ddbjpln13.seq 68046 109517084 301619550 ddbjpln14.seq 62379 119553716 299000260 ddbjpln15.seq 74052 105330409 299002485 ddbjpln16.seq 5300 13596349 32941241 ddbjpri1.seq 8673 211924691 299008798 ddbjpri2.seq 25950 194608732 299002025 ddbjpri3.seq 11084 91470291 138888656 ddbjrod1.seq 10688 202911129 299230987 ddbjrod2.seq 1107 207245896 299175665 ddbjrod3.seq 1069 207809501 299162374 ddbjrod4.seq 1109 208825081 299260434 ddbjrod5.seq 1163 214634406 299246451 ddbjrod6.seq 1164 215353272 299085291 ddbjrod7.seq 1181 217266892 299025251 ddbjrod8.seq 1197 218451417 299273510 ddbjrod9.seq 1220 221080288 299135122 ddbjrod10.seq 1146 220339004 299028094 ddbjrod11.seq 1217 222311070 299060828 ddbjrod12.seq 1144 217895057 299065590 ddbjrod13.seq 1157 220571006 299110445 ddbjrod14.seq 18316 196392019 299001349 ddbjrod15.seq 19142 195055901 299091702 ddbjrod16.seq 1435 230966313 299117389 ddbjrod17.seq 7313 222001479 299002031 ddbjrod18.seq 47101 82045251 299008462 ddbjrod19.seq 9468 198398019 299112820 ddbjrod20.seq 152700 54235695 299001829 ddbjrod21.seq 31616 36169288 113526885 ddbjsts1.seq 97007 44484585 299000761 ddbjsts2.seq 95616 48313240 299002666 ddbjsts3.seq 96076 40248522 299002038 ddbjsts4.seq 64651 38037997 299002007 ddbjsts5.seq 64932 37776855 299001796 ddbjsts6.seq 64682 38091108 299000911 ddbjsts7.seq 66516 45625695 299002078 ddbjsts8.seq 68365 52420445 299000664 ddbjsts9.seq 68372 52025440 299000051 ddbjsts10.seq 72888 49661703 299000231 ddbjsts11.seq 102322 41593181 299000332 ddbjsts12.seq 21608 8235068 52786795 ddbjsyn.seq 35186 47172944 152568019 ddbjuna.seq 212 114823 435629 ddbjvrl1.seq 85832 77321686 299001369 ddbjvrl2.seq 84553 76917583 299001393 ddbjvrl3.seq 82439 81277954 299013216 ddbjvrl4.seq 71866 85978156 299001857 ddbjvrl5.seq 59204 59603342 211635124 ddbjvrt1.seq 43494 164600472 299001708 ddbjvrt2.seq 44501 158096221 299097597 ddbjvrt3.seq 74050 114379757 299000936 ddbjvrt4.seq 52862 81909646 299054599 ddbjvrt5.seq 1435 230714503 299030105 ddbjvrt6.seq 1528 230354903 299149392 ddbjvrt7.seq 11533 214146190 299093657 ddbjvrt8.seq 13628 210779968 299085646 ddbjvrt9.seq 52063 151344659 299004071 ddbjvrt10.seq 16360 15582280 53154065 ------------------------------------------------------------------------------ Total 61144621 65443024193 234255356860 ddbjcon1.seq 546785 0 1490020998 ddbjcon2.seq 289146 0 657959067 ddbjtpa.seq 5119 19242841 40832467 The entries and bases in the CON division and TPA dataset are not counted in the numbers given on the top of the release note or 'Total' on the above table.