DNA Data Bank of Japan DNA Database Release 88.0, Dec. 2011, including 145,861,965 entries, 134,956,109,049 bases Last published date in the present release: November 25, 2011 ------------------------------------------------------------------------------- Table of contents ------------------------------------------------------------------------------- 1. Introduction 1.1. Announcement for changes in the present release 1.2. Announcement for the forthcoming changes 2. DDBJ flat file format 2.1. LOCUS line 2.2. DEFINITION line 2.3. ACCESSION line 2.4. VERSION line 2.5. KEYWORDS line 2.6. SOURCE line 2.7. REFERENCE line 2.8. COMMENT line 2.9. FEATURES line 2.10. BASE COUNT line 2.11. ORIGIN line 3. Division categories 3.1. Notice for patent related sequence data 4. DDBJ staff 5. Acknowledgment 6. Disclaimer 7. File categories 8. Sample of the contents in each file 8.1. Part of the contents in the file 'ddbjbct1.seq' 8.2. Part of the contents in the accession number index file 'ddbjacc1.idx' 8.3. Part of the contents in the keyword phrase index file 'ddbjkey1.idx' 8.4. Part of the contents in the journal citation index file 'ddbjjou1.idx' 8.5. Part of the contents in the gene name index 'ddbjgen.idx' 9. Release history 10. File list ------------------------------------------------------------------------------- 1. Introduction The present release contains the newest data prepared by the DNA Data Bank of Japan (DDBJ), GenBank (*), and EMBL-Bank/European Bioinformatics Institute (EMBL-Bank/EBI) as of November 25, 2011. This unified database was made possible thanks to the international collaboration among the three data banks. All the entries have accordingly been annotated using the feature keys common to them. In 2005, DDBJ, EMBL-Bank and GenBank agreed to call their collaboration "the International Nucleotide Sequence Database Collaboration (INSDC); http://www.insdc.org " and to call the unified nucleotide sequence database "the International Nucleotide Sequence Database (INSD)". *'GenBank' is a trademark of NIH, USA, and is operated by National Center for Biotechnology Information (NCBI) at NIH. 1.1. Announcement for changes in the present release Revision of the DDBJ/EMBL/GenBank Feature Table: Definition: Following the agreement at the INSD collaborative meeting in 2011, the document, DDBJ/EMBL/GenBank Feature Table: Definition, was revised. See also '2.9. FEATURES line' below. The revised points are introduced in advance on the following URL; http://www.ddbj.nig.ac.jp/insdc/icm2011-e.html#ft Please note that during this transitional period, some entries will be retrofitted. 1.2. Announcement for the forthcoming changes DDBJ will postpone making up its periodical release 89 from March to June: Since DDBJ is planning to improve its systems substantially, during the first quarter in 2012, DDBJ will skip to make up its next periodical release in March 2012. So, DDBJ periodical release 89 will be prepared in June 2012. 2. DDBJ flat file format The database is a collection of "entry" which is the unit of the data. The entries submitted to databanks were processed and publicized according to the DDBJ format for distribution (flat file). The flat file includes the sequence and the information of submitters, references, source organisms, and "feature" information, etc. The items of the DDBJ flat file are explained at following; ------------------------------------------------------------------------------- LOCUS AB000000 450 bp mRNA linear HUM 08-JUL-2002 DEFINITION Homo sapiens GAPD mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds. ACCESSION AB000000 VERSION AB000000.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 450) AUTHORS Mishima,H. and Shizuoka,T. TITLE Direct Submission JOURNAL Submitted (30-NOV-2000) to the DDBJ/EMBL/GenBank databases. Contact:Hanako Mishima National Institute of Genetics, DNA Data Bank of Japan; 1111, Yata, Mishima, Shizuoka 411-8540, Japan REFERENCE 2 AUTHORS Mishima,H., Shizuoka,T. and Fuji,I. TITLE Glyceraldehyde-3-phosphate dehydrogenase expressed in human liver JOURNAL Unpublished (2002) COMMENT Human cDNA sequencing project. FEATURES Location/Qualifiers source 1..450 /chromosome="12" /clone="GT200015" /clone_lib="lambda gt11 human liver cDNA (GeneTech. No.20)" /map="12p13" /mol_type="mRNA" /organism="Homo sapiens" /tissue_type="liver" CDS 86..>450 /codon_start=1 /gene="GAPD" /product="glyceraldehyde-3-phosphate dehydrogenase" /protein_id="BAA12345.1" /transl_table=1 /translation="MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTDYMT YMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVTVFGCRNPKEIPWGETSAEFVVEYTG VFTDKDKAVAQLKGGAKKV" BASE COUNT 102 a 119 c 131 g 98 t ORIGIN 1 cccacgcgtc cggtcgcatc gcacttgtag ctctcgaccc ccgcatctca tccctcctct 61 cgcttagttc agatcgaaat cgcaaatggc gaagattaag atcgggatca atgggttcgg 121 gaggatcggg aggctcgtgg ccagggtggc cctgcagagc gacgacgtcg agctcgtcgc 181 cgtcaacgac cccttcatca ccaccgacta catgacatac atgttcaagt atgacactgt 241 gcacggccag tggaagcatc atgaggttaa ggtgaaggac tccaagaccc ttctcttcgg 301 tgagaaggag gtcaccgtgt tcggctgcag gaaccctaag gagatcccat ggggtgagac 361 tagcgctgag tttgttgtgg agtacactgg tgttttcact gacaaggaca aggccgttgc 421 tcaacttaag ggtggtgcta agaaggtctg // ------------------------------------------------------------------------------- 2.1. LOCUS line The format of LOCUS line in the flat file is shown below; --------- -------- Positions Contents --------- -------- 01-05 'LOCUS' 06-12 spaces 13-28 Locus name 29-29 space 30-40 Length of sequence, right-justified 41-41 space 42-43 'bp' 44-47 spaces 48-54 DNA, RNA, mRNA, rRNA, tRNA or cRNA, left justified 55-55 space 56-63 'linear' followed by two spaces, or 'circular' 64-64 space 65-67 The division code (see '3.1. Division categories') 68-68 space 69-79 Date, in the form dd-MMM-yyyy (e.g., 08-JUL-2002) ------------------------------------------------------------------------------ 2.2. DEFINITION line The definition briefly describes the information of gene(s). "DEFINITION" is constructed by each of the three data banks. 2.3. ACCESSION line This line shows accession number of the entry data. A unique accession number is issued to the data submitter by each of the three data banks. The accession number is composed of 1 alphabet character and 5 digits (ex. A12345) or 2 alphabet characters and 6 digits (ex. AB123456). The former style was used in 1980s, but later the latter style was introduced because of data explosion. All the entries designated by the accession numbers with the prefixes given below have been collected and processed by DDBJ, and the rest have been done by GenBank and EMBL-Bank/EBI. ------------------------------------------------------------------------------- C, D, E, AB, AG, AK, AP, AT, AU, AV, BA, BB, BD, BJ, BP, BS, BW, BY, CI, CJ, DA, DB, DC, DD, DE, DF, DG, DH, DI, DJ, DK, DL, DM, FS, FT, FU, FV, FW, FX, FY, FZ, GA, GB, HV, HX ------------------------------------------------------------------------------- You can find the list of the prefixes of the accession numbers at the following URL; http://www.ddbj.nig.ac.jp/sub/prefix.html If multiple entries are united to an entry, or if an entry is extensively modified after the submission, the responsible data banks may assign a new accession number to it. In these cases, the new accession number is called the primary accession number, and the old accession number(s) is/are called the secondary accession number(s). In the flat file, the primary accession number is indicated first, then the secondary accession number(s) follows. You can find the same updated entry with both the primary and the secondary accession numbers. 2.4. VERSION line This line consists of an accession number and a version number, like "AB123456.1", in which the digit(s) after the period is a version number. The data open to public for the first time is version number as "1". The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. 2.5. KEYWORDS line The data banks describe this line, if necessary. In many cases, the categories of the data (EST, HTG etc.), gene names and product names included in "KEYWORDS". 2.6. SOURCE line This line shows the scientific name (and a corresponding common name, if defined as "Genbank common name" in taxonomy database) on organism from which the sequence is obtained and an organelle type if the sequence is derived from an organelle other than the nucleus. 2.7. REFERENCE line The information on the submitters and references related to the submitted sequence is indicated in REFERENCE line. 2.8. COMMENT line. The information about an entry that cannot be described using FEATURES or the other fields. 2.9. FEATURES line Biological features of a submitted sequence data are described with "Feature" key (the biological nature of the annotated feature), "Location" (the region of the sequence which corresponds to Feature), and "Qualifier" (supplementary information about Feature). The "Feature" and "Qualifier" keys used in the present release is defined by DDBJ/EMBL/GenBank Feature Table: Definition Version 10.0 (Dec, 2011). The document is continuously updated every half year, in principle. You can find its newest version on URL; http://www.ddbj.nig.ac.jp/FT/full_index.html 2.10. BASE COUNT line In the BASE COUNT line of the DDBJ flat file, 9 digits are allocated for each number of a (adenine), c (cytosine), g(guanine) and t (thymine). In the case of RNA sequence, uracil is indicated as "t" according to the rule of the international nucleotide database. 2.11. ORIGIN line The sequence data starts from the next line of ORIGIN. The sequence is indicated as lower case letters, delimited by space per 10 bases, starts a new line by 60 bases. The numbers described at left side of lines mean the ordinal number of the top base of the line. 3. Division categories The present release is divided into 21 categories, called 'division', of organisms and others. The contents of the 21 divisions are shown in the following. See also '7. File categories' and '10. File list' below. HUM; human PRI; primates (other than human) ROD; rodents MAM; mammals (other than primates and rodents) VRT; vertebrates (other than mammals) INV; invertebrates (animals other than vertebrates) PLN; plants, fungi, plastids (eukaryotes other than animals) BCT; bacteria (including both Eubacteria and Archaea) VRL; viruses PHG; bacteriophages ENV; sequences obtained via environmental sampling methods SYN; synthetic constructs (artificially constructed sequences) EST; expressed sequence tags; short single pass cDNA sequences GSS; genome survey sequences; short single pass genomic sequences TSA; transcriptome shotgun assemblies HTC; high throughput cDNA sequences; The sequence submitted from cDNA sequencing projects except for EST. This division is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. HTG; high throughput genomic sequences The sequence submitted mainly from genome sequencing projects which regarded a clone as a sequencing unit. STS; sequence tagged sites The tag site for genome sequencing. The information of chromosome, map, is mandatory for this division. PAT; sequence data related to patent applications The data those which the Japan Patent Office (JPO), United States Patent and Trademark Office (USPTO), the European Patent Office (EPO), and Korean Intellectual Property Office (KIPO) collected, processed and released. See also '3.1. Notice for patent related sequence data' below. UNA; the data not annotated The UNA division is not used for recently submitted sequences. CON; Contig / Constructed To conjugate a series of entries, such as those submitted from a genome project, each of the three data banks constructs an entry and assign an accession number to a large scale sequence dataset. Such entries are classified into the CON division. The entry in the CON division has the information of joined accession numbers instead of the sequence data. The corresponding entries of the CON entry have been submitted to other divisions. The entries and bases in the CON division are not counted in the released numbers given on the top of the release note. 3.1. Notice for patent related sequence data This release includes PAT division for patent related sequence data as described above. The data those which Japan Patent Office (JPO), United States Patent and Trademark Office (USPTO), European Patent Office (EPO), and Korean Intellectual Property Office (KIPO) collected, processed and released. Sequence data in patent claims to KIPO were properly processed and submitted to DDBJ by Byungwook Lee at Korean Bioinformation Center in collaboration with KIPO. The prefixes of accession numbers for the patent related sequence data are shown below; JPO : E, BD, DD, DJ, DL, DM, FU, FV, FW, FZ, GB, HV KIPO : DI USPTO: I, AR, DZ, EA, GC, GP, GV, GX, GY EPO : A, AX, CQ, CS, FB, GM, GN, HA, HB, HC, HD, HH, HI, JA Note also that unauthorized use of the patented data may cause legal issues for which DDBJ takes no responsibility. See also '6. Disclaimer'. 4. DDBJ staff This release is published by the following DDBJ staff. Jun Mashima, Hideo Aono, Yoshiyuki Ehara, Mayumi Ejima, Masato Endo, Masahiro Fujimoto, Tatsukazu Hashimoto, Fumie Hirata, Nobuhiro Hoshi, Fumiyasu Ishikawa, Kazuya Kanno, Shingo Kawahara, Takahiro Kazama, Satoshi Kitadate, Yuichi Kodama, Junko Kohira, Takehide Kosuge, Fumiko Kubodera, Eisuke Kurihara, Kyungbum Lee, Mika Maki, Kimiko Mimura, Mieko Mochizuki, Takeshi Moriyama, Yoshihisa Munakata, Naoko Murakata, Sachiko Nagira, Masahiko Nagura, Hidemi Nishimura, Asami Nozaki, Toshihisa Okido, Katsunaga Sakai, Masakazu Sano, Makoto Sato, Yukie Shinyama, Naoki Shiraishi, Rie Sugita, Kimiko Suzuki, Kazuya Takei, Haru Tsutsui, Koji Watanabe, Naoto Yabuta, Hiroaki Yamada, Shigeru Yatsuzuka, Emi Yokoyama, Takashi Gojobori, Eli Kaminuma, Osamu Ogasawara, Kosaku Okubo, Toshihisa Takagi and Yasukazu Nakamura Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics Research Organization of Information and Systems Mishima 411-8540, Japan Phone: +81 55 981 6853 FAX: +81 55 981 6849 E-mail: ddbj@ddbj.nig.ac.jp (for general inquiry) ddbjsub@ddbj.nig.ac.jp (for data submission) ddbjupdt@ddbj.nig.ac.jp (for updates and notification of publication) WWW: http://www.ddbj.nig.ac.jp/ (for DDBJ WWW server) http://sakura.ddbj.nig.ac.jp/ (for DDBJ sequence data submission system) 5. Acknowledgment We are grateful to NCBI and EBI for a firm friendship and an excellent collaboration with us. We also thank JPO and KIPO for a steady cooperation with us. The operation of DDBJ is supported by the Ministry of Education, Culture, Sports, Science and Technology, and we would gratefully note this here. DDBJ uses the Super-SINET computer network for data collection, data exchange and various services. 6. Disclaimer While DDBJ endeavors to keep its data correct, DDBJ makes no representations or warranties of any kind about the completeness, accuracy or reliability with respect to the entries contained in the DDBJ periodical release. DDBJ also makes no legal liability or responsibility of merchantability or fitness for a particular purpose or that the use of the sequence data will not infringe any patent or other rights. Any receipt, reliance or use you place on such data is therefore strictly at your own risk. 7. File categories This release covers 21 categories (see also '3. Division categories'.) of organisms and others as follows: ------------------------------------------------------------------------------ ddbjbct; Category for bacteria ddbjcon; Category for CON (contigs) ddbjenv; Category for ENV (environmental samples) ddbjest; Category for EST (expressed sequence tags) ddbjgss; Category for GSS (genome survey sequences) ddbjhtc; Category for HTC (high throughput cDNA sequences) ddbjhtg; Category for HTG (high throughput genomic sequences) ddbjhum; Category for human ddbjinv; Category for invertebrates ddbjmam; Category for mammals other than primates and rodents ddbjpat; Category for patents ddbjphg; Category for phages ddbjpln; Category for plants ddbjpri; Category for primates other than human ddbjrod; Category for rodents ddbjsts; Category for STS (sequence tagged sites) ddbjsyn; Category for synthetic DNAs ddbjtsa; Category for TSA (transcriptome shotgun assemblies) ddbjuna; Category for unannotated sequences ddbjvrl; Category for viruses ddbjvrt; Category for vertebrates other than mammals ------------------------------------------------------------------------------ Some of above in the present release are recorded in multiple ddbj***###.seq files, each of which at most has 1.5 GB storage capacity as follows, respectively. --------------------- ddbjbct : 12 files ddbjenv : 7 files ddbjest : 157 files ddbjgss : 65 files ddbjhtc : 2 files ddbjhtg : 22 files ddbjhum : 6 files ddbjinv : 5 files ddbjmam : 2 files ddbjpat : 28 files ddbjpln : 9 files ddbjpri : 2 files ddbjrod : 5 files ddbjsts : 3 files ddbjtsa : 8 files ddbjvrl : 4 files ddbjvrt : 4 files ddbjcon : 24 files --------------------- The index files included in this release are ddbjacc#.idx, ddbjgen.idx, ddbjjou#.idx, and ddbjkey#.idx. See also '10. File list'. All of them except ddbjgen.idx are recorded in multiple ddbj***#.idx files, each of which at most has 1.5 GB storage capacity. 8. Sample of the contents in each file 8.1. Part of the contents in the file 'ddbjbct1.seq' This shows all pieces of information on one entry in DDBJ format. ------------------------------------------------------------------------------ LOCUS D87069 993 bp mRNA linear BCT 05-OCT-2006 DEFINITION Escherichia coli mRNA for RNA polymerase sigma subunit, truncated form of sigma-38, complete cds. ACCESSION D87069 VERSION D87069.1 KEYWORDS RNA polymerase sigma subunit, truncated form of sigma-38. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 993) AUTHORS Jishage,M. TITLE Direct Submission JOURNAL Submitted (14-AUG-1996) to the DDBJ/EMBL/GenBank databases. Contact:Miki Jishage National Institute of Genetics, Molecular Genetics; Yata 1111, Mishima, Shizuoka 411, Japan REFERENCE 2 AUTHORS Jishage,M. and Ishihama,A. TITLE Variation in RNA polymerase sigma subunit composition within different stocks of Escherichia coli starin W3110 JOURNAL Unpublished (1996) REFERENCE 3 AUTHORS Ivanova,A., Renshaw,M., Guntaka,R. and Eisenstark,A. TITLE DNA base sequence variability in katF (putative sigma factor) gene Escherichia coli JOURNAL Nucleic Acids Res. 20, 5479-5480 (1992) REFERENCE 4 AUTHORS Takayanagi,Y., Tanaka,K. and Takahashi,H. TITLE Structure of the 5' upstream region and the regulation of the rpoS gene of Escherichia coli JOURNAL Mol. Gen. Genet. 243, 525-531 (1994) COMMENT FEATURES Location/Qualifiers source 1..993 /db_xref="taxon:562" /mol_type="mRNA" /organism="Escherichia coli" /strain="W3110" CDS 1..810 /note="the gene has four single base changes, resulting in two amino acid substitutions and an amber mutation" /product="RNA polymerase sigma subunit, truncated form of sigma-38" /protein_id="BAA13238.1" /transl_table=11 /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEYEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK" variation 75 /citation=[3] /replace="t" variation 97 /citation=[3] /replace="t" variation 99 /citation=[3] /replace="t" variation 808 /citation=[3] /replace="t" BASE COUNT 254 a 223 c 291 g 225 t ORIGIN 1 atgagtcaga atacgctgaa agttcatgat ttaaatgaag atgcggaatt tgatgagaac 61 ggagttgagg tttttgacga aaaggcctta gtagaatatg aacccagtga taacgatttg 121 gccgaagagg aactgttatc gcagggagcc acacagcgtg tgttggacgc gactcagctt 181 taccttggtg agattggtta ttcaccactg ttaacggccg aagaagaagt ttattttgcg 241 cgtcgcgcac tgcgtggaga tgtcgcctct cgccgccgga tgatcgagag taacttgcgt 301 ctggtggtaa aaattgcccg ccgttatggc aatcgtggtc tggcgttgct ggaccttatc 361 gaagagggca acctggggct gatccgcgcg gtagagaagt ttgacccgga acgtggtttc 421 cgcttctcaa catacgcaac ctggtggatt cgccagacga ttgaacgggc gattatgaac 481 caaacccgta ctattcgttt gccgattcac atcgtaaagg agctgaacgt ttacctgcga 541 accgcacgtg agttgtccca taagctggac catgaaccaa gtgcggaaga gatcgcagag 601 caactggata agccagttga tgacgtcagc cgtatgcttc gtcttaacga gcgcattacc 661 tcggtagaca ccccgctggg tggtgattcc gaaaaagcgt tgctggacat cctggccgat 721 gaaaaagaga acggtccgga agataccacg caagatgacg atatgaagca gagcatcgtc 781 aaatggctgt tcgagctgaa cgccaaatag cgtgaagtgc tggcacgtcg attcggtttg 841 ctggggtacg aagcggcaac actggaagat gtaggtcgtg aaattggcct cacccgtgaa 901 cgtgttcgcc agattcaggt tgaaggcctg cgccgtttgc gcgaaatcct gcaaacgcag 961 gggctgaata tcgaagcgct gttccgcgag taa // ------------------------------------------------------------------------------ 8.2. Part of the contents in the accession number index file 'ddbjacc1.idx' The following excerpt from the accession number index file illustrates the format of the index. ------------------------------------------------------------------------------ D00001 ECPBPA BCT X04516 D00002 ECPYRC BCT X04469 D00003 HUMP450M HUM D00003 D00004 FLBFLBL40 VRL D00004 D00005 IBAMEM682 VRL D00005 D00006 BACPNS1981 BCT D00006 D00007 CHKCALGRP VRT D00007 D00008 ECPNTAB BCT X04195 D00009 DROPER1 INV D00009 ------------------------------------------------------------------------------ 8.3. Part of the contents in the keyword phrase index file 'ddbjkey1.idx' Keyword phrases consist of names for gene products and other characteristics of sequence entries. ------------------------------------------------------------------------------ "COAT PROTEIN SMO511347 VRL AJ511347 'TNPA GENE UBA564903 BCT AJ564903 'ZINC-FINGER' MOTIF PRNS53 VRL X60546 (+) MATING TYPE SURFACE PROTEIN ABGPSSP PLN M94861 (1,3 TABETGLUB PLN Z22874 (1,3)-BETA-D-GLUCAN BINDING PROTEIN AJ606470 INV AJ606470 (1,3)BETA-GLUCAN SYNTHASE NCU09275 PLN U09275 (1,4)-BETA-D-ARABINOXYLAN ARABINOFURANOHYDROLASE ANAXHA PLN Z78011 ANTUAXHA PLN Z78010 (1,6)-BETA-GLUCAN BIOSYNTHESIS YSAKRE1A PLN M81588 (1-3)-BETA-GLUCANASE NTSP41AGN PLN X81560 PA13BGPT PLN X57794 (1-3,1-4)-BETA-D-GLUCANASE HVBDG PLN X52572 (1-4)-BETA-MANNAN ENDOHYDROLASE CAR278996 PLN AJ278996 CAR293305 PLN AJ293305 (2',5'-OLIGOISOADENYLATE SYNTHETASE-DEPENDENT) AL138776 HUM AL138776 (2'-5') OLIGO(A) SYNTHASE E16 SSO4G06 EST F14610 (2'-5')OLIGOADENYLATE SYNTHETASE HSA225089 HUM AJ225089 HUMSYN25A HUM D00068 SSA225090 MAM AJ225090 (6')-IB' AMINOGLYCOSIDE ACETYLTRANSFERASE AXY278514 BCT AJ278514 PAE291609 BCT AJ291609 (8,11)-LINOLEOYL DESATURASE COF245938 PLN AJ245938 ------------------------------------------------------------------------------ 8.4. Part of the contents in the journal citation index file 'ddbjjou1.idx' The journal citation index file lists all of the citations that appear in the references. ------------------------------------------------------------------------------ (ER) AAPS PHARMSCI. 4 (3), DOI 10.1208/PS040315 (2002) AY170916 ROD AY170916 (ER) AM. J. HUM. GENET. 76 (1) (2004) IN PRESS AY753209S1 HUM AY753209 AY753209S2 HUM AY753210 (ER) ARCH. VIROL. (2004) IN PRESS AF531505 VRL AF531505 AY518899 VRL AY518899 AY518900 VRL AY518900 AY518901 VRL AY518901 AY518902 VRL AY518902 AY518903 VRL AY518903 AY518904 VRL AY518904 AY518905 VRL AY518905 AY518906 VRL AY518906 AY518907 VRL AY518907 AY518908 VRL AY518908 AY518909 VRL AY518909 AY518910 VRL AY518910 AY518911 VRL AY518911 AY518912 VRL AY518912 AY518913 VRL AY518913 AY518914 VRL AY518914 AY518915 VRL AY518915 AY518916 VRL AY518916 AY518917 VRL AY518917 AY518918 VRL AY518918 AY518919 VRL AY518919 AY518920 VRL AY518920 AY518921 VRL AY518921 AY518922 VRL AY518922 AY518923 VRL AY518923 AY518924 VRL AY518924 AY518925 VRL AY518925 AY518926 VRL AY518926 AY518927 VRL AY518927 AY518928 VRL AY518928 AY518929 VRL AY518929 AY518930 VRL AY518930 AY518931 VRL AY518931 AY518932 VRL AY518932 AY521234 VRL AY521234 AY521235 VRL AY521235 AY521236 VRL AY521236 AY521237 VRL AY521237 AY521238 VRL AY521238 (ER) ARTERIOSCLER. THROMB. VASC. BIOL. (2004) IN PRESS AY563557 HUM AY563557 (ER) BIOCHEM. BIOPHYS. RES. COMMUN. 325 (1), 203-214 (2004) AY563137 HUM AY563137 (ER) BIOCHEM. J./10.1042/BJ20030293 HSA496460 HUM AJ496460 ------------------------------------------------------------------------------ 8.5. Part of the contents in the gene name index file 'ddbjgen.idx' This file lists all the gene names that appear in the feature table. ------------------------------------------------------------------------------ 'ARR BX927156 BCT BX927156 'BGLG BX927156 BCT BX927156 'BGLS BX927148 BCT BX927148 'BGLY' BX927156 BCT BX927156 'BRNQ AF305888 BCT AF305888 'COMK AL591983 BCT AL591983 AL596172 BCT AL596172 'CRCB BX927155 BCT BX927155 'CRTI BX927155 BCT BX927155 'DPPE LDDIPEP BCT Z34898 'FIC BX936398 BCT BX936398 ------------------------------------------------------------------------------ 9. Release history Release Date Entries Bases Comments 88 12/11 145,861,965 134,956,109,049 87 09/11 142,339,601 131,276,394,833 86 06/11 138,030,308 128,745,918,079 85 03/11 132,302,771 124,516,775,718 84 12/10 128,607,035 120,919,136,706 83 09/10 124,079,491 117,728,717,442 82 06/10 120,034,097 115,169,689,543 81 03/10 116,720,237 112,394,932,676 TPA excluded 80 12/09 112,314,250 109,636,862,252 SOURCE line modified 79 09/09 108,593,519 106,684,379,504 DBLINK line started PROJECT line terminated 78 06/09 105,737,359 104,597,360,291 77 03/09 102,099,156 101,765,388,414 76 12/08 98,220,409 98,741,908,446 75 09/08 92,840,037 95,219,505,205 TSA division started 74 06/08 87,903,140 91,294,770,939 73 03/08 83,167,582 86,099,950,395 KIPO inclusion started 72 12/07 79,004,098 82,592,245,487 Most of E-mail addresses discarded 71 09/07 76,273,345 79,706,204,461 70 06/07 72,801,679 76,788,510,646 69 03/07 67,523,680 71,775,679,500 PROJECT line started Indexes for categories terminated 68 12/06 64,267,978 68,259,314,742 1.5 GB storage started 67 09/06 61,144,621 65,443,024,193 66 06/06 58,176,628 62,945,843,881 65 03/06 55,890,995 60,564,721,635 TPA subcategories started 64 12/05 52,272,669 56,098,558,378 Some index files split 63 09/05 47,741,593 52,246,110,341 62 06/05 45,249,444 49,158,155,283 ENV division started Version for release note started 61 03/05 43,118,204 47,099,081,750 Changed style of release note 60 12/04 40,583,945 44,416,752,273 /db_xref="H-inv:**" started 59 09/04 37,926,117 42,245,956,937 58 06/04 34,917,581 39,812,635,108 57 03/04 32,693,678 38,008,449,840 56 12/03 30,405,173 36,079,046,032 55 09/03 27,753,140 34,280,225,489 54 06/03 25,149,821 32,162,041,177 53 02/03 23,250,813 29,711,299,332 52 12/02 20,354,812 26,931,456,316 51 09/02 18,401,358 22,782,404,136 TPA started 50 06/02 17,260,693 20,158,357,982 49 04/02 16,503,157 18,579,627,226 48 01/02 15,016,100 16,197,713,855 47 10/01 13,266,610 14,145,671,645 46 07/01 12,313,759 13,037,646,166 45 04/01 11,434,113 12,207,092,905 HTC division started 44 01/01 10,165,597 11,136,298,841 43 10/00 8,666,551 10,034,532,698 42 07/00 7,554,995 8,880,721,093 41 04/00 5,962,608 6,409,581,885 CON division started 40 01/00 5,388,125 4,762,696,173 RNA division terminated 39 10/99 4,810,773 3,728,000,562 NID and PID discarded 38 07/99 4,294,369 3,098,519,597 37 03/99 3,311,627 2,375,261,951 VERSION, /protein_id started 36 01/99 3,073,166 2,190,425,560 35 10/98 2,759,261 1,957,341,169 34 07/98 2,412,785 1,708,580,623 33 04/98 2,174,769 1,479,303,279 32 01/98 1,956,669 1,300,950,613 31 10/97 1,731,532 1,139,869,464 Adoption of the unified taxonomy database 30 07/97 1,534,115 992,788,339 NID and PID terminated 29 04/97 1,270,194 841,415,232 28 01/97 1,154,120 756,785,219 HTG division started ORG division terminated 27 10/96 936,697 608,103,057 GSS division started 26 07/96 835,552 551,932,448 25 04/96 744,490 499,300,364 /translation started 24 01/96 637,508 431,771,652 23 10/95 569,757 390,694,350 22 07/95 437,588 322,982,425 HUM division started 21 04/95 274,596 250,875,023 20 01/95 239,689 231,299,557 19 10/94 204,332 205,274,131 18 07/94 185,230 192,473,021 17 04/94 169,957 179,942,209 16 01/94 154,626 165,017,628 15 10/93 131,649 147,224,690 14 07/93 120,350 138,686,333 JPO inclusion started 13 04/93 112,067 129,784,445 12 01/93 97,683 120,815,244 EST division started 11 07/92 65,693 84,839,075 10 01/92 59,317 77,805,556 GenBank/EMBL inclusion started 9 07/91 1,130 2,002,124 8 01/91 879 1,573,442 7 07/90 681 1,154,211 6 01/90 496 841,236 5 07/89 395 679,378 4 01/89 302 535,985 3 07/88 230 345,850 2 01/88 142 199,392 1 07/87 66 108,970 Started with DDBJ only ------------------ Since release 81 ------------------ TPA category data have been excluded from DDBJ periodical release: Since September 2002 (DDBJ release 51), we provided DDBJ periodical releases including TPA category data. However, it is potentially confusing, because TPA category is not primary nucleotide sequence data. Therefore, DDBJ terminated to include TPA data. TPA data has been available from the other FTP site. See following site in detail. URL; http://www.ddbj.nig.ac.jp/whatsnew/whatsnew2009-e.html#090828 ------------------ Since release 80 ------------------ The format of the SOURCE line in DDBJ flat file has been changed: The SOURCE lines in some of DDBJ flat file included a common name like as GenBank flat file. The change is shown below ---------------- Old (-rel. 79) ---------------- Format: SOURCE [] Example: SOURCE Homo sapiens mitochondrion ---------------- New (rel. 80-) ---------------- Format: SOURCE [] [()] Example: SOURCE mitochondrion Homo sapiens (human) See also '2. DDBJ flat file format'. ------------------ Since release 79 ------------------ A new line, DBLINK, has replaced PROJECT line: Following the agreement at the INSD collaborative meeting in 2008, the scope of the project ID has expanded to include projects that are not necessarily targeted to the sequencing of a complete genome. In addition, there are other resources such as the Trace Assembly Archive at the NCBI and the like. Therefore, we have decided to replace the PROJECT line by a new line format, "DBLINK". The replacement is illustrated in the following; From the use of the PROJECT line (-release 78); ------------------------------------------------------------------------------- LOCUS AP000000 4700000 bp DNA circular BCT 27-FEB-2009 DEFINITION Escherichia coli DDBJ genomic DNA, complete genome. ACCESSION AP000000 VERSION AP000000.1 PROJECT GenomeProject:99999 KEYWORDS . ------------------------------------------------------------------------------- To the DBLINK line format (release 79-); ------------------------------------------------------------------------------- LOCUS AP000000 4700000 bp DNA circular BCT 27-FEB-2009 DEFINITION Escherichia coli DDBJ genomic DNA, complete genome. ACCESSION AP000000 VERSION AP000000.1 DBLINK Project:99999 KEYWORDS . ------------------------------------------------------------------------------- ------------------ Since release 75 ------------------ A new division for assembled mRNA sequences, Transcriptome Shotgun Assembly (TSA), has been included since the release 75. With new sequencing technologies in use, INSDC have faced many requests to accept assembled EST sequences. These sequence data have become more useful than used to be, although they may not be correctly assembled or exist in nature. Therefore, INSDC decided to collect assembled EST sequences and classified them into the new division 'TSA'. TSA sequences are shotgun assemblies of primary sequences deposited in the EST division of INSDC, race Archive (TA) or Short-Read Archive (SRA). Two specific keywords, "TSA" and "Transcriptome Shotgun Assembly", are present in all TSA entries. The new division code, "TSA", is also described in the the LOCUS line in all TSA entries. No format changes in the flat file are anticipated for the TSA division, however, note that TSA entries make use of the same PRIMARY line that is described for the entries in TPA category. The PRIMARY block contains references to the underlying reads/transcripts that are assembled to construct a TSA record. Note that it is required for a TSA submission to submit sequence data of primary transcripts to the EST division of INSDC, TA, or SRA. More information about how to submit a TSA entry is provided via the following URL; http://www.ddbj.nig.ac.jp/sub/tsa-e.html ------------------ Since release 73 ------------------ Introduction of the sequence data from the Korean Intellectual Property Office: The nucleotide sequence data transferred from Korean Intellectual Property Office (KIPO) have been included in DDBJ release. See also, '3. Division categories' and '3.1. Notice for patent related sequence data'. ------------------ Since release 72 ------------------ Deletion of E-mail address, phone and fax numbers from DDBJ flat file: To follow the Japanese law of protecting personal information, DDBJ deleted both phone and fax numbers, and E-mail address from the flat files of the entries submitted to DDBJ. It would be also helpful to protect DDBJ releases against SPAM mail senders. DDBJ retrofitted most of all entries submitted to DDBJ, not to GenBank or EMBL, by the DDBJ periodical release 72. Previously, the submitter information was described in JOURNAL line at REFERENCE 1 as, -------------------------------------------------------------------------------- REFERENCE 1 (bases 1 to 1200) AUTHORS Mishima,T. TITLE Direct Submission JOURNAL Submitted (01-Jan-1990) to the DDBJ/EMBL/GenBank databases. Taro Mishima, DNA Data Bank of Japan, National Institute of Genetics; 1111, Yata, Mishima, Shizuoka 411-8540, Japan (E-mail:ddbj@ddbj.nig.ac.jp, URL:http://www.ddbj.nig.ac.jp/, Tel:81-12-345-6789, Fax:81-12-345-9876) -------------------------------------------------------------------------------- After the deletion or the information in question, DDBJ flat file is either one of the following two types; Type 1: Phone and fax numbers and E-mail address are deleted. -------------------------------------------------------------------------------- REFERENCE 1 (bases 1 to 1200) AUTHORS Mishima,T. TITLE Direct Submission JOURNAL Submitted (01-Jan-1990) to the DDBJ/EMBL/GenBank databases. Contact:Taro Mishima DNA Data Bank of Japan, National Institute of Genetics; 1111, Yata, Mishima, Shizuoka 411-8540, Japan URL :http://www.ddbj.nig.ac.jp/ ------------------------------------------------------------------------------- Type 2: When the submitters wish to keep their contact information disclosed, it is described as, ------------------------------------------------------------------------------- REFERENCE 1 (bases 1 to 1200) AUTHORS Mishima,T. TITLE Direct Submission JOURNAL Submitted (01-Jan-1990) to the DDBJ/EMBL/GenBank databases. Contact:Taro Mishima DNA Data Bank of Japan, National Institute of Genetics; 1111, Yata, Mishima, Shizuoka 411-8540, Japan URL :http://www.ddbj.nig.ac.jp/ E-mail :ddbj@ddbj.nig.ac.jp Phone :81-12-345-6789 Fax :81-12-345-9876 ------------------------------------------------------------------------------- ------------------ Since release 69 ------------------ Introduction of the project ID at PROJECT line in DDBJ flat file: Following the agreement at the INSD collaborative meeting in 2006, INSDC has started to assign the project ID for submissions from sequencing projects. The description of project ID is shown as below; ---------------------------------------------------------------------------- A unique identifier, assigned at the time of the submission by a sequencing project that informed INSDC of the submission beforehand. It is recommended that the submitter quotes the assigned project ID in all communication with INSDC databases to allow for easier and faster tracking of issues. The project ID field provides an umbrella identifier that points to all related sequence data for the project. ---------------------------------------------------------------------------- The PROJECT lines contain INSDC-assigned ID for the sequencing project. It will be appeared between VERSION and KEYWORDS lines in DDBJ flat files, from the DDBJ periodical release, 69 as shown below. See also '2. DDBJ flat file format'. ---------------------------------------------------------------------------- ACCESSION AB012345 VERSION AB012345.1 PROJECT GenomeProject:123 KEYWORDS . ---------------------------------------------------------------------------- Termination of providing the index files for each category: ------------------ Since release 68 ------------------ Split of files: We changed the maximum file size from 300 MB to 1.5 GB, because the network capacity has been remarkably increased. Each file named as ddbj***##.seq has at most 1.5 GB storage capacity. See also the sections, '7. File categories' and '10. File list'. ------------------ Since release 64 ------------------ Split of index files: In the present release, some of index files (ddbjacc.idx, ddbjjou.idx, and ddbjkey.idx) have been greater than 2 GB in the file size. So, these have been recorded in multiple ddbj****.idx files, each of which at most has 1.5 GB storage capacity as follows, respectively. See also 7., 8.2., 8.3., 8.4. and 10. ------------------ Since release 62 ------------------ Release version number is introduced: DDBJ has started to include the item, 'version', for its release note, which indicates a version for its periodical release. It is expressed like '62.0', in which the digit(s) after the period is a version number. The reason for adding the version number is that a released data is sometimes revised due to urgent and necessary corrections. The number is increased by one every time when a revised periodical release is made public until the next release. Introduction of ENV division: Recently, the submissions of the sequences derived from environmental samples have rapidly increased. To accommodate such submissions, a new division, ENV, has been created (See also '3.1. Division categories'). This division contains the sequences obtained via direct molecular isolation such as PCR, DGGE, or any anonymous method. In the past, the sequences derived from environmental samples belonged to taxonomic divisions, mainly BCT. At DDBJ, the retrofit to transfer relevant entries from taxonomic divisions to the ENV division starts in the present release, and ends by the next periodical release. Please note that during this transitional period, some entries to be eventually placed in the ENV division will be found in other divisions. Strand information is removed: The strand information of LOCUS line in the flat file has been removed as shown below. See also '2.1. LOCUS line'. ---------------------------------------------------------------------------- Old (-rel. 61): 44-44 space 45-47 spaces, ss- (single-stranded), ds- (double-stranded), or ms- (mixed-stranded) New (rel. 62-): 44-47 spaces ---------------------------------------------------------------------------- ------------------ Since release 61 ------------------ The style of release note (this file) has been changed. Some entries have the sequential format for the secondary accession numbers in the ACCESSION line, in order to make the expression of secondary accession numbers in the past short. For example; ------------------------------------------------------------------------------ Before; ACCESSION AB000802 D85885 D85886 D85887 After; ACCESSION AB000802 D85885-D85887 ------------------------------------------------------------------------------ See also '2.3. ACCESSION line'. ------------------ Since release 60 ------------------ The cross-reference to the H-invitational has been included. ------------------ Since release 56 ------------------ The three data banks have agreed that the maximum length limitation (350 kb) of a submitted sequence be relaxed. The BASE COUNT line of the DDBJ flat file format has been changed, corresponding to the relaxation of the maximum sequence length restriction in the entry that had been practiced at DDBJ/EMBL/GenBank International Nucleotide Sequence Databases. In the BASE COUNT line of the DDBJ flat file, 6 digits had been allocated for each number of a, c, g, t and other bases in the sequence. Hereafter, in the new flat file format, 9 digits are allocated for each number of a, c, g and t, while the numbers of other bases are removed. In accordance with the relaxation of sequence length limitation, GenBank had already dropped the BASE COUNT line from their flat file format from GenBank Release 138 (Oct. 2003). We DDBJ have decided to maintain the BASE COUNT line in our flat file format from the view that GC contents are still important information to characterize the sequence. The changes in the BASE COUNT line are shown below. ---------------------------------------------------------------------------- Old (-rel. 55): 1 6 11 16 21 26 31 36 41 46 51 56 61 66 71 |----|----|----|----|----|----|----|----|----|----|----|----|----|----| BASE COUNT 123456 a 123456 c 123456 g 123456 t 123456 others New (rel. 56-): 1 6 11 16 21 26 31 36 41 46 51 56 61 66 71 |----|----|----|----|----|----|----|----|----|----|----|----|----|----| BASE COUNT 123456789 a 123456789 c 123456789 g 123456789 t ---------------------------------------------------------------------------- ------------------ Since release 54 ------------------ '/sequenced_mol' qualifier has been changed to '/mol_type' qualifier. We accordingly completed retrofitting the pertinent entries. This change was made on the agreement at the INSD collaborative meeting in 2002. ------------------ Since release 51 ------------------ The format of LOCUS line in the flat file has been changed as shown below to adjust to the GenBank format. ------------------------------------------------------------------------------ Old (-rel. 50): LOCUS AB000001 660 bp DNA PLN 01-FEB-2001 New (rel. 51-): LOCUS AB000001 660 bp DNA linear PLN 01-FEB-2001 ------------------------------------------------------------------------------ ------------------ Since release 45 ------------------ The HTC (High Throughput cDNA) division has been included. This is to include unfinished high throughput cDNA sequences, each of which has 5'UTR and 3'UTR at both ends and part of a coding region. The sequence may also include introns. When the sequence becomes finished later, it moves to the corresponding taxonomic division. The sequence is accompanied with a keyword, HTC (High Throughput cDNA), which is dropped when the sequence is finished and moved to a taxonomic division. ------------------ Since release 41 ------------------ The CON division has been included. This division is to show the order of related sequences in a genome, and expressed by join and the accession numbers of the sequences. The contents of the CON division are compiled by the three data banks not by the data submitter. ------------------ Since release 40 ------------------ The RNA division was terminated. ------------------ Since release 37 ------------------ The three data banks include the item VERSION in the flat file, which indicates a version of a submitted nucleotide sequence. It is expressed like AB123456.1, in which the digit(s) after the period is a version number. The reason for adding VERSION is that since a released sequence sometimes revised by the submitter, the accession number alone cannot specify the sequence in question causing the user a trouble. The number is increased by one every time when a revised sequence is made public. Accordingly, the translated protein sequence will be accompanied with a /protein_id which is expressed as BAA12345.1, in which the digit(s) after the period is again a version number. The number is increased by one when the corresponding nucleotide sequence is revised and the protein sequence is changed as a result, and when the revised protein sequence is made public. ------------------ Since release 31 ------------------ We have started adopting the unified taxonomy database to unify the biological source of the sequence. The database is made up with scientific names, ID of unidentified organisms, and synthetic constructs etc. ------------------ Since release 30 ------------------ NID and PID were terminated. This change was made on the agreement at the INSD collaborative meeting in 1999. ------------------ Since release 28 ------------------ The HTG (High Throughput Genomic sequence) has been included. We terminated the ORG (Organelle) division. ------------------ Since release 27 ------------------ The GSS division has been included. GSS stands for Genome Survey Sequence, which is similar to EST, except that GSS is genomic DNA whereas EST is cDNA. ------------------ Since release 25 ------------------ DDBJ release contains amino acid sequences that were translated from the corresponding nucleotide sequences of the database. ------------------ Since release 22 ------------------ The HUM division has been included. We have the human (HUM) division solely for human sequences and the primate (PRI) division for non-human primate sequences. ------------------ Since release 12 ------------------ The EST (Expressed Sequence Tag) division has been included. ------------------ Since release 10 ------------------ The sequences submitted to GenBank or EMBL have been included in the release. 10. File list The files in this release are arranged in the following order with non-labeled format. ----------------------------------------------------------------------- file name file size ----------------------------------------------------------------------- ddbjrel.txt (DDBJ release note) 78016 ddbjacc1.idx (Accession number index file 1) 1499999963 ddbjacc2.idx (Accession number index file 2) 1500000019 ddbjacc3.idx (Accession number index file 3) 1500000032 ddbjacc4.idx (Accession number index file 4) 1191422016 ddbjgen.idx (Gene name index file) 258417208 ddbjjou1.idx (Journal citation index file 1) 1499999901 ddbjjou2.idx (Journal citation index file 2) 1499983153 ddbjjou3.idx (Journal citation index file 3) 1446732368 ddbjjou4.idx (Journal citation index file 4) 1361671793 ddbjjou5.idx (Journal citation index file 5) 524050741 ddbjkey1.idx (Keyword phrase index file 1) 1499999953 ddbjkey2.idx (Keyword phrase index file 2) 1499999980 ddbjkey3.idx (Keyword phrase index file 3) 1499999963 ddbjkey4.idx (Keyword phrase index file 4) 1260047734 ----------------------------------------------------------------------- file name number of entries number of bases file size ----------------------------------------------------------------------- ddbjbct1.seq 139505 606057622 1499162734 ddbjbct2.seq 68020 666580346 1499085910 ddbjbct3.seq 28690 663812844 1504290392 ddbjbct4.seq 349 668264774 1500464271 ddbjbct5.seq 371 661832396 1504864574 ddbjbct6.seq 549 670705244 1513460613 ddbjbct7.seq 356 659362226 1502707665 ddbjbct8.seq 399 657139168 1506471980 ddbjbct9.seq 354 660002699 1494078728 ddbjbct10.seq 249393 539020883 1499000719 ddbjbct11.seq 81922 646177410 1499001081 ddbjbct12.seq 196229 244001283 738927275 ddbjenv1.seq 545636 433810552 1499000712 ddbjenv2.seq 571574 394870225 1499000846 ddbjenv3.seq 513119 429376493 1499002580 ddbjenv4.seq 657590 292382013 1499000820 ddbjenv5.seq 610458 390485321 1499000506 ddbjenv6.seq 586411 366797391 1499003213 ddbjenv7.seq 488387 354478450 1302462901 ddbjest1.seq 452722 169294997 1499001934 ddbjest2.seq 477088 185655535 1499000132 ddbjest3.seq 490275 203794912 1499001820 ddbjest4.seq 464914 198027650 1499002473 ddbjest5.seq 554234 276057197 1499003412 ddbjest6.seq 540435 344737956 1499000520 ddbjest7.seq 538459 310336491 1498999983 ddbjest8.seq 430594 147295080 1499002455 ddbjest9.seq 468687 195419983 1499000237 ddbjest10.seq 511686 239503762 1499001594 ddbjest11.seq 460660 195689297 1499002012 ddbjest12.seq 386379 143328630 1499001636 ddbjest13.seq 273541 84314868 1499001472 ddbjest14.seq 274165 102819497 1499000268 ddbjest15.seq 359438 171507163 1499001494 ddbjest16.seq 472874 231879317 1499000778 ddbjest17.seq 449699 242057079 1499001954 ddbjest18.seq 448898 243626072 1499000386 ddbjest19.seq 444265 221141806 1499000822 ddbjest20.seq 454586 252418578 1499002139 ddbjest21.seq 453308 288960522 1499001156 ddbjest22.seq 466198 246948402 1499000066 ddbjest23.seq 434171 249178873 1499000350 ddbjest24.seq 459035 262175503 1499003504 ddbjest25.seq 555428 311196092 1499000952 ddbjest26.seq 465559 253605523 1499000107 ddbjest27.seq 424016 247683739 1499001833 ddbjest28.seq 432873 238483005 1499002062 ddbjest29.seq 506709 273440110 1499001664 ddbjest30.seq 488364 242221940 1499000735 ddbjest31.seq 437926 232974959 1499001118 ddbjest32.seq 427776 272268719 1499003288 ddbjest33.seq 418693 297221125 1499001879 ddbjest34.seq 424907 264408201 1499001078 ddbjest35.seq 621505 384735441 1499000594 ddbjest36.seq 546611 288231333 1499000113 ddbjest37.seq 464723 318929673 1499000608 ddbjest38.seq 285599 126363594 1499002556 ddbjest39.seq 260316 102894868 1499003670 ddbjest40.seq 254015 113016942 1499005915 ddbjest41.seq 456014 230793667 1499002278 ddbjest42.seq 421871 269879185 1499001382 ddbjest43.seq 473076 242092055 1499000649 ddbjest44.seq 442688 236324457 1499002694 ddbjest45.seq 520063 297512663 1499001780 ddbjest46.seq 436311 235395235 1499002380 ddbjest47.seq 475770 272996961 1499001708 ddbjest48.seq 516077 263088488 1499002156 ddbjest49.seq 408528 248202249 1499001929 ddbjest50.seq 330444 176326208 1499003965 ddbjest51.seq 264840 124880638 1499005326 ddbjest52.seq 268592 106344021 1499000708 ddbjest53.seq 342685 154876462 1499002126 ddbjest54.seq 496754 302258245 1499000197 ddbjest55.seq 497028 302434528 1499000744 ddbjest56.seq 422584 251928536 1499002513 ddbjest57.seq 432555 245954597 1499002315 ddbjest58.seq 457858 265516572 1499002827 ddbjest59.seq 452855 251475515 1499001353 ddbjest60.seq 428156 249428328 1499001935 ddbjest61.seq 457643 268165520 1499001942 ddbjest62.seq 437739 257010385 1499000821 ddbjest63.seq 496249 319609990 1499001074 ddbjest64.seq 423094 272219622 1499002766 ddbjest65.seq 449153 228365851 1499001071 ddbjest66.seq 438639 274269562 1499001140 ddbjest67.seq 419019 269041800 1499000796 ddbjest68.seq 356498 237954037 1499000917 ddbjest69.seq 449733 242391155 1499002598 ddbjest70.seq 422724 236603817 1499000181 ddbjest71.seq 430280 237387095 1499001715 ddbjest72.seq 454786 243630421 1499001509 ddbjest73.seq 507976 298965669 1499000680 ddbjest74.seq 526923 324050642 1499000702 ddbjest75.seq 582711 339504850 1499000347 ddbjest76.seq 427031 290166069 1499000161 ddbjest77.seq 455855 298321622 1499003033 ddbjest78.seq 421758 284332062 1499002363 ddbjest79.seq 467445 289386432 1499000860 ddbjest80.seq 373135 267514668 1499003172 ddbjest81.seq 391023 266810530 1499001368 ddbjest82.seq 376394 247829260 1499003000 ddbjest83.seq 399117 327164677 1499000552 ddbjest84.seq 454559 282788760 1499002400 ddbjest85.seq 455787 319204907 1499003019 ddbjest86.seq 527659 285537303 1499003070 ddbjest87.seq 519704 198054950 1499000620 ddbjest88.seq 502776 299772994 1499000188 ddbjest89.seq 463422 315306512 1499001216 ddbjest90.seq 512498 294436287 1499001081 ddbjest91.seq 638343 314363499 1499000492 ddbjest92.seq 579056 249074050 1499001111 ddbjest93.seq 472833 285542713 1499002973 ddbjest94.seq 487552 304879454 1499001264 ddbjest95.seq 562420 185243459 1499000724 ddbjest96.seq 506033 309131958 1499002960 ddbjest97.seq 463799 288975247 1499000264 ddbjest98.seq 418098 239260395 1499000336 ddbjest99.seq 649619 128068303 1499002035 ddbjest100.seq 445676 299114444 1499001308 ddbjest101.seq 556702 209254765 1499002782 ddbjest102.seq 465502 292297467 1499000507 ddbjest103.seq 491500 299909869 1499001071 ddbjest104.seq 510866 303459951 1499002033 ddbjest105.seq 569725 207290545 1499002285 ddbjest106.seq 531078 290532614 1499002802 ddbjest107.seq 402967 257342844 1499003841 ddbjest108.seq 453591 273281949 1499002194 ddbjest109.seq 440889 280161737 1499003121 ddbjest110.seq 461223 330896874 1499002597 ddbjest111.seq 438451 301945565 1499001899 ddbjest112.seq 399844 267685369 1499002104 ddbjest113.seq 448363 290028563 1499002625 ddbjest114.seq 425145 264997532 1499002679 ddbjest115.seq 420403 261653763 1499001038 ddbjest116.seq 450662 251403329 1499001425 ddbjest117.seq 349230 224231498 1499002985 ddbjest118.seq 470846 234526302 1499001463 ddbjest119.seq 472419 268673156 1499001147 ddbjest120.seq 387685 248586308 1499000873 ddbjest121.seq 471034 283785069 1499000618 ddbjest122.seq 392312 258817210 1499005789 ddbjest123.seq 348342 200923695 1499001404 ddbjest124.seq 443277 106153195 1499003013 ddbjest125.seq 618090 323485787 1499000424 ddbjest126.seq 472892 272671426 1499001142 ddbjest127.seq 492448 295887982 1499000987 ddbjest128.seq 607558 282708714 1499001796 ddbjest129.seq 498701 286192020 1499000875 ddbjest130.seq 518974 373787913 1499000663 ddbjest131.seq 542314 323402540 1499001021 ddbjest132.seq 523613 318706596 1499002007 ddbjest133.seq 562499 363647646 1499001719 ddbjest134.seq 547926 352840613 1498999997 ddbjest135.seq 463372 86200138 1499000466 ddbjest136.seq 446019 90063363 1499000302 ddbjest137.seq 464112 281659715 1499002535 ddbjest138.seq 436774 285022034 1499001429 ddbjest139.seq 443291 306882313 1499003565 ddbjest140.seq 454719 195599168 1499001009 ddbjest141.seq 452155 263060487 1499002777 ddbjest142.seq 478836 292861634 1499001126 ddbjest143.seq 400553 272694443 1499001402 ddbjest144.seq 476230 269079252 1499002364 ddbjest145.seq 463535 282040060 1499003052 ddbjest146.seq 278978 195733835 1499003711 ddbjest147.seq 389755 230978750 1499002810 ddbjest148.seq 426377 256161263 1499009764 ddbjest149.seq 457878 276838831 1499000996 ddbjest150.seq 472301 264645590 1499003326 ddbjest151.seq 428622 282468508 1499002072 ddbjest152.seq 514008 224142769 1499000205 ddbjest153.seq 529930 251785858 1499000727 ddbjest154.seq 500486 305610483 1499002970 ddbjest155.seq 446746 271522391 1499003487 ddbjest156.seq 463782 198434277 1499002149 ddbjest157.seq 86172 32930503 283655959 ddbjgss1.seq 478522 345408266 1498999931 ddbjgss2.seq 445916 341976874 1499001435 ddbjgss3.seq 447467 336579134 1499000957 ddbjgss4.seq 559978 270893870 1499001702 ddbjgss5.seq 478561 249521122 1499001622 ddbjgss6.seq 459280 253312791 1499000960 ddbjgss7.seq 388769 192435486 1499004048 ddbjgss8.seq 400144 199360966 1499000022 ddbjgss9.seq 478892 270769711 1499000659 ddbjgss10.seq 531867 293415153 1499001178 ddbjgss11.seq 506250 314489186 1499001915 ddbjgss12.seq 530379 345180270 1499001760 ddbjgss13.seq 508195 310582832 1499000259 ddbjgss14.seq 491197 378826343 1499000389 ddbjgss15.seq 568457 333923913 1499000376 ddbjgss16.seq 605958 326036208 1499001914 ddbjgss17.seq 555490 360734958 1499001354 ddbjgss18.seq 515479 349231717 1499001985 ddbjgss19.seq 502132 318686148 1499000077 ddbjgss20.seq 547026 370016945 1499000591 ddbjgss21.seq 584036 382215805 1499002132 ddbjgss22.seq 601583 403430331 1499002101 ddbjgss23.seq 460980 261464927 1499000676 ddbjgss24.seq 489130 312417901 1499000032 ddbjgss25.seq 521327 329774258 1499002036 ddbjgss26.seq 526740 336161012 1499001521 ddbjgss27.seq 533955 329423247 1499002367 ddbjgss28.seq 620484 317781013 1499000732 ddbjgss29.seq 556871 262689815 1499001687 ddbjgss30.seq 492777 393353719 1499000911 ddbjgss31.seq 465494 320337326 1499002688 ddbjgss32.seq 471357 368948620 1499002152 ddbjgss33.seq 550760 330257499 1499000819 ddbjgss34.seq 522344 331899395 1499001573 ddbjgss35.seq 465350 334937642 1499002309 ddbjgss36.seq 532407 313492813 1499002810 ddbjgss37.seq 513162 284502782 1499001613 ddbjgss38.seq 529355 276744169 1499001149 ddbjgss39.seq 386614 310964813 1499000235 ddbjgss40.seq 403797 331820737 1499001931 ddbjgss41.seq 416931 336542427 1499003154 ddbjgss42.seq 404557 329556851 1499001425 ddbjgss43.seq 414558 337278480 1499001918 ddbjgss44.seq 411210 335465236 1499002454 ddbjgss45.seq 407457 333383592 1499002326 ddbjgss46.seq 517896 323663919 1499000525 ddbjgss47.seq 551793 349991384 1499000436 ddbjgss48.seq 580200 394071153 1499001226 ddbjgss49.seq 571522 404281837 1499002156 ddbjgss50.seq 452765 295130435 1499002367 ddbjgss51.seq 497021 305106262 1499001165 ddbjgss52.seq 532980 324028626 1499002293 ddbjgss53.seq 531683 371263825 1499001473 ddbjgss54.seq 546641 400840419 1499000755 ddbjgss55.seq 560938 330392795 1499000254 ddbjgss56.seq 525205 392728862 1499002490 ddbjgss57.seq 531176 331175286 1499001431 ddbjgss58.seq 542829 345580545 1499002722 ddbjgss59.seq 465945 371212041 1499000072 ddbjgss60.seq 484582 434136626 1499001347 ddbjgss61.seq 498815 424836328 1499001785 ddbjgss62.seq 542914 286576192 1499001803 ddbjgss63.seq 732576 132572370 1499000174 ddbjgss64.seq 612997 181639084 1499000190 ddbjgss65.seq 310338 243639191 876595988 ddbjhtc1.seq 273742 359387378 1499000863 ddbjhtc2.seq 261987 252251555 942930002 ddbjhtg1.seq 11401 1118110528 1499023095 ddbjhtg2.seq 7563 1118342964 1499135538 ddbjhtg3.seq 5920 1130695001 1499222029 ddbjhtg4.seq 5457 1140407374 1499222742 ddbjhtg5.seq 5349 1143907188 1499096604 ddbjhtg6.seq 5358 1144304522 1499274228 ddbjhtg7.seq 6593 1132401535 1499133653 ddbjhtg8.seq 6859 1143211860 1499169508 ddbjhtg9.seq 6254 1139223195 1499005793 ddbjhtg10.seq 6341 1133162775 1499072504 ddbjhtg11.seq 7042 1122957839 1499095063 ddbjhtg12.seq 6998 1125918733 1499154194 ddbjhtg13.seq 6938 1141327610 1499129227 ddbjhtg14.seq 6971 1134981407 1499033917 ddbjhtg15.seq 6755 1141231969 1499153215 ddbjhtg16.seq 6293 1138504876 1499090124 ddbjhtg17.seq 6697 1139877256 1499011952 ddbjhtg18.seq 7953 1145757829 1499142658 ddbjhtg19.seq 6773 1140430917 1499162415 ddbjhtg20.seq 6569 1156192514 1499020922 ddbjhtg21.seq 6673 1159076538 1499034199 ddbjhtg22.seq 3134 468611046 615911428 ddbjhum1.seq 31825 1043704959 1499159084 ddbjhum2.seq 8098 1069209311 1499198088 ddbjhum3.seq 145816 830625139 1499095546 ddbjhum4.seq 22708 1074253718 1499102826 ddbjhum5.seq 212711 615618830 1499277118 ddbjhum6.seq 128162 237759833 612653078 ddbjinv1.seq 266720 669058240 1499200956 ddbjinv2.seq 445397 431575697 1499000278 ddbjinv3.seq 317546 556946566 1499002254 ddbjinv4.seq 316495 531902184 1499002338 ddbjinv5.seq 359742 300534427 1329096964 ddbjmam1.seq 232883 775390303 1499000127 ddbjmam2.seq 63197 51920213 211666995 ddbjpat1.seq 1034543 519795270 1499000258 ddbjpat2.seq 771807 491787370 1499002093 ddbjpat3.seq 714411 342573028 1499001612 ddbjpat4.seq 714619 585324355 1499001783 ddbjpat5.seq 712724 403378044 1499001022 ddbjpat6.seq 728288 304375149 1499000060 ddbjpat7.seq 682590 351566309 1499447216 ddbjpat8.seq 697082 525708027 1499000314 ddbjpat9.seq 910134 548646017 1499000906 ddbjpat10.seq 646558 470491168 1499001370 ddbjpat11.seq 633541 366755769 1499001223 ddbjpat12.seq 561188 536021351 1500233399 ddbjpat13.seq 599074 398334171 1499001576 ddbjpat14.seq 546290 514141976 1499001378 ddbjpat15.seq 1009967 28387370 1499001257 ddbjpat16.seq 1028710 19545490 1499000181 ddbjpat17.seq 977505 443859933 1499146975 ddbjpat18.seq 1086862 333674128 1499003831 ddbjpat19.seq 864566 588318000 1499001039 ddbjpat20.seq 1392945 350682434 1499003946 ddbjpat21.seq 624840 791404343 1499002298 ddbjpat22.seq 804665 632739377 1499000983 ddbjpat23.seq 1209052 255264285 1499000807 ddbjpat24.seq 695076 492630492 1499001839 ddbjpat25.seq 1350443 88686630 1499000188 ddbjpat26.seq 1024734 349052631 1499000789 ddbjpat27.seq 633706 447280368 1499000360 ddbjpat28.seq 478728 266931145 823460464 ddbjphg.seq 6365 69569157 169429217 ddbjpln1.seq 103439 962570173 1499039108 ddbjpln2.seq 272503 531688017 1499006802 ddbjpln3.seq 104726 844714436 1499136786 ddbjpln4.seq 305775 622373861 1499998028 ddbjpln5.seq 153717 645768378 1499001776 ddbjpln6.seq 514064 396428975 1499000790 ddbjpln7.seq 200003 787167170 1499586562 ddbjpln8.seq 398190 503934594 1499000843 ddbjpln9.seq 215089 257493960 789156287 ddbjpri1.seq 33733 1098565128 1499038880 ddbjpri2.seq 67106 192148079 385354345 ddbjrod1.seq 36910 1014980500 1499100010 ddbjrod2.seq 5896 1092657328 1499061192 ddbjrod3.seq 10465 1100732786 1499003238 ddbjrod4.seq 108192 837158206 1499004561 ddbjrod5.seq 267465 369731936 960772029 ddbjsts1.seq 416515 210146613 1499001013 ddbjsts2.seq 338038 238199598 1499001514 ddbjsts3.seq 567612 187625896 1498493271 ddbjsyn1.seq 116717 831127696 1499022842 ddbjsyn2.seq 4875 91101553 134003200 ddbjtsa1.seq 654865 267997769 1499003439 ddbjtsa2.seq 598405 322333607 1499000130 ddbjtsa3.seq 549651 372808183 1499001382 ddbjtsa4.seq 550170 321171834 1499002606 ddbjtsa5.seq 586695 339920032 1499001134 ddbjtsa6.seq 550499 391108369 1499002511 ddbjtsa7.seq 460863 488228008 1499000715 ddbjtsa8.seq 371557 318248294 1092859101 ddbjuna.seq 290 480073 1381592 ddbjvrl1.seq 385568 407327496 1499005350 ddbjvrl2.seq 357686 421689780 1499000134 ddbjvrl3.seq 351763 422475363 1499002516 ddbjvrl4.seq 2095 1028663 5271650 ddbjvrt1.seq 244557 694593404 1499005942 ddbjvrt2.seq 68960 979934956 1499037589 ddbjvrt3.seq 269362 713729601 1499001574 ddbjvrt4.seq 318152 348180209 1154370936 ------------------------------------------------------------------------------ Total 145861965 134956109049 501144766036 ddbjcon1.seq 266792 0 1499000561 ddbjcon2.seq 240905 0 1499007481 ddbjcon3.seq 485173 0 1499001618 ddbjcon4.seq 412733 0 1499001507 ddbjcon5.seq 402850 0 1499000082 ddbjcon6.seq 311055 0 1499001530 ddbjcon7.seq 116449 0 1499000972 ddbjcon8.seq 311486 0 1499001781 ddbjcon9.seq 307462 0 1499161604 ddbjcon10.seq 286895 0 1499000381 ddbjcon11.seq 450337 0 1501292117 ddbjcon12.seq 230076 0 1499001794 ddbjcon13.seq 227749 0 1499003655 ddbjcon14.seq 267829 0 1499002297 ddbjcon15.seq 243160 0 1499001212 ddbjcon16.seq 267069 0 1499006927 ddbjcon17.seq 297850 0 1499003479 ddbjcon18.seq 289382 0 1499003026 ddbjcon19.seq 293049 0 1499001468 ddbjcon20.seq 284746 0 1499001547 ddbjcon21.seq 267584 0 1499005400 ddbjcon22.seq 275078 0 1499005051 ddbjcon23.seq 330288 0 1499001291 ddbjcon24.seq 35507 0 436809093 The entries and bases in the CON division are not counted in the numbers given on the top of the release note or 'Total' on the above table.